Wall clock time and date at job start Tue Mar 31 2020 06:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47309 * 2 1 4 4 C 1.52998 * 109.47149 * 119.99606 * 2 1 3 5 5 C 1.50706 * 109.47348 * 300.00078 * 4 2 1 6 6 H 1.08005 * 119.99758 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00102 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00217 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47483 * 269.99808 * 9 7 5 11 11 H 1.48499 * 109.47134 * 30.00322 * 9 7 5 12 12 H 1.48507 * 109.46904 * 150.00145 * 9 7 5 13 13 C 1.52996 * 109.47350 * 239.99526 * 2 1 3 14 14 N 1.46506 * 109.46955 * 59.99944 * 13 2 1 15 15 C 1.34778 * 119.99945 * 179.97438 * 14 13 2 16 16 O 1.21274 * 119.99823 * 0.02562 * 15 14 13 17 17 C 1.50696 * 119.99830 * 180.02562 * 15 14 13 18 18 H 1.08995 * 112.85269 * 51.69234 * 17 15 14 19 19 C 1.53781 * 113.61228 * 280.49673 * 17 15 14 20 20 C 1.53791 * 87.07948 * 220.01839 * 19 17 15 21 21 C 1.53782 * 87.07841 * 25.43432 * 20 19 17 22 22 H 1.09004 * 113.61644 * 89.11706 * 21 20 19 23 23 C 1.50701 * 113.61095 * 220.02094 * 21 20 19 24 24 O 1.20828 * 120.00328 * 97.49612 * 23 21 20 25 25 O 1.34229 * 119.99856 * 277.49676 * 23 21 20 26 26 H 1.09002 * 109.47144 * 300.00262 * 1 2 3 27 27 H 1.08995 * 109.46867 * 60.00304 * 1 2 3 28 28 H 1.08994 * 109.47054 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47381 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.46541 * 300.00101 * 3 2 1 31 31 H 1.09001 * 109.47046 * 59.99028 * 3 2 1 32 32 H 1.09001 * 109.47671 * 180.02562 * 4 2 1 33 33 H 1.09006 * 109.47297 * 60.00006 * 4 2 1 34 34 H 0.97001 * 119.99646 * 359.97438 * 8 7 5 35 35 H 1.09000 * 109.47441 * 179.97438 * 13 2 1 36 36 H 1.09002 * 109.47087 * 300.00409 * 13 2 1 37 37 H 0.96998 * 119.99895 * 0.02562 * 14 13 2 38 38 H 1.09001 * 113.61691 * 334.56627 * 19 17 15 39 39 H 1.08999 * 113.61697 * 105.47558 * 19 17 15 40 40 H 1.09001 * 113.61123 * 139.98092 * 20 19 17 41 41 H 1.08995 * 113.61535 * 270.79756 * 20 19 17 42 42 H 0.96701 * 117.00495 * 180.02562 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.5377 -0.0107 2.4798 6 1 0.9171 0.8677 2.3806 7 6 1.8703 -0.4820 3.7320 8 7 2.6264 -1.5512 3.8528 9 14 1.2482 0.3991 5.2571 10 1 2.2271 1.4401 5.6614 11 1 -0.0595 1.0376 4.9612 12 1 1.0824 -0.5799 6.3614 13 6 2.0401 -0.7213 -1.2491 14 7 1.5517 -0.0308 -2.4454 15 6 1.8778 -0.4910 -3.6695 16 8 2.5750 -1.4770 -3.7806 17 6 1.3759 0.2196 -4.8999 18 1 1.5848 1.2893 -4.8858 19 6 -0.0815 -0.1187 -5.2553 20 6 0.3636 -0.1341 -6.7273 21 6 1.7742 -0.4704 -6.2153 22 1 1.9569 -1.5398 -6.1095 23 6 2.8728 0.2415 -6.9618 24 8 3.3511 1.2554 -6.5108 25 8 3.3202 -0.2507 -8.1277 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1301 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 -0.7208 1.2496 33 1 1.6767 -1.7489 1.2494 34 1 2.9498 -2.0085 3.0608 35 1 3.1301 -0.7209 -1.2494 36 1 1.6767 -1.7490 -1.2491 37 1 0.9943 0.7581 -2.3564 38 1 -0.4062 -1.0919 -4.8870 39 1 -0.7850 0.6801 -5.0203 40 1 -0.0907 -0.9337 -7.3124 41 1 0.2947 0.8385 -7.2145 42 1 4.0263 0.2404 -8.5696 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573470076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:26 Heat of formation + Delta-G solvation = -136.347220 kcal Electronic energy + Delta-G solvation = -22600.992755 eV Core-core repulsion = 19159.694424 eV Total energy + Delta-G solvation = -3441.298331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23849 -39.72342 -38.03878 -36.88313 -36.26732 -33.79049 -32.18181 -28.11520 -27.53170 -26.66688 -26.59663 -25.50362 -22.86569 -22.51043 -20.83182 -19.64543 -18.78740 -18.31308 -17.60645 -16.88144 -16.51093 -15.87533 -15.65100 -15.08117 -14.48514 -14.39678 -13.98260 -13.75024 -13.60159 -13.12885 -12.93347 -12.82805 -12.56828 -12.20997 -11.95141 -11.82335 -11.75877 -11.42041 -11.20823 -11.17560 -11.02755 -10.98622 -10.65742 -10.64579 -10.27124 -10.12117 -10.00839 -9.77801 -9.41233 -8.82228 -8.47797 -8.31905 -6.33584 -4.02777 1.92023 2.66370 2.71913 3.37181 3.43245 3.46083 3.61361 3.89213 4.07582 4.26709 4.49284 4.54636 4.93545 5.08160 5.20775 5.27944 5.34029 5.40098 5.41708 5.46216 5.51080 5.53895 5.63965 5.90748 6.08081 6.11842 6.17827 6.21647 6.29542 6.47029 6.54734 6.67318 6.94194 6.97937 7.01711 7.33608 7.48493 7.61960 7.65713 8.21070 8.32490 8.47288 8.89695 9.68338 11.06411 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.038086 B = 0.003086 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.999547 B = 9071.005170 C = 9229.286235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.066 4.066 3 C -0.127 4.127 4 C 0.023 3.977 5 C -0.591 4.591 6 H 0.054 0.946 7 C 0.013 3.987 8 N -0.915 5.915 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.126 3.874 14 N -0.716 5.716 15 C 0.518 3.482 16 O -0.546 6.546 17 C -0.120 4.120 18 H 0.127 0.873 19 C -0.123 4.123 20 C -0.120 4.120 21 C -0.088 4.088 22 H 0.139 0.861 23 C 0.491 3.509 24 O -0.514 6.514 25 O -0.514 6.514 26 H 0.068 0.932 27 H 0.030 0.970 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.008 0.992 33 H 0.009 0.991 34 H 0.269 0.731 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.400 0.600 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.843 4.838 -22.368 23.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.066 4.066 3 C -0.184 4.184 4 C -0.015 4.015 5 C -0.630 4.630 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.551 5.551 9 Si 0.897 3.103 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.367 5.367 15 C 0.304 3.696 16 O -0.424 6.424 17 C -0.141 4.141 18 H 0.145 0.855 19 C -0.160 4.160 20 C -0.157 4.157 21 C -0.108 4.108 22 H 0.157 0.843 23 C 0.333 3.667 24 O -0.401 6.401 25 O -0.326 6.326 26 H 0.087 0.913 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.027 0.973 33 H 0.027 0.973 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.235 0.765 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -5.502 4.153 -20.439 21.570 hybrid contribution 0.432 0.752 -1.869 2.060 sum -5.070 4.905 -22.307 23.396 Atomic orbital electron populations 1.21746 0.95018 1.01115 1.00421 1.20762 0.95639 0.95863 0.94383 1.21758 1.00487 0.95739 1.00418 1.19217 0.95666 0.95156 0.91433 1.22000 1.34874 1.14348 0.91748 0.92816 1.25789 0.95327 0.96548 1.01392 1.70743 1.32533 1.18297 1.33552 0.83545 0.75749 0.75456 0.75506 1.21580 1.21544 1.21115 1.21649 0.98896 0.95997 0.83104 1.46142 1.52964 1.31866 1.05709 1.20231 0.80270 0.84581 0.84545 1.90690 1.38152 1.26735 1.86830 1.22805 0.97676 1.02184 0.91428 0.85500 1.22834 0.94103 1.03657 0.95435 1.22843 0.92380 1.03194 0.97296 1.22422 0.91735 1.02661 0.93956 0.84345 1.23290 0.82010 0.82737 0.78624 1.90725 1.57011 1.25156 1.67243 1.84545 1.54746 1.57388 1.35928 0.91275 0.95072 0.93478 0.93466 0.95071 0.91260 0.97329 0.97310 0.92041 0.91909 0.91845 0.76494 0.88733 0.89429 0.89340 0.89175 0.73270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.19 8.05 37.16 0.30 -1.89 16 2 C -0.07 -1.25 0.54 -154.51 -0.08 -1.34 16 3 C -0.13 -2.26 8.05 37.16 0.30 -1.96 16 4 C 0.02 0.55 3.35 -27.88 -0.09 0.46 16 5 C -0.59 -15.84 7.65 -34.44 -0.26 -16.10 16 6 H 0.05 1.40 5.68 -52.48 -0.30 1.10 16 7 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 8 N -0.91 -27.77 13.65 55.43 0.76 -27.01 16 9 Si 1.07 24.92 29.90 -169.99 -5.08 19.84 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.13 2.23 4.56 -4.04 -0.02 2.22 16 14 N -0.72 -10.27 4.96 -60.29 -0.30 -10.57 16 15 C 0.52 7.56 7.35 -10.99 -0.08 7.48 16 16 O -0.55 -10.06 15.92 5.56 0.09 -9.97 16 17 C -0.12 -1.26 3.47 -90.96 -0.32 -1.57 16 18 H 0.13 1.30 7.44 -51.93 -0.39 0.91 16 19 C -0.12 -0.90 7.63 -25.91 -0.20 -1.10 16 20 C -0.12 -0.79 7.63 -25.91 -0.20 -0.99 16 21 C -0.09 -0.87 3.57 -90.96 -0.32 -1.20 16 22 H 0.14 1.47 7.47 -51.93 -0.39 1.08 16 23 C 0.49 5.37 7.85 36.01 0.28 5.66 16 24 O -0.51 -7.17 16.66 -18.75 -0.31 -7.48 16 25 O -0.51 -4.26 13.42 -39.26 -0.53 -4.79 16 26 H 0.07 1.31 6.62 -51.93 -0.34 0.97 16 27 H 0.03 0.43 6.86 -51.93 -0.36 0.07 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 31 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 32 H 0.01 0.22 8.01 -51.93 -0.42 -0.19 16 33 H 0.01 0.23 8.01 -51.93 -0.42 -0.19 16 34 H 0.27 8.17 7.22 -40.82 -0.29 7.88 16 35 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.40 4.83 6.16 -40.82 -0.25 4.58 16 38 H 0.09 0.73 8.09 -51.93 -0.42 0.31 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.41 1.67 9.10 45.56 0.41 2.08 16 LS Contribution 342.10 15.07 5.16 5.16 Total: -1.00 -34.34 342.10 -6.62 -40.96 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.61 Total: 3.92 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -0.79 Total: -10.06 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.46 Total: -37.58 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: -0.75 Total: -22.24 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -5.08 Total: 19.84 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.34 -6.62 -40.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573470076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.382 kcal (2) G-P(sol) polarization free energy of solvation -34.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds