Wall clock time and date at job start Tue Mar 31 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 110.85952 * 2 1 4 4 C 1.54488 * 110.97105 * 123.79218 * 2 1 3 5 5 N 1.46762 * 105.47622 * 143.53293 * 4 2 1 6 6 C 1.34418 * 111.29856 * 342.98331 * 5 4 2 7 7 O 1.21278 * 124.94095 * 180.39269 * 6 5 4 8 8 C 1.51345 * 110.13298 * 0.43752 * 6 5 4 9 9 H 1.09004 * 110.51975 * 134.88124 * 8 6 5 10 10 O 1.45193 * 110.47774 * 257.54460 * 8 6 5 11 11 C 1.34230 * 117.00200 * 264.73665 * 10 8 6 12 12 O 1.20827 * 119.99799 * 359.97438 * 11 10 8 13 13 C 1.50698 * 120.00284 * 180.02562 * 11 10 8 14 14 C 1.52995 * 109.47324 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47463 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.47463 * 179.97438 * 15 14 13 17 17 C 1.50699 * 109.47299 * 179.97438 * 16 15 14 18 18 H 1.08001 * 119.99715 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00311 * 179.97438 * 17 16 15 20 20 N 1.31519 * 119.99800 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00184 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47227 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47053 * 120.00659 * 21 19 17 24 24 H 1.48505 * 109.46985 * 240.00393 * 21 19 17 25 25 H 1.09002 * 109.47153 * 60.70047 * 1 2 3 26 26 H 1.09001 * 109.46832 * 300.70238 * 1 2 3 27 27 H 1.09004 * 109.47261 * 180.70219 * 1 2 3 28 28 H 1.09000 * 109.47265 * 59.29915 * 3 2 1 29 29 H 1.09002 * 109.47063 * 179.30186 * 3 2 1 30 30 H 1.09001 * 109.46679 * 299.29622 * 3 2 1 31 31 H 1.09003 * 110.23911 * 262.53648 * 4 2 1 32 32 H 1.09002 * 110.24290 * 24.44170 * 4 2 1 33 33 H 0.96997 * 124.34949 * 162.95995 * 5 4 2 34 34 H 1.09009 * 109.46725 * 299.99282 * 13 11 10 35 35 H 1.08996 * 109.47748 * 59.99014 * 13 11 10 36 36 H 1.09005 * 109.47193 * 299.99531 * 14 13 11 37 37 H 1.08997 * 109.47741 * 59.99632 * 14 13 11 38 38 H 1.09005 * 109.46850 * 300.00129 * 15 14 13 39 39 H 1.09003 * 109.47026 * 59.99179 * 15 14 13 40 40 H 1.09009 * 109.46728 * 299.99784 * 16 15 14 41 41 H 1.08996 * 109.47419 * 59.99316 * 16 15 14 42 42 H 0.97004 * 119.99894 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0748 1.4297 0.0000 4 6 2.0829 -0.8023 1.1988 5 7 3.2852 -1.4779 0.6969 6 6 3.3086 -1.4983 -0.6470 7 8 4.1848 -2.0001 -1.3188 8 6 2.0833 -0.8031 -1.2000 9 1 2.3593 -0.1320 -2.0134 10 8 1.1071 -1.7779 -1.6526 11 6 1.1240 -2.0972 -2.9563 12 8 1.9277 -1.5789 -3.6948 13 6 0.1400 -3.1012 -3.4990 14 6 0.3714 -3.2818 -5.0006 15 6 -0.6273 -4.3016 -5.5515 16 6 -0.3963 -4.4818 -7.0532 17 6 -1.3796 -5.4867 -7.5957 18 1 -2.0977 -5.9502 -6.9355 19 6 -1.3631 -5.8137 -8.9350 20 7 -0.4889 -5.2489 -9.7391 21 14 -2.5815 -7.0599 -9.6073 22 1 -3.4513 -7.5456 -8.5061 23 1 -3.4188 -6.4191 -10.6530 24 1 -1.8431 -8.2053 -10.1974 25 1 -0.3633 0.5029 -0.8962 26 1 -0.3633 0.5247 0.8836 27 1 -0.3634 -1.0276 0.0126 28 1 1.7139 1.9561 0.8836 29 1 3.1644 1.4033 0.0125 30 1 1.7342 1.9482 -0.8963 31 1 2.3419 -0.1290 2.0160 32 1 1.3485 -1.5352 1.5331 33 1 3.9744 -1.8603 1.2622 34 1 0.2786 -4.0563 -2.9922 35 1 -0.8755 -2.7435 -3.3287 36 1 0.2325 -2.3266 -5.5071 37 1 1.3867 -3.6394 -5.1714 38 1 -0.4881 -5.2567 -5.0449 39 1 -1.6429 -3.9445 -5.3807 40 1 -0.5359 -3.5265 -7.5594 41 1 0.6192 -4.8386 -7.2244 42 1 -0.4771 -5.4792 -10.6813 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001514901060.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:00 Heat of formation + Delta-G solvation = -146.378230 kcal Electronic energy + Delta-G solvation = -22233.080243 eV Core-core repulsion = 18791.346935 eV Total energy + Delta-G solvation = -3441.733308 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.50702 -39.81061 -37.55294 -36.35485 -34.96411 -33.72374 -32.66804 -30.07216 -28.39675 -27.83831 -26.34731 -25.75760 -22.95011 -21.22611 -20.49804 -20.15577 -20.00463 -17.80059 -17.66902 -16.69711 -16.40392 -16.16774 -15.59341 -15.34023 -14.81572 -14.49453 -14.35215 -14.20896 -13.90550 -13.47088 -13.04847 -12.69542 -12.61961 -12.44546 -12.34961 -11.94463 -11.74987 -11.66371 -11.59301 -11.51211 -11.25175 -11.00777 -10.59040 -10.53647 -10.45192 -10.36796 -9.92095 -9.63362 -9.53795 -9.27559 -8.99249 -8.30303 -5.94833 -3.97390 1.82579 2.26157 2.73314 3.00344 3.34014 3.41204 3.45162 3.70641 3.84674 4.17204 4.30350 4.49791 4.68549 4.73470 4.92328 5.03766 5.10144 5.19512 5.25116 5.27288 5.35169 5.40722 5.43781 5.48570 5.64725 5.72651 5.88944 6.07118 6.18809 6.28623 6.37615 6.48602 6.54367 6.78507 6.96767 7.17966 7.74267 7.76674 7.82878 7.89175 8.06248 8.47762 9.10457 9.66409 11.16560 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036855 B = 0.002645 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.541653 B =10582.358781 C =10811.602224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.075 4.075 3 C -0.140 4.140 4 C 0.109 3.891 5 N -0.725 5.725 6 C 0.509 3.491 7 O -0.507 6.507 8 C 0.060 3.940 9 H 0.120 0.880 10 O -0.335 6.335 11 C 0.455 3.545 12 O -0.489 6.489 13 C -0.108 4.108 14 C -0.110 4.110 15 C -0.109 4.109 16 C 0.019 3.981 17 C -0.520 4.520 18 H 0.055 0.945 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.413 0.587 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.049 0.951 39 H 0.049 0.951 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 13.368 27.066 30.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.076 4.076 3 C -0.198 4.198 4 C -0.015 4.015 5 N -0.383 5.383 6 C 0.292 3.708 7 O -0.381 6.381 8 C 0.001 3.999 9 H 0.137 0.863 10 O -0.253 6.253 11 C 0.297 3.703 12 O -0.373 6.373 13 C -0.145 4.145 14 C -0.147 4.147 15 C -0.147 4.147 16 C -0.018 4.018 17 C -0.558 4.558 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.535 5.535 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.252 0.748 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.035 0.965 41 H 0.035 0.965 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.200 13.326 26.212 29.579 hybrid contribution -0.146 -0.767 -0.184 0.802 sum 3.053 12.559 26.029 29.061 Atomic orbital electron populations 1.21659 0.91186 1.03591 1.02572 1.21708 0.98361 0.95101 0.92393 1.21844 1.01297 0.93188 1.03429 1.22300 0.86905 0.95994 0.96349 1.46119 1.24962 1.59830 1.07380 1.20991 0.87336 0.79484 0.82962 1.90824 1.39748 1.44861 1.62667 1.23392 0.87365 0.90898 0.98268 0.86256 1.86641 1.53329 1.56697 1.28595 1.24413 0.84348 0.81947 0.79573 1.90703 1.37638 1.50858 1.58144 1.21616 0.97315 0.96710 0.98867 1.21600 1.01570 1.01413 0.90138 1.21645 0.96719 0.96370 0.99943 1.19104 0.97128 0.96934 0.88612 1.21309 1.17096 1.23817 0.93587 0.92644 1.25047 0.95840 0.96490 0.97233 1.69989 1.35665 1.43219 1.04578 0.86549 0.81235 0.81323 0.78960 1.19759 1.21054 1.21048 0.91651 0.91687 0.90786 0.90815 0.92109 0.91272 0.89636 0.90099 0.74757 0.87845 0.87724 0.91452 0.91428 0.93199 0.93190 0.96523 0.96508 0.93084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 8.01 37.16 0.30 -0.45 16 2 C -0.07 -0.49 0.98 -152.87 -0.15 -0.64 16 3 C -0.14 -0.71 8.48 37.16 0.32 -0.40 16 4 C 0.11 0.56 6.90 -3.12 -0.02 0.54 16 5 N -0.73 -5.76 6.24 -59.17 -0.37 -6.13 16 6 C 0.51 6.45 8.13 -10.83 -0.09 6.36 16 7 O -0.51 -8.96 18.03 5.56 0.10 -8.86 16 8 C 0.06 0.67 2.69 -26.71 -0.07 0.59 16 9 H 0.12 1.48 6.91 -51.93 -0.36 1.12 16 10 O -0.34 -4.13 8.36 -39.26 -0.33 -4.46 16 11 C 0.45 6.81 7.96 36.00 0.29 7.09 16 12 O -0.49 -9.06 15.19 -18.75 -0.28 -9.34 16 13 C -0.11 -1.47 5.81 -27.89 -0.16 -1.63 16 14 C -0.11 -1.95 4.50 -26.73 -0.12 -2.07 16 15 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 16 C 0.02 0.51 4.97 -27.89 -0.14 0.37 16 17 C -0.52 -14.99 9.11 -34.44 -0.31 -15.31 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 20 N -0.90 -27.63 13.29 55.43 0.74 -26.90 16 21 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.47 7.35 -51.93 -0.38 0.09 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.23 7.91 -51.93 -0.41 -0.18 16 32 H 0.08 0.36 7.87 -51.93 -0.41 -0.04 16 33 H 0.41 2.53 8.96 -40.82 -0.37 2.16 16 34 H 0.10 1.26 8.14 -51.92 -0.42 0.84 16 35 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 37 H 0.07 1.30 8.10 -51.93 -0.42 0.88 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -36.38 350.93 -7.24 -43.62 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -6.96 Total: -3.77 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.40 Total: -6.40 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.37 Total: -33.03 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.51 Total: -22.66 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.38 -7.24 -43.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001514901060.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.756 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds