Wall clock time and date at job start Tue Mar 31 2020 05:51:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46644 * 2 1 4 4 C 1.34520 * 125.78639 * 90.00585 * 3 2 1 5 5 C 1.41381 * 106.83580 * 180.22245 * 4 3 2 6 6 C 1.34513 * 106.84363 * 359.57150 * 5 4 3 7 7 C 1.50697 * 125.78872 * 180.11927 * 6 5 4 8 8 H 1.09003 * 109.47425 * 20.33450 * 7 6 5 9 9 C 1.53001 * 109.46902 * 260.34093 * 7 6 5 10 10 O 1.42905 * 109.46821 * 304.99607 * 9 7 6 11 11 C 1.42908 * 113.99499 * 180.02562 * 10 9 7 12 12 N 1.46903 * 109.47247 * 140.33903 * 7 6 5 13 13 C 1.46896 * 110.99910 * 204.99582 * 12 7 6 14 14 C 1.52997 * 109.46957 * 179.97438 * 13 12 7 15 15 H 1.09000 * 109.47469 * 60.00243 * 14 13 12 16 16 O 1.42904 * 109.47344 * 300.00087 * 14 13 12 17 17 C 1.50705 * 109.47019 * 180.02562 * 14 13 12 18 18 H 1.07999 * 120.00331 * 359.97438 * 17 14 13 19 19 C 1.37879 * 119.99900 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99928 * 359.97438 * 19 17 14 21 21 Si 1.86794 * 120.00061 * 179.97438 * 19 17 14 22 22 H 1.48507 * 109.47073 * 59.99685 * 21 19 17 23 23 H 1.48507 * 109.47304 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47350 * 300.00014 * 21 19 17 25 25 O 1.34302 * 125.79150 * 269.95626 * 3 2 1 26 26 H 1.09001 * 109.47148 * 59.99965 * 1 2 3 27 27 H 1.09007 * 109.46818 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47036 * 299.99550 * 1 2 3 29 29 H 1.09002 * 109.47199 * 239.99938 * 2 1 3 30 30 H 1.09001 * 109.47148 * 120.00035 * 2 1 3 31 31 H 1.08002 * 126.57789 * 359.95308 * 4 3 2 32 32 H 1.08009 * 126.57222 * 179.73218 * 5 4 3 33 33 H 1.09000 * 109.47578 * 64.99885 * 9 7 6 34 34 H 1.09004 * 109.46867 * 185.00042 * 9 7 6 35 35 H 1.08997 * 109.47033 * 299.99939 * 11 10 9 36 36 H 1.08997 * 109.47153 * 60.00422 * 11 10 9 37 37 H 1.09003 * 109.46508 * 180.02562 * 11 10 9 38 38 H 1.00896 * 110.99858 * 328.95129 * 12 7 6 39 39 H 1.08995 * 109.47578 * 299.99976 * 13 12 7 40 40 H 1.09005 * 109.46931 * 60.00187 * 13 12 7 41 41 H 0.96699 * 113.99798 * 300.00155 * 16 14 13 42 42 H 0.97004 * 120.00389 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2945 2.1625 1.0912 5 6 2.7352 3.4250 0.6321 6 6 2.7249 3.3762 -0.7121 7 6 3.1215 4.4973 -1.6377 8 1 3.7461 5.2098 -1.0988 9 6 1.8650 5.2053 -2.1487 10 8 0.9921 4.2490 -2.7534 11 6 -0.2178 4.8098 -3.2670 12 7 3.8725 3.9505 -2.7756 13 6 4.7586 4.9666 -3.3587 14 6 5.5226 4.3610 -4.5378 15 1 4.8145 4.0200 -5.2931 16 8 6.3027 3.2538 -4.0819 17 6 6.4322 5.4033 -5.1357 18 1 6.4620 6.3984 -4.7168 19 6 7.2255 5.0870 -6.2181 20 7 7.1889 3.8755 -6.7285 21 14 8.3524 6.3791 -6.9596 22 1 9.3176 6.8433 -5.9308 23 1 9.0941 5.7912 -8.1040 24 1 7.5420 7.5299 -7.4330 25 8 2.2948 2.1611 -1.0894 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.1849 1.8542 2.1205 32 1 3.0268 4.2663 1.2435 33 1 1.3546 5.6869 -1.3146 34 1 2.1463 5.9576 -2.8858 35 1 -0.7716 5.2833 -2.4563 36 1 0.0205 5.5535 -4.0273 37 1 -0.8254 4.0199 -3.7087 38 1 4.3928 3.1296 -2.5045 39 1 4.1638 5.8113 -3.7061 40 1 5.4671 5.3073 -2.6036 41 1 6.9556 3.4842 -3.4069 42 1 7.7473 3.6527 -7.4898 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354595406.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:39 Heat of formation + Delta-G solvation = -86.669452 kcal Electronic energy + Delta-G solvation = -22785.618428 eV Core-core repulsion = 19346.474287 eV Total energy + Delta-G solvation = -3439.144141 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.40605 -38.03356 -36.48961 -34.79817 -33.97722 -32.60547 -32.09060 -30.30978 -27.77941 -27.53293 -25.83273 -24.43132 -23.59063 -21.72452 -21.22357 -20.39866 -19.72679 -17.00560 -16.94014 -16.28217 -15.94881 -15.65653 -14.88846 -14.78620 -14.56059 -14.47940 -14.22930 -14.10488 -13.45172 -13.11078 -13.05102 -12.76177 -12.57530 -12.44650 -12.35069 -11.84694 -11.62031 -11.56464 -11.18616 -11.05626 -11.01050 -10.89750 -10.82147 -10.69404 -10.08646 -9.69213 -9.42417 -9.01386 -8.55321 -8.22572 -8.09211 -7.81039 -5.98243 -4.17202 1.90679 2.72604 3.07011 3.29611 3.35204 3.36429 3.95878 4.36211 4.57573 4.62386 4.87233 5.10310 5.11905 5.17989 5.20852 5.28487 5.40474 5.43240 5.45030 5.56538 5.57423 5.66886 5.72754 5.74820 5.79452 5.94830 6.03247 6.08349 6.12127 6.22303 6.28831 6.44210 6.65790 6.86602 7.33447 7.37579 7.57531 7.77389 7.84796 8.00517 8.23682 8.86126 9.40694 9.60110 11.05943 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021361 B = 0.003854 C = 0.003624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.504325 B = 7263.713389 C = 7725.193704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C -0.015 4.015 4 C -0.215 4.215 5 C -0.220 4.220 6 C 0.011 3.989 7 C 0.165 3.835 8 H 0.081 0.919 9 C 0.075 3.925 10 O -0.363 6.363 11 C 0.032 3.968 12 N -0.668 5.668 13 C 0.033 3.967 14 C 0.234 3.766 15 H 0.065 0.935 16 O -0.564 6.564 17 C -0.575 4.575 18 H 0.054 0.946 19 C 0.080 3.920 20 N -0.857 5.857 21 Si 0.890 3.110 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 O -0.141 6.141 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.142 0.858 32 H 0.143 0.857 33 H 0.045 0.955 34 H 0.059 0.941 35 H 0.032 0.968 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.351 0.649 39 H 0.065 0.935 40 H 0.019 0.981 41 H 0.340 0.660 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.131 -1.928 14.860 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.080 4.080 3 C -0.066 4.066 4 C -0.234 4.234 5 C -0.240 4.240 6 C -0.040 4.040 7 C 0.055 3.945 8 H 0.098 0.902 9 C -0.003 4.003 10 O -0.281 6.281 11 C -0.065 4.065 12 N -0.301 5.301 13 C -0.095 4.095 14 C 0.176 3.824 15 H 0.083 0.917 16 O -0.366 6.366 17 C -0.613 4.613 18 H 0.072 0.928 19 C -0.126 4.126 20 N -0.492 5.492 21 Si 0.717 3.283 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 O -0.035 6.035 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.075 0.925 29 H 0.101 0.899 30 H 0.107 0.893 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.063 0.937 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.171 0.829 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.183 0.817 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.942 -2.574 13.491 19.570 hybrid contribution 1.579 1.686 0.856 2.463 sum -12.363 -0.888 14.347 18.960 Atomic orbital electron populations 1.21772 0.94164 1.01983 1.02635 1.20042 0.96207 0.87838 1.03921 1.22442 1.04325 0.95252 0.84562 1.21416 1.08470 0.94529 0.99014 1.21484 1.09393 0.99446 0.93682 1.22244 1.02379 0.85927 0.93468 1.20237 0.94431 0.90479 0.89334 0.90159 1.22573 0.90079 0.91398 0.96242 1.88068 1.29820 1.33085 1.77135 1.22690 0.87174 0.99309 0.97354 1.60490 1.31849 1.09095 1.28701 1.22981 0.93744 0.94343 0.98476 1.19398 0.89074 0.84945 0.88985 0.91720 1.86612 1.52451 1.37401 1.60102 1.21584 1.25823 0.97912 1.15980 0.92773 1.25032 0.96543 0.95005 0.96069 1.70078 1.38081 1.18444 1.22613 0.86731 0.80894 0.81872 0.78795 1.20219 1.21187 1.20168 1.84107 1.63636 1.21835 1.33932 0.92057 0.91889 0.92476 0.89935 0.89276 0.84060 0.83965 0.93672 0.92259 0.94976 0.94189 0.89995 0.82882 0.91624 0.96315 0.81670 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.89 37.16 0.37 -0.96 16 2 C -0.04 -0.44 6.47 -27.88 -0.18 -0.62 16 3 C -0.01 -0.20 6.57 -35.62 -0.23 -0.44 16 4 C -0.22 -2.78 10.81 -39.70 -0.43 -3.21 16 5 C -0.22 -3.03 10.80 -39.70 -0.43 -3.46 16 6 C 0.01 0.18 5.36 -35.63 -0.19 -0.01 16 7 C 0.17 2.59 2.87 -68.86 -0.20 2.40 16 8 H 0.08 1.12 7.79 -51.93 -0.40 0.72 16 9 C 0.07 1.10 5.69 37.16 0.21 1.31 16 10 O -0.36 -5.98 10.02 -35.23 -0.35 -6.34 16 11 C 0.03 0.39 11.01 101.05 1.11 1.51 16 12 N -0.67 -12.69 6.25 -107.95 -0.67 -13.37 16 13 C 0.03 0.68 5.13 -3.83 -0.02 0.66 16 14 C 0.23 5.99 3.10 -27.88 -0.09 5.91 16 15 H 0.07 1.89 8.14 -51.93 -0.42 1.46 16 16 O -0.56 -14.59 12.07 -35.23 -0.43 -15.01 16 17 C -0.57 -15.81 8.76 -34.44 -0.30 -16.11 16 18 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 19 C 0.08 2.25 5.40 -17.82 -0.10 2.16 16 20 N -0.86 -25.65 12.84 55.43 0.71 -24.94 16 21 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 O -0.14 -2.38 10.52 5.71 0.06 -2.32 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.14 1.63 8.06 -52.48 -0.42 1.21 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.87 7.35 -51.93 -0.38 0.49 16 35 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.35 7.00 7.74 -39.29 -0.30 6.69 16 39 H 0.07 1.32 7.36 -51.93 -0.38 0.94 16 40 H 0.02 0.37 8.06 -51.93 -0.42 -0.05 16 41 H 0.34 7.78 9.04 45.56 0.41 8.19 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 355.34 15.07 5.35 5.35 Total: -1.00 -32.48 355.34 -6.91 -39.40 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -6.09 Total: 11.88 kcal Atomic # 6 Polarization: -10.38 SS G_CDS: -0.47 Total: -10.86 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.04 Total: -38.30 kcal Atomic # 8 Polarization: -22.95 SS G_CDS: -0.72 Total: -23.67 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.48 -6.91 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354595406.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.271 kcal (2) G-P(sol) polarization free energy of solvation -32.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds