Wall clock time and date at job start Tue Mar 31 2020 06:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.33089 * 117.74737 * 2 1 4 4 O 1.21281 * 118.32747 * 2.23191 * 3 2 1 5 5 C 1.50172 * 123.42501 * 182.38668 * 3 2 1 6 6 C 1.53076 * 109.89136 * 342.23522 * 5 3 2 7 7 C 1.53341 * 108.42266 * 48.89831 * 6 5 3 8 8 C 1.45751 * 117.94216 * 179.79891 * 2 1 3 9 9 H 1.09002 * 109.29711 * 281.02605 * 8 2 1 10 10 C 1.50701 * 109.30488 * 40.60740 * 8 2 1 11 11 O 1.20823 * 119.99916 * 34.62948 * 10 8 2 12 12 O 1.34232 * 119.99986 * 214.62667 * 10 8 2 13 13 C 1.45198 * 116.99528 * 179.97438 * 12 10 8 14 14 C 1.53006 * 109.46685 * 179.97438 * 13 12 10 15 15 C 1.52999 * 109.47134 * 60.00532 * 14 13 12 16 16 C 1.52998 * 109.47305 * 299.99821 * 14 13 12 17 17 C 1.50699 * 109.47011 * 180.02562 * 14 13 12 18 18 H 1.08008 * 120.00223 * 25.94327 * 17 14 13 19 19 C 1.37875 * 120.00287 * 205.66776 * 17 14 13 20 20 N 1.31513 * 120.00225 * 166.20373 * 19 17 14 21 21 Si 1.86801 * 119.99673 * 346.20483 * 19 17 14 22 22 H 1.48503 * 109.46811 * 95.04975 * 21 19 17 23 23 H 1.48498 * 109.47087 * 215.04336 * 21 19 17 24 24 H 1.48496 * 109.47003 * 335.04825 * 21 19 17 25 25 H 1.09001 * 109.47123 * 207.48924 * 1 2 3 26 26 H 1.09006 * 109.46670 * 327.48488 * 1 2 3 27 27 H 1.08998 * 109.47457 * 87.48113 * 1 2 3 28 28 H 1.09002 * 109.40741 * 222.10690 * 5 3 2 29 29 H 1.08998 * 109.40048 * 102.36372 * 5 3 2 30 30 H 1.08998 * 109.67285 * 289.16457 * 6 5 3 31 31 H 1.09004 * 109.69828 * 168.64875 * 6 5 3 32 32 H 1.09002 * 109.60189 * 172.71231 * 7 6 5 33 33 H 1.09002 * 109.74094 * 52.30508 * 7 6 5 34 34 H 1.09006 * 109.47166 * 60.00208 * 13 12 10 35 35 H 1.09003 * 109.47496 * 299.99893 * 13 12 10 36 36 H 1.08992 * 109.47025 * 197.31556 * 15 14 13 37 37 H 1.09003 * 109.46780 * 317.31403 * 15 14 13 38 38 H 1.08992 * 109.47351 * 77.30834 * 15 14 13 39 39 H 1.08997 * 109.47520 * 307.77770 * 16 14 13 40 40 H 1.09005 * 109.46708 * 67.77583 * 16 14 13 41 41 H 1.08995 * 109.46984 * 187.77092 * 16 14 13 42 42 H 0.97002 * 120.00143 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.0847 1.1778 0.0000 4 8 1.4085 2.1838 0.0416 5 6 3.5781 1.3269 -0.0522 6 6 4.2472 0.0063 0.3371 7 6 3.5934 -1.1237 -0.4671 8 6 2.1480 -1.2876 0.0045 9 1 2.1430 -1.6945 1.0157 10 6 1.4275 -2.2369 -0.9179 11 8 0.9090 -1.8218 -1.9271 12 8 1.3620 -3.5437 -0.6182 13 6 0.6516 -4.3992 -1.5520 14 6 0.6832 -5.8429 -1.0462 15 6 0.0111 -5.9173 0.3263 16 6 2.1352 -6.3107 -0.9293 17 6 -0.0536 -6.7309 -2.0156 18 1 -0.1334 -6.4470 -3.0546 19 6 -0.6208 -7.9086 -1.5773 20 7 -1.4841 -8.5457 -2.3379 21 14 -0.1632 -8.5994 0.0969 22 1 -1.1615 -8.1584 1.1039 23 1 -0.1471 -10.0829 0.0327 24 1 1.1826 -8.1059 0.4849 25 1 -0.3633 -0.9116 0.4744 26 1 -0.3633 0.8666 0.5524 27 1 -0.3634 0.0452 -1.0266 28 1 3.8885 2.1083 0.6415 29 1 3.8794 1.6013 -1.0631 30 1 4.1095 -0.1746 1.4031 31 1 5.3117 0.0521 0.1071 32 1 4.1392 -2.0528 -0.3027 33 1 3.6057 -0.8753 -1.5284 34 1 1.1306 -4.3465 -2.5297 35 1 -0.3828 -4.0656 -1.6357 36 1 0.2947 -6.8468 0.8197 37 1 0.3314 -5.0709 0.9339 38 1 -1.0714 -5.8870 0.2029 39 1 2.6526 -6.1287 -1.8712 40 1 2.6311 -5.7598 -0.1300 41 1 2.1563 -7.3767 -0.7031 42 1 -1.8835 -9.3741 -2.0294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001518118236.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:17 Heat of formation + Delta-G solvation = -110.153369 kcal Electronic energy + Delta-G solvation = -23437.742808 eV Core-core repulsion = 19997.580328 eV Total energy + Delta-G solvation = -3440.162480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.22863 -39.79937 -37.29347 -36.35687 -35.21775 -34.31872 -31.82604 -30.55370 -27.39887 -26.79973 -26.36775 -25.30933 -24.79174 -22.60494 -21.25780 -19.27221 -18.87704 -17.80588 -17.02237 -16.77938 -16.17775 -16.03072 -15.79764 -15.31514 -15.03754 -14.63687 -14.17007 -13.83652 -13.50891 -13.45650 -13.06825 -12.66742 -12.61744 -12.37564 -12.24010 -12.10974 -11.96195 -11.83132 -11.54875 -11.40691 -11.31084 -10.69788 -10.46267 -10.38038 -10.26259 -10.19164 -9.88049 -9.79848 -9.19678 -8.96876 -8.74803 -8.53899 -6.22938 -4.21090 2.11101 2.34736 2.66535 3.02786 3.22780 3.29165 3.36594 4.18622 4.25123 4.30037 4.40780 4.43261 4.82125 4.89905 5.00679 5.13168 5.20167 5.33275 5.38698 5.46966 5.50450 5.54610 5.69717 5.76670 5.80345 5.83046 6.02400 6.07118 6.14498 6.42967 6.46555 6.61095 6.67241 6.75500 6.92598 7.12967 7.15099 7.38045 7.62290 7.87432 7.97637 8.35090 8.80317 9.40867 10.89744 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.003983 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.779865 B = 7028.331357 C = 7285.665165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.589 5.589 3 C 0.521 3.479 4 O -0.551 6.551 5 C -0.136 4.136 6 C -0.120 4.120 7 C -0.129 4.129 8 C 0.154 3.846 9 H 0.110 0.890 10 C 0.445 3.555 11 O -0.498 6.498 12 O -0.350 6.350 13 C 0.092 3.908 14 C 0.045 3.955 15 C -0.161 4.161 16 C -0.140 4.140 17 C -0.521 4.521 18 H 0.076 0.924 19 C 0.079 3.921 20 N -0.888 5.888 21 Si 0.893 3.107 22 H -0.287 1.287 23 H -0.305 1.305 24 H -0.251 1.251 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.057 0.943 39 H 0.041 0.959 40 H 0.031 0.969 41 H 0.055 0.945 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.673 14.295 7.977 20.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.323 5.323 3 C 0.310 3.690 4 O -0.430 6.430 5 C -0.176 4.176 6 C -0.157 4.157 7 C -0.167 4.167 8 C 0.049 3.951 9 H 0.128 0.872 10 C 0.285 3.715 11 O -0.386 6.386 12 O -0.266 6.266 13 C 0.019 3.981 14 C 0.044 3.956 15 C -0.217 4.217 16 C -0.198 4.198 17 C -0.558 4.558 18 H 0.094 0.906 19 C -0.124 4.124 20 N -0.524 5.524 21 Si 0.726 3.274 22 H -0.214 1.214 23 H -0.234 1.234 24 H -0.178 1.178 25 H 0.087 0.913 26 H 0.101 0.899 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 11.019 14.731 7.635 19.917 hybrid contribution -0.082 -0.694 0.569 0.901 sum 10.937 14.037 8.203 19.595 Atomic orbital electron populations 1.21845 0.78780 1.03039 1.03338 1.46953 1.07971 1.04670 1.72703 1.20062 0.91062 0.82201 0.75653 1.90724 1.66465 1.35371 1.50416 1.21707 0.90857 0.99853 1.05160 1.21658 1.00581 0.92774 1.00728 1.21905 0.91626 1.01484 1.01693 1.20574 0.92612 0.82258 0.99694 0.87248 1.23551 0.78708 0.83502 0.85736 1.90679 1.43257 1.78260 1.26374 1.86484 1.69703 1.17813 1.52563 1.23580 0.94934 0.89244 0.90327 1.18576 0.93921 0.89121 0.94006 1.22378 1.01291 1.00122 0.97942 1.22167 0.97431 1.00975 0.99225 1.20670 1.34459 1.04754 0.95937 0.90640 1.24957 0.93403 0.96723 0.97359 1.69948 1.26351 1.17653 1.38458 0.87072 0.79924 0.76112 0.84253 1.21447 1.23407 1.17759 0.91323 0.89932 0.91318 0.87866 0.87977 0.90489 0.89579 0.88180 0.89901 0.91805 0.91479 0.93414 0.93503 0.92355 0.93964 0.95044 0.92658 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.93 8.83 59.85 0.53 1.46 16 2 N -0.59 -7.26 2.95 -176.58 -0.52 -7.78 16 3 C 0.52 6.46 7.46 -11.99 -0.09 6.37 16 4 O -0.55 -8.83 16.20 5.56 0.09 -8.74 16 5 C -0.14 -1.08 6.03 -28.10 -0.17 -1.25 16 6 C -0.12 -0.72 6.03 -26.52 -0.16 -0.88 16 7 C -0.13 -1.06 5.28 -26.60 -0.14 -1.20 16 8 C 0.15 1.69 3.17 -69.53 -0.22 1.47 16 9 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 10 C 0.44 6.69 6.00 36.01 0.22 6.90 16 11 O -0.50 -8.99 15.15 -18.75 -0.28 -9.27 16 12 O -0.35 -5.84 8.79 -39.26 -0.34 -6.19 16 13 C 0.09 1.82 4.30 37.16 0.16 1.98 16 14 C 0.04 0.98 0.58 -155.66 -0.09 0.89 16 15 C -0.16 -3.36 6.89 37.16 0.26 -3.11 16 16 C -0.14 -2.81 7.82 37.16 0.29 -2.52 16 17 C -0.52 -13.81 8.54 -34.44 -0.29 -14.10 16 18 H 0.08 2.19 8.06 -52.48 -0.42 1.76 16 19 C 0.08 2.17 5.27 -17.82 -0.09 2.07 16 20 N -0.89 -26.13 13.96 55.43 0.77 -25.35 16 21 Si 0.89 21.00 22.80 -169.99 -3.88 17.12 16 22 H -0.29 -6.66 7.09 56.52 0.40 -6.26 16 23 H -0.31 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.25 -5.43 4.47 56.52 0.25 -5.18 16 25 H 0.07 0.81 7.64 -51.93 -0.40 0.42 16 26 H 0.08 1.04 7.20 -51.93 -0.37 0.66 16 27 H 0.07 0.99 7.47 -51.93 -0.39 0.61 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.42 8.13 -51.93 -0.42 -0.01 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 34 H 0.06 1.28 8.13 -51.93 -0.42 0.86 16 35 H 0.07 1.39 8.13 -51.93 -0.42 0.97 16 36 H 0.05 1.01 2.77 -51.93 -0.14 0.87 16 37 H 0.05 0.85 7.25 -51.93 -0.38 0.47 16 38 H 0.06 1.27 7.63 -51.93 -0.40 0.88 16 39 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 40 H 0.03 0.55 7.91 -51.93 -0.41 0.14 16 41 H 0.05 1.16 5.19 -51.93 -0.27 0.89 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 325.48 15.07 4.90 4.90 Total: -1.00 -32.22 325.48 -5.75 -37.98 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -6.69 Total: -0.75 kcal Atomic # 6 Polarization: -2.12 SS G_CDS: 0.19 Total: -1.93 kcal Atomic # 7 Polarization: -33.38 SS G_CDS: 0.25 Total: -33.13 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.54 Total: -24.19 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -3.88 Total: 17.12 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.22 -5.75 -37.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001518118236.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.178 kcal (2) G-P(sol) polarization free energy of solvation -32.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds