Wall clock time and date at job start Tue Mar 31 2020 06:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46996 * 2 1 4 4 C 1.50701 * 109.47121 * 240.00264 * 2 1 3 5 5 H 1.08000 * 120.00298 * 240.00036 * 4 2 1 6 6 C 1.37884 * 119.99819 * 59.99734 * 4 2 1 7 7 N 1.31511 * 120.00198 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 119.99784 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47015 * 90.00035 * 8 6 4 10 10 H 1.48497 * 109.46586 * 210.00118 * 8 6 4 11 11 H 1.48502 * 109.46870 * 329.99917 * 8 6 4 12 12 C 1.52995 * 109.47148 * 120.00504 * 2 1 3 13 13 O 1.45199 * 109.47181 * 299.99472 * 12 2 1 14 14 C 1.34227 * 117.00556 * 180.02562 * 13 12 2 15 15 O 1.20832 * 119.99766 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00470 * 180.02562 * 14 13 12 17 17 C 1.53004 * 109.47102 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.73396 * 54.59920 * 17 16 14 19 19 C 1.53352 * 109.60097 * 174.99988 * 17 16 14 20 20 C 1.53064 * 108.42217 * 187.29029 * 19 17 16 21 21 C 1.50176 * 109.89282 * 311.09831 * 20 19 17 22 22 O 1.21284 * 118.24680 * 197.29935 * 21 20 19 23 23 N 1.33359 * 123.50823 * 17.58506 * 21 20 19 24 24 C 1.45756 * 124.10453 * 357.77900 * 23 21 20 25 25 H 1.09000 * 109.46695 * 299.99575 * 1 2 3 26 26 H 1.08996 * 109.47305 * 59.99432 * 1 2 3 27 27 H 1.08997 * 109.46906 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46710 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47694 * 299.99881 * 3 2 1 30 30 H 1.09000 * 109.47051 * 60.00643 * 3 2 1 31 31 H 0.96992 * 120.00216 * 180.02562 * 7 6 4 32 32 H 1.09006 * 109.47001 * 180.02562 * 12 2 1 33 33 H 1.08997 * 109.47720 * 59.99883 * 12 2 1 34 34 H 1.08998 * 109.46938 * 60.00238 * 16 14 13 35 35 H 1.09003 * 109.47134 * 300.00149 * 16 14 13 36 36 H 1.08995 * 109.66935 * 67.55706 * 19 17 16 37 37 H 1.08995 * 109.67350 * 307.02410 * 19 17 16 38 38 H 1.09000 * 109.39802 * 190.97333 * 20 19 17 39 39 H 1.08994 * 109.40173 * 71.23213 * 20 19 17 40 40 H 0.97002 * 117.94440 * 177.75115 * 23 21 20 41 41 H 1.09001 * 109.29565 * 258.76327 * 24 23 21 42 42 H 1.09002 * 109.13365 * 139.27583 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1202 -4.0081 9 1 1.3427 -2.1615 -4.4120 10 1 2.4864 -0.1411 -5.1123 11 1 3.6293 -1.7581 -3.7123 12 6 2.0400 -0.7213 1.2491 13 8 1.5561 -0.0369 2.4347 14 6 1.9172 -0.5467 3.6228 15 8 2.6149 -1.5320 3.6705 16 6 1.4524 0.1098 4.8971 17 6 1.9996 -0.6638 6.0984 18 1 3.0834 -0.7478 6.0194 19 6 1.6335 0.0710 7.3937 20 6 2.3445 -0.6205 8.5595 21 6 2.1216 -2.1038 8.4866 22 8 2.3334 -2.7657 9.4806 23 7 1.7084 -2.7329 7.3857 24 6 1.3781 -2.0605 6.1354 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.7088 1.1615 -3.4843 32 1 3.1301 -0.7209 1.2493 33 1 1.6767 -1.7490 1.2492 34 1 0.3629 0.1083 4.9302 35 1 1.8155 1.1371 4.9301 36 1 0.5550 0.0311 7.5459 37 1 1.9576 1.1098 7.3303 38 1 1.9486 -0.2408 9.5015 39 1 3.4130 -0.4118 8.5071 40 1 1.6228 -3.6986 7.4190 41 1 0.2950 -1.9753 6.0475 42 1 1.7622 -2.6480 5.3015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525291392.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:46:00 Heat of formation + Delta-G solvation = -167.112985 kcal Electronic energy + Delta-G solvation = -22626.382965 eV Core-core repulsion = 19183.750531 eV Total energy + Delta-G solvation = -3442.632435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.70710 -40.98352 -38.59763 -37.59327 -36.50680 -34.43509 -33.27166 -32.39325 -28.61056 -27.53797 -27.37198 -26.75225 -25.36238 -23.32198 -21.69351 -20.67403 -20.03603 -18.61275 -18.24778 -17.71528 -17.50853 -17.32405 -16.86355 -16.58237 -16.32042 -15.48651 -15.09293 -14.82352 -14.66004 -14.51085 -14.35501 -14.06284 -13.46662 -13.42438 -13.09631 -13.06709 -12.78217 -12.63034 -12.52756 -12.31276 -12.26002 -12.13205 -12.01140 -11.78100 -11.66374 -11.45621 -11.22129 -11.07847 -10.78259 -10.70952 -10.39267 -10.08978 -8.04212 -6.22046 1.33814 1.42741 1.45175 1.53281 1.60465 1.91622 2.33419 2.45985 3.19346 3.52273 3.64480 3.71100 3.82253 4.03413 4.31167 4.32025 4.36813 4.44963 4.53471 4.62903 4.65865 4.74213 4.77081 4.90536 4.93893 4.98190 5.08533 5.16161 5.22852 5.26294 5.35107 5.41813 5.63753 5.67128 5.75197 5.79218 6.11760 6.21109 6.33663 6.39227 6.81363 6.91429 7.17065 7.46210 8.95066 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.042239 B = 0.003029 C = 0.002923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.737855 B = 9241.645727 C = 9575.454441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.060 3.940 3 C -0.119 4.119 4 C -0.535 4.535 5 H 0.047 0.953 6 C 0.029 3.971 7 N -0.899 5.899 8 Si 0.949 3.051 9 H -0.277 1.277 10 H -0.282 1.282 11 H -0.274 1.274 12 C 0.099 3.901 13 O -0.354 6.354 14 C 0.445 3.555 15 O -0.547 6.547 16 C -0.097 4.097 17 C -0.090 4.090 18 H 0.077 0.923 19 C -0.108 4.108 20 C -0.131 4.131 21 C 0.510 3.490 22 O -0.616 6.616 23 N -0.712 5.712 24 C 0.104 3.896 25 H 0.037 0.963 26 H 0.061 0.939 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.262 0.738 32 H 0.045 0.955 33 H 0.047 0.953 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.109 0.891 40 H 0.398 0.602 41 H 0.084 0.916 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.662 2.364 17.239 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.060 3.940 3 C -0.177 4.177 4 C -0.573 4.573 5 H 0.066 0.934 6 C -0.171 4.171 7 N -0.537 5.537 8 Si 0.775 3.225 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.199 1.199 12 C 0.025 3.975 13 O -0.270 6.270 14 C 0.291 3.709 15 O -0.438 6.438 16 C -0.134 4.134 17 C -0.109 4.109 18 H 0.095 0.905 19 C -0.146 4.146 20 C -0.170 4.170 21 C 0.299 3.701 22 O -0.500 6.500 23 N -0.361 5.361 24 C -0.020 4.020 25 H 0.056 0.944 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.037 0.963 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.107 0.893 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.127 0.873 40 H 0.233 0.767 41 H 0.103 0.897 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.418 2.118 17.528 17.712 hybrid contribution 0.560 -1.410 -1.379 2.050 sum -0.858 0.708 16.149 16.187 Atomic orbital electron populations 1.21618 0.97032 0.98553 1.00437 1.18250 0.93652 0.93245 0.88850 1.21623 0.97663 0.97962 1.00446 1.21244 1.32266 1.12440 0.91396 0.93434 1.25477 0.95020 0.95531 1.01072 1.69929 1.36759 1.23204 1.23802 0.85704 0.78707 0.78468 0.79615 1.20330 1.20730 1.19893 1.23141 0.97272 0.95048 0.81998 1.86510 1.69315 1.55900 1.15317 1.24729 0.76865 0.82377 0.86951 1.90613 1.37306 1.27437 1.88434 1.21538 1.05271 1.01742 0.84849 1.21282 1.01330 0.93614 0.94709 0.90477 1.21729 1.01983 1.00768 0.90087 1.21680 1.04492 0.88406 1.02442 1.20954 0.74881 0.92606 0.81667 1.90729 1.54656 1.68465 1.36117 1.45547 1.66824 1.11551 1.12176 1.21750 1.00800 0.94533 0.84907 0.94439 0.92058 0.96239 0.96288 0.92031 0.94437 0.92861 0.93612 0.93418 0.84685 0.84235 0.89276 0.87115 0.86702 0.87268 0.76681 0.89750 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.41 8.11 71.98 0.58 -4.83 16 2 C 0.06 2.83 0.58 -52.93 -0.03 2.80 16 3 C -0.12 -5.46 8.11 71.98 0.58 -4.87 16 4 C -0.54 -28.09 8.01 25.60 0.21 -27.88 16 5 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 6 C 0.03 1.52 5.15 84.66 0.44 1.96 16 7 N -0.90 -47.91 9.35 21.45 0.20 -47.71 16 8 Si 0.95 41.89 29.54 68.60 2.03 43.92 16 9 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 12 C 0.10 4.10 4.26 71.98 0.31 4.41 16 13 O -0.35 -12.09 8.88 -51.38 -0.46 -12.55 16 14 C 0.45 12.21 7.72 71.24 0.55 12.76 16 15 O -0.55 -18.17 13.81 21.95 0.30 -17.86 16 16 C -0.10 -1.38 5.29 29.85 0.16 -1.22 16 17 C -0.09 -1.26 1.89 -10.70 -0.02 -1.28 16 18 H 0.08 1.35 7.93 -2.39 -0.02 1.33 16 19 C -0.11 -0.89 5.33 30.73 0.16 -0.73 16 20 C -0.13 -1.67 6.03 29.71 0.18 -1.49 16 21 C 0.51 11.00 7.71 87.71 0.68 11.68 16 22 O -0.62 -19.03 17.78 -3.04 -0.05 -19.08 16 23 N -0.71 -13.55 5.45 -467.31 -2.55 -16.10 16 24 C 0.10 1.74 6.11 86.49 0.53 2.27 16 25 H 0.04 1.50 7.68 -2.39 -0.02 1.49 16 26 H 0.06 3.09 6.07 -2.39 -0.01 3.07 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.06 3.10 6.07 -2.39 -0.01 3.09 16 30 H 0.04 1.51 7.68 -2.39 -0.02 1.49 16 31 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 32 H 0.05 1.96 8.13 -2.38 -0.02 1.94 16 33 H 0.05 2.02 8.13 -2.39 -0.02 2.00 16 34 H 0.14 1.30 8.10 -2.39 -0.02 1.29 16 35 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 0.56 8.13 -2.39 -0.02 0.54 16 37 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 38 H 0.11 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.40 7.50 8.80 -92.71 -0.82 6.68 16 41 H 0.08 1.12 8.08 -2.39 -0.02 1.10 16 42 H 0.07 1.63 6.25 -2.39 -0.01 1.62 16 Total: -1.00 -67.45 336.39 3.99 -63.46 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.20 Total: 12.36 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: 4.32 Total: -6.43 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: -2.35 Total: -63.81 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -0.21 Total: -49.49 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -67.45 3.99 -63.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525291392.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.656 kcal (2) G-P(sol) polarization free energy of solvation -67.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds