Wall clock time and date at job start Tue Mar 31 2020 06:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46996 * 2 1 4 4 C 1.50701 * 109.47121 * 240.00264 * 2 1 3 5 5 H 1.08000 * 120.00298 * 240.00036 * 4 2 1 6 6 C 1.37884 * 119.99819 * 59.99734 * 4 2 1 7 7 N 1.31511 * 120.00198 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99784 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47015 * 90.00035 * 8 6 4 10 10 H 1.48497 * 109.46586 * 210.00118 * 8 6 4 11 11 H 1.48502 * 109.46870 * 329.99917 * 8 6 4 12 12 C 1.52995 * 109.47148 * 120.00504 * 2 1 3 13 13 O 1.45199 * 109.47181 * 299.99472 * 12 2 1 14 14 C 1.34227 * 117.00556 * 180.02562 * 13 12 2 15 15 O 1.20832 * 119.99766 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00470 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.47102 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.73396 * 54.59920 * 17 16 14 19 19 C 1.53352 * 109.60097 * 174.99988 * 17 16 14 20 20 C 1.53064 * 108.42217 * 187.29029 * 19 17 16 21 21 C 1.50176 * 109.89282 * 311.09831 * 20 19 17 22 22 O 1.21284 * 118.24680 * 197.29935 * 21 20 19 23 23 N 1.33359 * 123.50823 * 17.58506 * 21 20 19 24 24 C 1.45756 * 124.10453 * 357.77900 * 23 21 20 25 25 H 1.09000 * 109.46695 * 299.99575 * 1 2 3 26 26 H 1.08996 * 109.47305 * 59.99432 * 1 2 3 27 27 H 1.08997 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46710 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47694 * 299.99881 * 3 2 1 30 30 H 1.09000 * 109.47051 * 60.00643 * 3 2 1 31 31 H 0.96992 * 120.00216 * 180.02562 * 7 6 4 32 32 H 1.09006 * 109.47001 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47720 * 59.99883 * 12 2 1 34 34 H 1.08998 * 109.46938 * 60.00238 * 16 14 13 35 35 H 1.09003 * 109.47134 * 300.00149 * 16 14 13 36 36 H 1.08995 * 109.66935 * 67.55706 * 19 17 16 37 37 H 1.08995 * 109.67350 * 307.02410 * 19 17 16 38 38 H 1.09000 * 109.39802 * 190.97333 * 20 19 17 39 39 H 1.08994 * 109.40173 * 71.23213 * 20 19 17 40 40 H 0.97002 * 117.94440 * 177.75115 * 23 21 20 41 41 H 1.09001 * 109.29565 * 258.76327 * 24 23 21 42 42 H 1.09002 * 109.13365 * 139.27583 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0081 9 1 1.3427 -2.1615 -4.4120 10 1 2.4864 -0.1411 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 6 2.0400 -0.7213 1.2491 13 8 1.5561 -0.0369 2.4347 14 6 1.9172 -0.5467 3.6228 15 8 2.6149 -1.5320 3.6705 16 6 1.4524 0.1098 4.8971 17 6 1.9996 -0.6638 6.0984 18 1 3.0834 -0.7478 6.0194 19 6 1.6335 0.0710 7.3937 20 6 2.3445 -0.6205 8.5595 21 6 2.1216 -2.1038 8.4866 22 8 2.3334 -2.7657 9.4806 23 7 1.7084 -2.7329 7.3857 24 6 1.3781 -2.0605 6.1354 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7088 1.1615 -3.4843 32 1 3.1301 -0.7209 1.2493 33 1 1.6767 -1.7490 1.2492 34 1 0.3629 0.1083 4.9302 35 1 1.8155 1.1371 4.9301 36 1 0.5550 0.0311 7.5459 37 1 1.9576 1.1098 7.3303 38 1 1.9486 -0.2408 9.5015 39 1 3.4130 -0.4118 8.5071 40 1 1.6228 -3.6986 7.4190 41 1 0.2950 -1.9753 6.0475 42 1 1.7622 -2.6480 5.3015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525291392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:00 Heat of formation + Delta-G solvation = -148.286298 kcal Electronic energy + Delta-G solvation = -22625.566579 eV Core-core repulsion = 19183.750531 eV Total energy + Delta-G solvation = -3441.816048 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72865 -39.87831 -37.38303 -36.34858 -34.89621 -33.66650 -31.75533 -31.25358 -27.59573 -25.67642 -25.64838 -25.12039 -24.60160 -22.45956 -20.55695 -19.34429 -18.90615 -17.42829 -17.30280 -16.44360 -16.14482 -15.87876 -15.70984 -15.51099 -14.80266 -14.57400 -14.14079 -13.65801 -13.52726 -13.29080 -13.11941 -12.71881 -12.35955 -11.91829 -11.81960 -11.59918 -11.52447 -11.30270 -11.21185 -11.17747 -11.00396 -10.74977 -10.46931 -10.28182 -10.12427 -9.97325 -9.91817 -9.47380 -9.36891 -9.23115 -8.81185 -8.42366 -6.06760 -4.18608 2.45311 2.49181 3.08159 3.10942 3.24444 3.31680 3.35713 4.22067 4.31054 4.33413 4.41637 4.50238 4.89975 5.00372 5.07803 5.19840 5.27466 5.29086 5.36666 5.45548 5.47532 5.53307 5.74702 5.94069 6.02506 6.03926 6.40842 6.55790 6.69173 6.92506 7.00640 7.07756 7.09194 7.13965 7.34807 7.56676 7.65376 7.99958 8.01244 8.08071 8.17378 8.34142 8.81474 9.47325 10.94443 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.042239 B = 0.003029 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.737855 B = 9241.645727 C = 9575.454441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.070 3.930 3 C -0.130 4.130 4 C -0.514 4.514 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.882 5.882 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.085 3.915 13 O -0.348 6.348 14 C 0.451 3.549 15 O -0.520 6.520 16 C -0.109 4.109 17 C -0.093 4.093 18 H 0.092 0.908 19 C -0.120 4.120 20 C -0.134 4.134 21 C 0.518 3.482 22 O -0.566 6.566 23 N -0.715 5.715 24 C 0.105 3.895 25 H 0.016 0.984 26 H 0.084 0.916 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.084 0.916 30 H 0.016 0.984 31 H 0.261 0.739 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.400 0.600 41 H 0.065 0.935 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.090 1.076 16.239 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.070 3.930 3 C -0.187 4.187 4 C -0.552 4.552 5 H 0.075 0.925 6 C -0.133 4.133 7 N -0.520 5.520 8 Si 0.723 3.277 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.012 3.988 13 O -0.263 6.263 14 C 0.294 3.706 15 O -0.411 6.411 16 C -0.147 4.147 17 C -0.112 4.112 18 H 0.110 0.890 19 C -0.157 4.157 20 C -0.174 4.174 21 C 0.305 3.695 22 O -0.446 6.446 23 N -0.366 5.366 24 C -0.019 4.019 25 H 0.035 0.965 26 H 0.103 0.897 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.103 0.897 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.235 0.765 41 H 0.084 0.916 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.838 0.820 16.541 16.582 hybrid contribution 0.374 -0.965 -1.105 1.514 sum -0.464 -0.144 15.435 15.443 Atomic orbital electron populations 1.21772 0.97336 0.98924 1.00691 1.18240 0.93403 0.93069 0.88324 1.21773 0.98079 0.98205 1.00692 1.20944 1.32062 1.12330 0.89844 0.92519 1.24856 0.94777 0.94876 0.98801 1.69820 1.36318 1.22518 1.23363 0.86544 0.79303 0.79398 0.82475 1.20618 1.21123 1.19890 1.23677 0.98182 0.95741 0.81192 1.86524 1.68927 1.55867 1.15019 1.23538 0.77707 0.82654 0.86655 1.90607 1.36087 1.26071 1.88308 1.21361 1.03688 1.01116 0.88544 1.21294 1.02310 0.93997 0.93595 0.88956 1.21747 1.01280 1.00043 0.92665 1.21625 1.03602 0.91174 1.00982 1.20224 0.75893 0.91063 0.82347 1.90754 1.52367 1.67079 1.34407 1.45476 1.67697 1.11357 1.12090 1.21703 0.99712 0.94239 0.86285 0.96459 0.89732 0.95860 0.95844 0.89727 0.96447 0.92862 0.92540 0.92538 0.87437 0.87060 0.90672 0.89860 0.87999 0.88068 0.76513 0.91636 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.99 8.11 37.16 0.30 -2.69 16 2 C 0.07 1.65 0.58 -155.66 -0.09 1.56 16 3 C -0.13 -3.01 8.11 37.16 0.30 -2.71 16 4 C -0.51 -13.38 8.01 -34.44 -0.28 -13.66 16 5 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -23.45 9.35 55.43 0.52 -22.93 16 8 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 12 C 0.08 1.77 4.26 37.15 0.16 1.93 16 13 O -0.35 -6.25 8.88 -39.25 -0.35 -6.59 16 14 C 0.45 6.63 7.72 36.00 0.28 6.91 16 15 O -0.52 -8.81 13.81 -18.76 -0.26 -9.07 16 16 C -0.11 -0.99 5.29 -27.88 -0.15 -1.14 16 17 C -0.09 -0.79 1.89 -90.48 -0.17 -0.96 16 18 H 0.09 0.90 7.93 -51.93 -0.41 0.49 16 19 C -0.12 -0.75 5.33 -26.52 -0.14 -0.89 16 20 C -0.13 -1.03 6.03 -28.10 -0.17 -1.20 16 21 C 0.52 5.84 7.71 -11.87 -0.09 5.74 16 22 O -0.57 -8.71 17.78 5.55 0.10 -8.61 16 23 N -0.72 -7.09 5.45 -61.39 -0.33 -7.42 16 24 C 0.10 0.97 6.11 -4.49 -0.03 0.94 16 25 H 0.02 0.35 7.68 -51.93 -0.40 -0.05 16 26 H 0.08 2.14 6.07 -51.93 -0.32 1.82 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 2.14 6.07 -51.93 -0.32 1.83 16 30 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 31 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 32 H 0.06 1.20 8.13 -51.93 -0.42 0.78 16 33 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 34 H 0.11 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.43 8.13 -51.93 -0.42 0.00 16 37 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.40 3.74 8.80 -40.82 -0.36 3.38 16 41 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 42 H 0.10 1.09 6.25 -51.93 -0.32 0.77 16 LS Contribution 336.39 15.07 5.07 5.07 Total: -1.00 -30.64 336.39 -7.15 -37.79 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: -6.71 Total: 0.84 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -0.17 Total: -4.47 kcal Atomic # 7 Polarization: -30.54 SS G_CDS: 0.18 Total: -30.35 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.51 Total: -24.27 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -30.64 -7.15 -37.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525291392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.497 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds