Wall clock time and date at job start Tue Mar 31 2020 05:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00178 * 2 1 4 4 H 1.48501 * 109.47228 * 180.02562 * 3 2 1 5 5 H 1.48509 * 109.46987 * 299.99914 * 3 2 1 6 6 H 1.48495 * 109.47325 * 59.99792 * 3 2 1 7 7 C 1.37876 * 119.99659 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99780 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00387 * 0.02562 * 7 2 1 10 10 O 1.42901 * 113.41311 * 313.20245 * 9 7 2 11 11 C 1.53499 * 114.20763 * 179.97438 * 9 7 2 12 12 N 1.47066 * 87.98535 * 220.34622 * 11 9 7 13 13 C 1.34778 * 136.05453 * 207.08490 * 12 11 9 14 14 O 1.21279 * 120.00192 * 0.02562 * 13 12 11 15 15 C 1.50707 * 119.99809 * 180.02562 * 13 12 11 16 16 C 1.52992 * 109.46966 * 180.02562 * 15 13 12 17 17 H 1.09002 * 109.47103 * 304.99703 * 16 15 13 18 18 C 1.52997 * 109.47482 * 64.99950 * 16 15 13 19 19 C 1.53000 * 109.47060 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.47233 * 299.99657 * 19 18 16 21 21 C 1.52997 * 109.46817 * 60.00194 * 20 19 18 22 22 C 1.52999 * 109.46961 * 185.00310 * 16 15 13 23 23 H 1.09002 * 109.46716 * 299.99630 * 22 16 15 24 24 O 1.42900 * 109.47616 * 59.99536 * 22 16 15 25 25 C 1.47065 * 87.88475 * 27.34641 * 12 11 9 26 26 H 0.97002 * 120.00098 * 0.02562 * 1 2 3 27 27 H 0.96700 * 113.99804 * 46.79395 * 10 9 7 28 28 H 1.09004 * 113.46342 * 105.56544 * 11 9 7 29 29 H 1.09000 * 113.47006 * 335.13019 * 11 9 7 30 30 H 1.08996 * 109.46741 * 59.99783 * 15 13 12 31 31 H 1.09001 * 109.46664 * 300.00360 * 15 13 12 32 32 H 1.09002 * 109.47153 * 59.99783 * 18 16 15 33 33 H 1.09001 * 109.46832 * 299.99974 * 18 16 15 34 34 H 1.08992 * 109.47399 * 59.99823 * 19 18 16 35 35 H 1.09004 * 109.46724 * 180.02562 * 19 18 16 36 36 H 1.08993 * 109.47662 * 180.02562 * 20 19 18 37 37 H 1.09002 * 109.47075 * 300.00932 * 20 19 18 38 38 H 1.09002 * 109.47153 * 60.00231 * 21 20 19 39 39 H 1.09001 * 109.47289 * 180.02562 * 21 20 19 40 40 H 0.96696 * 114.00289 * 180.02562 * 24 22 16 41 41 H 1.08998 * 113.46943 * 87.43746 * 25 12 11 42 42 H 1.09002 * 113.46648 * 217.87607 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.1892 -2.5419 0.9560 11 6 2.1487 -3.7443 0.0005 12 7 1.2099 -4.3575 -0.9510 13 6 0.8354 -5.6114 -1.2732 14 8 1.3299 -6.5584 -0.6992 15 6 -0.1979 -5.8368 -2.3469 16 6 -0.4399 -7.3381 -2.5147 17 1 0.5080 -7.8391 -2.7117 18 6 -1.0579 -7.9016 -1.2335 19 6 -1.2992 -9.4031 -1.4012 20 6 -2.2533 -9.6385 -2.5739 21 6 -1.6353 -9.0751 -3.8551 22 6 -1.3941 -7.5730 -3.6873 23 1 -2.3419 -7.0720 -3.4903 24 8 -0.8170 -7.0467 -4.8840 25 6 0.8644 -3.0005 -1.4007 26 1 -0.4850 0.8401 -0.0004 27 1 -0.3743 -1.7561 0.9531 28 1 2.1849 -4.2532 0.9638 29 1 3.1384 -3.5659 -0.4199 30 1 0.1588 -5.4184 -3.2880 31 1 -1.1299 -5.3485 -2.0623 32 1 -2.0057 -7.4006 -1.0365 33 1 -0.3779 -7.7342 -0.3981 34 1 -0.3512 -9.9037 -1.5979 35 1 -1.7399 -9.8043 -0.4885 36 1 -2.4256 -10.7081 -2.6931 37 1 -3.2013 -9.1377 -2.3772 38 1 -0.6872 -9.5757 -4.0519 39 1 -2.3151 -9.2423 -4.6905 40 1 -1.3688 -7.1604 -5.6699 41 1 1.5155 -2.6261 -2.1906 42 1 -0.1936 -2.8759 -1.6313 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567757647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:43 Heat of formation + Delta-G solvation = -121.693369 kcal Electronic energy + Delta-G solvation = -23127.138581 eV Core-core repulsion = 19686.475688 eV Total energy + Delta-G solvation = -3440.662892 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.90526 -38.96865 -37.25292 -35.53485 -33.97308 -32.49104 -32.18418 -29.76635 -28.96261 -26.71419 -25.07804 -24.84099 -22.67871 -21.54394 -20.05659 -19.75458 -18.13182 -17.37231 -17.29245 -16.27235 -15.48659 -15.21865 -15.08791 -14.90392 -14.45559 -14.14374 -13.92771 -13.68452 -13.21277 -12.99936 -12.84459 -12.51739 -12.29218 -12.02801 -11.89447 -11.55287 -11.43906 -11.35736 -11.08401 -10.98029 -10.91699 -10.67215 -10.46753 -10.36057 -10.24646 -10.18201 -9.84512 -9.51424 -9.05290 -8.75972 -8.35659 -7.77320 -6.39888 -4.49906 3.13692 3.23145 3.26839 3.30331 3.63822 4.12493 4.18737 4.59516 4.64890 4.82842 4.89274 5.09087 5.10682 5.24776 5.31584 5.36396 5.46111 5.53081 5.62177 5.69380 5.77875 5.91924 5.94470 5.97793 6.02428 6.14159 6.19385 6.24139 6.27263 6.44164 6.53508 6.54788 6.59258 6.70208 6.72163 7.13337 7.58854 7.63588 7.81887 8.53232 8.60894 8.86007 9.21548 9.49979 10.66783 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.032299 B = 0.003659 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.685788 B = 7650.138090 C = 7929.591078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.071 3.929 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.073 0.927 9 C 0.239 3.761 10 O -0.571 6.571 11 C 0.106 3.894 12 N -0.636 5.636 13 C 0.535 3.465 14 O -0.565 6.565 15 C -0.126 4.126 16 C -0.058 4.058 17 H 0.082 0.918 18 C -0.120 4.120 19 C -0.119 4.119 20 C -0.117 4.117 21 C -0.149 4.149 22 C 0.108 3.892 23 H 0.055 0.945 24 O -0.565 6.565 25 C 0.072 3.928 26 H 0.273 0.727 27 H 0.393 0.607 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.373 0.627 41 H 0.080 0.920 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.481 -11.881 -7.854 15.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.131 4.131 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.571 4.571 8 H 0.091 0.909 9 C 0.197 3.803 10 O -0.384 6.384 11 C -0.017 4.017 12 N -0.369 5.369 13 C 0.326 3.674 14 O -0.446 6.446 15 C -0.166 4.166 16 C -0.077 4.077 17 H 0.100 0.900 18 C -0.158 4.158 19 C -0.157 4.157 20 C -0.155 4.155 21 C -0.187 4.187 22 C 0.049 3.951 23 H 0.073 0.927 24 O -0.370 6.370 25 C -0.051 4.051 26 H 0.083 0.917 27 H 0.250 0.750 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.220 0.780 41 H 0.098 0.902 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.715 -12.877 -7.053 15.421 hybrid contribution -0.409 1.328 -0.754 1.580 sum -5.124 -11.549 -7.807 14.852 Atomic orbital electron populations 1.69273 1.06209 1.28063 1.50397 1.25080 0.95023 0.99934 0.93053 0.86261 0.80092 0.82206 0.77857 1.19412 1.20664 1.20625 1.21493 0.93972 0.89812 1.51786 0.90898 1.19594 0.85371 0.91056 0.84255 1.86043 1.44985 1.48296 1.59081 1.23293 0.93817 0.92283 0.92259 1.49766 1.42417 1.04907 1.39790 1.20098 0.83074 0.80802 0.83445 1.90580 1.58199 1.40516 1.55272 1.21550 0.98927 0.97411 0.98686 1.20836 0.99133 0.94659 0.93067 0.89962 1.21728 1.01118 0.94683 0.98239 1.21545 0.99441 0.96949 0.97727 1.21506 0.98907 1.00428 0.94661 1.22251 1.01552 0.96773 0.98094 1.21902 0.95822 0.92153 0.85223 0.92733 1.86558 1.49396 1.82876 1.18163 1.24240 1.00334 0.78030 1.02540 0.91661 0.75022 0.91683 0.89872 0.88631 0.89590 0.92464 0.88932 0.91859 0.91961 0.92023 0.91974 0.91151 0.92025 0.78013 0.90173 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.72 11.01 55.43 0.61 -22.11 16 2 C 0.07 1.77 5.40 -17.82 -0.10 1.68 16 3 Si 0.91 19.38 29.54 -169.99 -5.02 14.36 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.53 -13.38 8.69 -34.44 -0.30 -13.68 16 8 H 0.07 1.79 7.81 -52.48 -0.41 1.38 16 9 C 0.24 5.80 1.59 -91.12 -0.14 5.65 16 10 O -0.57 -14.85 13.55 -35.23 -0.48 -15.33 16 11 C 0.11 2.37 8.02 -8.51 -0.07 2.30 16 12 N -0.64 -13.78 3.69 -185.04 -0.68 -14.46 16 13 C 0.54 11.03 7.79 -10.98 -0.09 10.95 16 14 O -0.56 -12.79 14.74 5.56 0.08 -12.71 16 15 C -0.13 -2.08 4.93 -27.88 -0.14 -2.21 16 16 C -0.06 -0.84 1.58 -90.63 -0.14 -0.98 16 17 H 0.08 1.34 7.95 -51.93 -0.41 0.92 16 18 C -0.12 -1.69 4.94 -26.73 -0.13 -1.82 16 19 C -0.12 -1.35 5.92 -26.73 -0.16 -1.51 16 20 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 21 C -0.15 -1.43 5.55 -26.70 -0.15 -1.57 16 22 C 0.11 1.24 2.90 -26.70 -0.08 1.16 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 O -0.56 -6.56 12.56 -35.23 -0.44 -7.01 16 25 C 0.07 1.57 7.85 -8.37 -0.07 1.50 16 26 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 27 H 0.39 10.29 6.33 45.56 0.29 10.58 16 28 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.71 8.10 -51.93 -0.42 1.29 16 30 H 0.10 1.56 7.54 -51.93 -0.39 1.16 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.59 5.95 -51.93 -0.31 1.28 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.37 2.62 9.08 45.56 0.41 3.03 16 41 H 0.08 1.67 8.10 -51.93 -0.42 1.24 16 42 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 336.23 15.07 5.07 5.07 Total: -1.00 -28.77 336.23 -8.03 -36.80 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -5.45 Total: 15.21 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -1.71 Total: 0.19 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: -0.07 Total: -36.57 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -0.84 Total: -35.04 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.77 -8.03 -36.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567757647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.896 kcal (2) G-P(sol) polarization free energy of solvation -28.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds