Wall clock time and date at job start Tue Mar 31 2020 05:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 115.55333 * 2 1 4 4 C 1.53002 * 117.49940 * 145.67369 * 2 1 3 5 5 C 1.50699 * 117.49563 * 359.97074 * 4 2 1 6 6 O 1.21294 * 119.99839 * 114.56750 * 5 4 2 7 7 N 1.34775 * 120.00417 * 294.56466 * 5 4 2 8 8 C 1.37097 * 119.99948 * 3.11993 * 7 5 4 9 9 H 1.07999 * 120.00267 * 123.90878 * 8 7 5 10 10 C 1.38953 * 119.99885 * 303.91229 * 8 7 5 11 11 N 1.31413 * 119.99898 * 353.80354 * 10 8 7 12 12 Si 1.86802 * 120.00124 * 173.80557 * 10 8 7 13 13 H 1.48499 * 109.46756 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47307 * 119.99621 * 12 10 8 15 15 H 1.48498 * 109.47255 * 239.99848 * 12 10 8 16 16 C 1.46498 * 120.00009 * 183.11562 * 7 5 4 17 17 C 1.53004 * 109.46954 * 90.00381 * 16 7 5 18 18 C 1.50701 * 109.46744 * 179.97438 * 17 16 7 19 19 O 1.20825 * 120.00556 * 0.02562 * 18 17 16 20 20 O 1.34231 * 119.99515 * 179.97438 * 18 17 16 21 21 C 1.52999 * 60.03221 * 107.47419 * 4 2 1 22 22 C 1.53002 * 117.49431 * 107.50224 * 21 4 2 23 23 C 1.52997 * 117.49685 * 252.51829 * 21 4 2 24 24 H 1.09004 * 109.46576 * 330.58199 * 1 2 3 25 25 H 1.09006 * 109.47314 * 90.57600 * 1 2 3 26 26 H 1.09002 * 109.47291 * 210.58067 * 1 2 3 27 27 H 1.09000 * 109.47751 * 154.27702 * 3 2 1 28 28 H 1.09000 * 109.47258 * 274.27911 * 3 2 1 29 29 H 1.09010 * 109.47013 * 34.27764 * 3 2 1 30 30 H 1.09002 * 117.49686 * 214.97892 * 4 2 1 31 31 H 0.96999 * 120.00025 * 185.00748 * 11 10 8 32 32 H 1.09006 * 109.46765 * 210.00056 * 16 7 5 33 33 H 1.09001 * 109.47229 * 330.00245 * 16 7 5 34 34 H 1.08992 * 109.47003 * 299.99464 * 17 16 7 35 35 H 1.09001 * 109.47263 * 59.99885 * 17 16 7 36 36 H 0.96703 * 116.99430 * 180.02562 * 20 18 17 37 37 H 1.09001 * 109.47100 * 116.36846 * 22 21 4 38 38 H 1.09003 * 109.47069 * 236.36320 * 22 21 4 39 39 H 1.08998 * 109.47470 * 356.36687 * 22 21 4 40 40 H 1.08996 * 109.47589 * 8.61824 * 23 21 4 41 41 H 1.09001 * 109.46608 * 128.61387 * 23 21 4 42 42 H 1.09001 * 109.47437 * 248.60699 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2365 -1.1208 0.7653 5 6 1.3720 -2.1398 1.4619 6 8 1.3814 -3.2958 1.0946 7 7 0.5884 -1.7668 2.4931 8 6 0.5290 -0.4492 2.8673 9 1 -0.4229 0.0595 2.9034 10 6 1.6937 0.2316 3.2001 11 7 2.8349 -0.4159 3.2746 12 14 1.6374 2.0673 3.5417 13 1 0.2431 2.5559 3.3922 14 1 2.1080 2.3279 4.9258 15 1 2.5163 2.7773 2.5781 16 6 -0.1999 -2.7693 3.2140 17 6 0.6245 -3.3274 4.3758 18 6 -0.1867 -4.3582 5.1178 19 8 -1.3089 -4.6199 4.7544 20 8 0.3379 -4.9863 6.1818 21 6 2.2366 -1.1221 -0.7647 22 6 3.5494 -0.7781 -1.4712 23 6 1.3588 -2.1577 -1.4703 24 1 -0.3632 0.8952 0.5048 25 1 -0.3634 -0.0103 -1.0277 26 1 -0.3634 -0.8847 0.5228 27 1 3.1819 1.3089 0.4460 28 1 2.2775 1.7412 -1.0248 29 1 1.5805 2.0744 0.5788 30 1 3.1715 -0.8748 1.2685 31 1 3.6341 0.0431 3.5771 32 1 -1.1079 -2.3073 3.6018 33 1 -0.4659 -3.5794 2.5350 34 1 1.5324 -3.7894 3.9880 35 1 0.8905 -2.5173 5.0548 36 1 -0.2204 -5.6397 6.6250 37 1 3.8912 -1.6408 -2.0430 38 1 3.3897 0.0640 -2.1447 39 1 4.3025 -0.5124 -0.7294 40 1 0.7293 -2.6610 -0.7364 41 1 0.7296 -1.6588 -2.2074 42 1 1.9919 -2.8909 -1.9698 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593825554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:21 Heat of formation + Delta-G solvation = -106.714217 kcal Electronic energy + Delta-G solvation = -24405.356931 eV Core-core repulsion = 20965.343584 eV Total energy + Delta-G solvation = -3440.013347 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.94996 -39.55791 -37.00934 -35.81021 -34.77989 -32.35089 -30.52320 -30.11035 -27.92854 -27.19254 -25.61003 -25.14308 -23.89958 -21.31129 -19.99760 -19.01571 -17.77461 -17.03538 -16.50399 -15.96603 -15.63353 -15.26153 -14.78941 -14.52706 -14.26522 -13.86879 -13.30276 -12.86751 -12.73232 -12.59004 -12.47740 -12.05294 -11.96242 -11.84113 -11.65404 -11.38881 -11.24856 -11.24276 -11.20542 -11.08337 -10.85996 -10.77713 -10.66114 -10.45474 -10.23319 -10.13749 -10.02727 -9.12954 -8.69047 -8.48273 -8.10445 -7.32064 -6.41177 -4.27292 2.61742 3.08123 3.19235 3.19693 3.40803 4.03944 4.17037 4.45640 4.87998 4.92854 5.51480 5.53697 5.62646 5.69212 5.78084 5.82044 5.90733 6.00186 6.15812 6.20026 6.29802 6.32398 6.38650 6.48432 6.53111 6.59308 6.60442 6.66746 6.68396 6.74839 6.77329 6.87738 6.89075 7.01440 7.04669 7.29070 7.37415 7.43583 7.94821 8.25774 8.58668 8.93361 9.56106 9.98533 10.65426 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.007390 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.701633 B = 3787.894810 C = 4839.708648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.094 4.094 3 C -0.105 4.105 4 C -0.101 4.101 5 C 0.551 3.449 6 O -0.603 6.603 7 N -0.455 5.455 8 C -0.326 4.326 9 H 0.081 0.919 10 C 0.062 3.938 11 N -0.866 5.866 12 Si 0.899 3.101 13 H -0.268 1.268 14 H -0.285 1.285 15 H -0.273 1.273 16 C 0.130 3.870 17 C -0.118 4.118 18 C 0.483 3.517 19 O -0.526 6.526 20 O -0.522 6.522 21 C -0.134 4.134 22 C -0.105 4.105 23 C -0.114 4.114 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.142 0.858 31 H 0.269 0.731 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.110 0.890 36 H 0.400 0.600 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.040 0.960 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.664 0.924 -1.290 1.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.094 4.094 3 C -0.162 4.162 4 C -0.122 4.122 5 C 0.342 3.658 6 O -0.488 6.488 7 N -0.176 5.176 8 C -0.455 4.455 9 H 0.098 0.902 10 C -0.144 4.144 11 N -0.502 5.502 12 Si 0.726 3.274 13 H -0.192 1.192 14 H -0.211 1.211 15 H -0.199 1.199 16 C 0.006 3.994 17 C -0.157 4.157 18 C 0.327 3.673 19 O -0.414 6.414 20 O -0.333 6.333 21 C -0.134 4.134 22 C -0.162 4.162 23 C -0.171 4.171 24 H 0.073 0.927 25 H 0.055 0.945 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.159 0.841 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.258 0.742 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.534 0.637 -1.779 1.963 hybrid contribution -0.084 0.647 0.894 1.106 sum -0.617 1.283 -0.885 1.676 Atomic orbital electron populations 1.21269 0.92549 1.02831 0.99109 1.21342 0.94483 0.90301 1.03299 1.21298 1.00002 0.94941 0.99912 1.22668 1.01985 0.97399 0.90113 1.19593 0.79843 0.87310 0.79027 1.90491 1.69581 1.20959 1.67814 1.43318 1.41324 1.06459 1.26466 1.19219 0.94113 0.84717 1.47410 0.90182 1.25434 0.95376 0.99168 0.94391 1.69816 0.99953 1.36981 1.43467 0.86357 0.78968 0.84060 0.77998 1.19182 1.21088 1.19860 1.21110 0.93447 0.92933 0.91935 1.21817 0.99866 0.95634 0.98364 1.24035 0.85850 0.80171 0.77281 1.90666 1.20826 1.63751 1.66194 1.84626 1.50919 1.54148 1.43591 1.21789 0.97543 0.99888 0.94219 1.21250 0.95235 1.00313 0.99435 1.21401 0.98963 0.96760 0.99954 0.92674 0.94492 0.91557 0.92896 0.93500 0.92868 0.84118 0.92006 0.91238 0.91203 0.87892 0.87147 0.74235 0.92989 0.93096 0.92834 0.90455 0.94060 0.93401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.91 7.39 37.16 0.27 -1.64 16 2 C -0.09 -1.83 1.92 -154.47 -0.30 -2.12 16 3 C -0.10 -1.86 8.40 37.16 0.31 -1.55 16 4 C -0.10 -2.24 3.19 -91.77 -0.29 -2.54 16 5 C 0.55 13.33 4.55 -10.99 -0.05 13.28 16 6 O -0.60 -15.80 14.40 5.55 0.08 -15.72 16 7 N -0.46 -10.57 1.89 -114.81 -0.22 -10.79 16 8 C -0.33 -7.53 6.43 -14.93 -0.10 -7.63 16 9 H 0.08 1.85 7.84 -52.49 -0.41 1.43 16 10 C 0.06 1.43 4.11 -17.47 -0.07 1.36 16 11 N -0.87 -20.76 10.39 55.50 0.58 -20.18 16 12 Si 0.90 18.39 27.71 -169.99 -4.71 13.68 16 13 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 14 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.27 -5.48 6.98 56.52 0.39 -5.09 16 16 C 0.13 2.78 4.69 -4.04 -0.02 2.76 16 17 C -0.12 -2.30 6.14 -27.88 -0.17 -2.47 16 18 C 0.48 8.50 8.33 36.01 0.30 8.80 16 19 O -0.53 -10.33 16.74 -18.75 -0.31 -10.65 16 20 O -0.52 -7.43 13.42 -39.26 -0.53 -7.96 16 21 C -0.13 -2.57 2.70 -154.47 -0.42 -2.99 16 22 C -0.11 -1.72 8.97 37.16 0.33 -1.39 16 23 C -0.11 -2.15 8.38 37.16 0.31 -1.84 16 24 H 0.05 1.01 7.85 -51.93 -0.41 0.61 16 25 H 0.04 0.63 7.78 -51.93 -0.40 0.22 16 26 H 0.07 1.40 5.42 -51.93 -0.28 1.12 16 27 H 0.05 0.97 7.90 -51.93 -0.41 0.56 16 28 H 0.05 0.72 7.84 -51.93 -0.41 0.32 16 29 H 0.05 0.95 6.28 -51.92 -0.33 0.62 16 30 H 0.14 3.37 5.95 -51.93 -0.31 3.06 16 31 H 0.27 6.22 8.32 -40.82 -0.34 5.88 16 32 H 0.07 1.42 8.00 -51.93 -0.42 1.01 16 33 H 0.07 1.57 7.34 -51.93 -0.38 1.19 16 34 H 0.10 2.15 8.14 -51.93 -0.42 1.72 16 35 H 0.11 2.19 8.14 -51.93 -0.42 1.76 16 36 H 0.40 3.67 9.10 45.56 0.41 4.09 16 37 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 38 H 0.05 0.74 7.78 -51.93 -0.40 0.34 16 39 H 0.05 0.88 7.87 -51.93 -0.41 0.47 16 40 H 0.08 1.68 5.24 -51.93 -0.27 1.40 16 41 H 0.04 0.69 7.84 -51.93 -0.41 0.29 16 42 H 0.05 0.85 7.88 -51.93 -0.41 0.44 16 LS Contribution 331.29 15.07 4.99 4.99 Total: -1.00 -27.70 331.29 -5.64 -33.34 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -5.63 Total: 11.25 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 0.12 Total: 2.03 kcal Atomic # 7 Polarization: -31.33 SS G_CDS: 0.36 Total: -30.97 kcal Atomic # 8 Polarization: -33.56 SS G_CDS: -0.76 Total: -34.33 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -4.71 Total: 13.68 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.70 -5.64 -33.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593825554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.378 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds