Wall clock time and date at job start Tue Mar 31 2020 06:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47413 * 2 1 4 4 C 1.50709 * 109.47080 * 239.99491 * 2 1 3 5 5 H 1.07998 * 119.99654 * 240.00549 * 4 2 1 6 6 C 1.37870 * 119.99487 * 60.00093 * 4 2 1 7 7 N 1.31515 * 120.00542 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99870 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46826 * 60.00207 * 8 6 4 10 10 H 1.48501 * 109.47200 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47034 * 300.00397 * 8 6 4 12 12 C 1.53004 * 109.47212 * 120.00117 * 2 1 3 13 13 O 1.45207 * 109.46944 * 299.99880 * 12 2 1 14 14 C 1.34224 * 116.99919 * 179.97438 * 13 12 2 15 15 O 1.20825 * 120.00370 * 359.97438 * 14 13 12 16 16 C 1.50705 * 119.99656 * 179.97438 * 14 13 12 17 17 C 1.53004 * 109.46971 * 179.97438 * 16 14 13 18 18 H 1.09002 * 109.73662 * 304.59267 * 17 16 14 19 19 C 1.53343 * 109.60201 * 184.18118 * 17 16 14 20 20 C 1.53077 * 108.42279 * 172.71256 * 19 17 16 21 21 C 1.50172 * 109.89053 * 48.90510 * 20 19 17 22 22 O 1.21283 * 118.24665 * 162.39731 * 21 20 19 23 23 N 1.33350 * 123.50704 * 342.41451 * 21 20 19 24 24 C 1.45757 * 124.11230 * 2.22549 * 23 21 20 25 25 H 1.09000 * 109.46834 * 300.00493 * 1 2 3 26 26 H 1.08996 * 109.47148 * 59.99885 * 1 2 3 27 27 H 1.08999 * 109.47510 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46798 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.46653 * 299.99692 * 3 2 1 30 30 H 1.08992 * 109.47201 * 59.99990 * 3 2 1 31 31 H 0.97001 * 120.00087 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47283 * 179.97438 * 12 2 1 33 33 H 1.09003 * 109.47517 * 59.99314 * 12 2 1 34 34 H 1.08995 * 109.47149 * 59.99895 * 16 14 13 35 35 H 1.09004 * 109.46942 * 299.99617 * 16 14 13 36 36 H 1.08996 * 109.67680 * 292.44813 * 19 17 16 37 37 H 1.09003 * 109.67073 * 52.95143 * 19 17 16 38 38 H 1.08997 * 109.39609 * 169.03735 * 20 19 17 39 39 H 1.09004 * 109.39663 * 288.77536 * 20 19 17 40 40 H 0.97002 * 117.94798 * 182.22160 * 23 21 20 41 41 H 1.08995 * 109.30501 * 220.61286 * 24 23 21 42 42 H 1.09002 * 109.29865 * 101.23194 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2305 5 1 2.6532 -1.5887 -1.1312 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3224 -1.1198 -4.0079 9 1 1.8279 -2.5200 -4.0080 10 1 1.8278 -0.4195 -5.2204 11 1 3.8074 -1.1193 -4.0076 12 6 2.0400 -0.7213 1.2493 13 8 1.5560 -0.0368 2.4349 14 6 1.9162 -0.5471 3.6229 15 8 2.6125 -1.5334 3.6707 16 6 1.4522 0.1101 4.8972 17 6 1.9981 -0.6643 6.0985 18 1 1.7029 -1.7111 6.0266 19 6 1.4433 -0.0612 7.3946 20 6 1.8554 -0.9612 8.5622 21 6 3.3241 -1.2635 8.4807 22 8 3.8804 -1.6803 9.4745 23 7 4.0495 -1.0978 7.3740 24 6 3.5237 -0.5620 6.1246 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4423 -0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6768 1.9563 0.8899 31 1 0.7095 1.1616 -3.4845 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2494 34 1 0.3627 0.1103 4.9300 35 1 1.8169 1.1368 4.9301 36 1 1.8533 0.9383 7.5392 37 1 0.3561 -0.0072 7.3382 38 1 1.6417 -0.4542 9.5031 39 1 1.2910 -1.8927 8.5180 40 1 4.9858 -1.3496 7.4022 41 1 3.9369 -1.1260 5.2885 42 1 3.8163 0.4837 6.0297 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525291390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:57 Heat of formation + Delta-G solvation = -166.869988 kcal Electronic energy + Delta-G solvation = -22629.422520 eV Core-core repulsion = 19186.800623 eV Total energy + Delta-G solvation = -3442.621897 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.71049 -40.98290 -38.59931 -37.59023 -36.50675 -34.43531 -33.27043 -32.39093 -28.61008 -27.53791 -27.37130 -26.75135 -25.36328 -23.32095 -21.69474 -20.67358 -20.03559 -18.61568 -18.24827 -17.71164 -17.50932 -17.32632 -16.86085 -16.58158 -16.31728 -15.49065 -15.09458 -14.81912 -14.65921 -14.50986 -14.35786 -14.06043 -13.46201 -13.42558 -13.09272 -13.06078 -12.77147 -12.65479 -12.52437 -12.30780 -12.25994 -12.13077 -12.01741 -11.78149 -11.66344 -11.45385 -11.22016 -11.07684 -10.78027 -10.71512 -10.38949 -10.08669 -8.03973 -6.21995 1.33754 1.44359 1.45162 1.51852 1.60503 1.91607 2.33439 2.46115 3.19497 3.52272 3.64541 3.71166 3.82263 4.03527 4.31148 4.32007 4.36734 4.45019 4.53462 4.62638 4.65951 4.74368 4.77376 4.90537 4.93993 4.98181 5.08539 5.16235 5.22845 5.26295 5.35062 5.41802 5.63590 5.67127 5.75163 5.79322 6.11798 6.21119 6.33788 6.39214 6.81255 6.91405 7.17080 7.46262 8.95085 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.042215 B = 0.003031 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.114561 B = 9234.187160 C = 9571.592905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.061 3.939 3 C -0.119 4.119 4 C -0.537 4.537 5 H 0.048 0.952 6 C 0.030 3.970 7 N -0.899 5.899 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.282 1.282 11 H -0.275 1.275 12 C 0.099 3.901 13 O -0.354 6.354 14 C 0.445 3.555 15 O -0.546 6.546 16 C -0.097 4.097 17 C -0.090 4.090 18 H 0.077 0.923 19 C -0.108 4.108 20 C -0.131 4.131 21 C 0.510 3.490 22 O -0.616 6.616 23 N -0.712 5.712 24 C 0.103 3.897 25 H 0.037 0.963 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.262 0.738 32 H 0.047 0.953 33 H 0.046 0.954 34 H 0.140 0.860 35 H 0.135 0.865 36 H 0.088 0.912 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.398 0.602 41 H 0.075 0.925 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 2.331 17.219 17.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.060 3.940 3 C -0.176 4.176 4 C -0.575 4.575 5 H 0.066 0.934 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.207 1.207 11 H -0.201 1.201 12 C 0.025 3.975 13 O -0.270 6.270 14 C 0.291 3.709 15 O -0.438 6.438 16 C -0.134 4.134 17 C -0.109 4.109 18 H 0.096 0.904 19 C -0.146 4.146 20 C -0.170 4.170 21 C 0.299 3.701 22 O -0.500 6.500 23 N -0.361 5.361 24 C -0.021 4.021 25 H 0.056 0.944 26 H 0.080 0.920 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.158 0.842 35 H 0.153 0.847 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.128 0.872 40 H 0.233 0.767 41 H 0.093 0.907 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.526 2.031 17.506 17.690 hybrid contribution 1.138 -1.017 -1.376 2.055 sum -0.388 1.014 16.130 16.167 Atomic orbital electron populations 1.21623 0.97099 0.98524 1.00446 1.18248 0.93608 0.93273 0.88838 1.21618 0.97675 0.97911 1.00441 1.21220 1.32345 1.12496 0.91413 0.93411 1.25472 0.94991 0.95545 1.01064 1.69926 1.36692 1.23205 1.23863 0.85766 0.78685 0.78790 0.79286 1.20087 1.20725 1.20068 1.23144 0.97351 0.94977 0.81997 1.86513 1.69385 1.55821 1.15319 1.24727 0.76860 0.82385 0.86949 1.90608 1.37369 1.27366 1.88419 1.21540 1.05446 1.01563 0.84855 1.21281 0.93831 1.01093 0.94705 0.90446 1.21729 1.03748 0.99029 0.90062 1.21682 0.89419 1.03511 1.02405 1.20950 0.91560 0.75917 0.81679 1.90729 1.73397 1.49576 1.36266 1.45541 1.14289 1.64311 1.11935 1.21753 0.95188 1.00144 0.84976 0.94446 0.92028 0.96300 0.96244 0.92054 0.94432 0.92849 0.93423 0.93596 0.84244 0.84692 0.89312 0.87094 0.86709 0.87244 0.76694 0.90692 0.89848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.11 71.98 0.58 -4.87 16 2 C 0.06 2.84 0.58 -52.92 -0.03 2.81 16 3 C -0.12 -5.42 8.11 71.98 0.58 -4.83 16 4 C -0.54 -28.16 8.01 25.60 0.21 -27.95 16 5 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 6 C 0.03 1.54 5.15 84.65 0.44 1.98 16 7 N -0.90 -47.93 9.35 21.44 0.20 -47.73 16 8 Si 0.95 41.86 29.54 68.60 2.03 43.89 16 9 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 12 C 0.10 4.10 4.26 71.98 0.31 4.40 16 13 O -0.35 -12.09 8.88 -51.35 -0.46 -12.54 16 14 C 0.45 12.20 7.71 71.24 0.55 12.75 16 15 O -0.55 -18.12 13.76 21.97 0.30 -17.82 16 16 C -0.10 -1.38 5.29 29.85 0.16 -1.22 16 17 C -0.09 -1.25 1.90 -10.70 -0.02 -1.27 16 18 H 0.08 1.34 7.96 -2.39 -0.02 1.32 16 19 C -0.11 -0.89 5.33 30.73 0.16 -0.73 16 20 C -0.13 -1.67 6.03 29.71 0.18 -1.49 16 21 C 0.51 11.02 7.71 87.71 0.68 11.69 16 22 O -0.62 -19.04 17.78 -3.04 -0.05 -19.09 16 23 N -0.71 -13.60 5.45 -467.31 -2.55 -16.15 16 24 C 0.10 1.74 6.10 86.49 0.53 2.27 16 25 H 0.04 1.51 7.68 -2.39 -0.02 1.49 16 26 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 27 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 3.09 6.07 -2.38 -0.01 3.07 16 30 H 0.04 1.51 7.68 -2.39 -0.02 1.49 16 31 H 0.26 13.41 8.31 -92.71 -0.77 12.64 16 32 H 0.05 2.02 8.13 -2.39 -0.02 2.00 16 33 H 0.05 1.96 8.13 -2.39 -0.02 1.94 16 34 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.14 1.31 8.12 -2.39 -0.02 1.29 16 36 H 0.09 0.57 8.13 -2.39 -0.02 0.55 16 37 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.40 7.53 8.80 -92.71 -0.82 6.72 16 41 H 0.07 1.66 6.17 -2.39 -0.01 1.65 16 42 H 0.08 1.12 8.09 -2.39 -0.02 1.10 16 Total: -1.00 -67.35 336.32 3.99 -63.36 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: 0.20 Total: 12.55 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 4.32 Total: -6.47 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -2.34 Total: -63.88 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -0.21 Total: -49.45 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -67.35 3.99 -63.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525291390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.512 kcal (2) G-P(sol) polarization free energy of solvation -67.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds