Wall clock time and date at job start Tue Mar 31 2020 05:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 115.55333 * 2 1 4 4 C 1.53002 * 117.49940 * 145.67369 * 2 1 3 5 5 C 1.50699 * 117.49563 * 359.97074 * 4 2 1 6 6 O 1.21294 * 119.99839 * 114.56750 * 5 4 2 7 7 N 1.34775 * 120.00417 * 294.56466 * 5 4 2 8 8 C 1.37097 * 119.99948 * 3.11993 * 7 5 4 9 9 H 1.07999 * 120.00267 * 123.90878 * 8 7 5 10 10 C 1.38953 * 119.99885 * 303.91229 * 8 7 5 11 11 N 1.31413 * 119.99898 * 353.80354 * 10 8 7 12 12 Si 1.86802 * 120.00124 * 173.80557 * 10 8 7 13 13 H 1.48499 * 109.46756 * 359.97438 * 12 10 8 14 14 H 1.48493 * 109.47307 * 119.99621 * 12 10 8 15 15 H 1.48498 * 109.47255 * 239.99848 * 12 10 8 16 16 C 1.46498 * 120.00009 * 183.11562 * 7 5 4 17 17 C 1.53004 * 109.46954 * 90.00381 * 16 7 5 18 18 C 1.50701 * 109.46744 * 179.97438 * 17 16 7 19 19 O 1.20825 * 120.00556 * 0.02562 * 18 17 16 20 20 O 1.34231 * 119.99515 * 179.97438 * 18 17 16 21 21 C 1.52999 * 60.03221 * 107.47419 * 4 2 1 22 22 C 1.53002 * 117.49431 * 107.50224 * 21 4 2 23 23 C 1.52997 * 117.49685 * 252.51829 * 21 4 2 24 24 H 1.09004 * 109.46576 * 330.58199 * 1 2 3 25 25 H 1.09006 * 109.47314 * 90.57600 * 1 2 3 26 26 H 1.09002 * 109.47291 * 210.58067 * 1 2 3 27 27 H 1.09000 * 109.47751 * 154.27702 * 3 2 1 28 28 H 1.09000 * 109.47258 * 274.27911 * 3 2 1 29 29 H 1.09010 * 109.47013 * 34.27764 * 3 2 1 30 30 H 1.09002 * 117.49686 * 214.97892 * 4 2 1 31 31 H 0.96999 * 120.00025 * 185.00748 * 11 10 8 32 32 H 1.09006 * 109.46765 * 210.00056 * 16 7 5 33 33 H 1.09001 * 109.47229 * 330.00245 * 16 7 5 34 34 H 1.08992 * 109.47003 * 299.99464 * 17 16 7 35 35 H 1.09001 * 109.47263 * 59.99885 * 17 16 7 36 36 H 0.96703 * 116.99430 * 180.02562 * 20 18 17 37 37 H 1.09001 * 109.47100 * 116.36846 * 22 21 4 38 38 H 1.09003 * 109.47069 * 236.36320 * 22 21 4 39 39 H 1.08998 * 109.47470 * 356.36687 * 22 21 4 40 40 H 1.08996 * 109.47589 * 8.61824 * 23 21 4 41 41 H 1.09001 * 109.46608 * 128.61387 * 23 21 4 42 42 H 1.09001 * 109.47437 * 248.60699 * 23 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1899 1.3803 0.0000 4 6 2.2365 -1.1208 0.7653 5 6 1.3720 -2.1398 1.4619 6 8 1.3814 -3.2958 1.0946 7 7 0.5884 -1.7668 2.4931 8 6 0.5290 -0.4492 2.8673 9 1 -0.4229 0.0595 2.9034 10 6 1.6937 0.2316 3.2001 11 7 2.8349 -0.4159 3.2746 12 14 1.6374 2.0673 3.5417 13 1 0.2431 2.5559 3.3922 14 1 2.1080 2.3279 4.9258 15 1 2.5163 2.7773 2.5781 16 6 -0.1999 -2.7693 3.2140 17 6 0.6245 -3.3274 4.3758 18 6 -0.1867 -4.3582 5.1178 19 8 -1.3089 -4.6199 4.7544 20 8 0.3379 -4.9863 6.1818 21 6 2.2366 -1.1221 -0.7647 22 6 3.5494 -0.7781 -1.4712 23 6 1.3588 -2.1577 -1.4703 24 1 -0.3632 0.8952 0.5048 25 1 -0.3634 -0.0103 -1.0277 26 1 -0.3634 -0.8847 0.5228 27 1 3.1819 1.3089 0.4460 28 1 2.2775 1.7412 -1.0248 29 1 1.5805 2.0744 0.5788 30 1 3.1715 -0.8748 1.2685 31 1 3.6341 0.0431 3.5771 32 1 -1.1079 -2.3073 3.6018 33 1 -0.4659 -3.5794 2.5350 34 1 1.5324 -3.7894 3.9880 35 1 0.8905 -2.5173 5.0548 36 1 -0.2204 -5.6397 6.6250 37 1 3.8912 -1.6408 -2.0430 38 1 3.3897 0.0640 -2.1447 39 1 4.3025 -0.5124 -0.7294 40 1 0.7293 -2.6610 -0.7364 41 1 0.7296 -1.6588 -2.2074 42 1 1.9919 -2.8909 -1.9698 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593825554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:20 Heat of formation + Delta-G solvation = -122.442892 kcal Electronic energy + Delta-G solvation = -24406.038978 eV Core-core repulsion = 20965.343584 eV Total energy + Delta-G solvation = -3440.695394 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.51817 -41.09689 -38.66693 -37.18755 -36.60603 -34.09815 -32.11821 -31.69434 -29.35821 -28.78748 -27.07970 -26.86039 -25.55922 -22.87391 -21.59250 -20.78136 -19.18225 -18.53771 -18.16815 -17.56153 -17.18730 -16.94495 -16.48329 -16.20903 -15.86948 -15.37982 -14.88153 -14.42298 -14.33865 -14.13074 -13.97207 -13.61716 -13.43858 -13.32699 -13.18572 -12.97124 -12.81986 -12.75491 -12.70344 -12.57349 -12.52635 -12.35029 -12.28618 -12.10576 -11.89411 -11.66092 -11.52150 -10.88780 -10.34547 -10.06603 -9.82313 -9.14239 -8.19117 -6.10882 1.16790 1.45516 1.52528 1.59139 1.96938 2.35447 2.40830 2.88733 3.14460 3.25727 3.98135 4.01156 4.07992 4.11388 4.14801 4.36930 4.42725 4.49768 4.66973 4.75582 4.80566 4.83280 4.94978 4.96259 5.03629 5.10753 5.12477 5.17728 5.23204 5.25815 5.26258 5.30434 5.43749 5.55038 5.56536 5.60100 5.70987 5.79385 6.15038 6.75755 6.99550 7.13405 7.73294 8.17202 8.87662 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015999 B = 0.007390 C = 0.005784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.701633 B = 3787.894810 C = 4839.708648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.085 4.085 3 C -0.101 4.101 4 C -0.128 4.128 5 C 0.541 3.459 6 O -0.635 6.635 7 N -0.458 5.458 8 C -0.334 4.334 9 H 0.079 0.921 10 C 0.042 3.958 11 N -0.886 5.886 12 Si 0.944 3.056 13 H -0.262 1.262 14 H -0.290 1.290 15 H -0.264 1.264 16 C 0.130 3.870 17 C -0.108 4.108 18 C 0.498 3.502 19 O -0.547 6.547 20 O -0.510 6.510 21 C -0.127 4.127 22 C -0.101 4.101 23 C -0.110 4.110 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.039 0.961 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.122 0.878 31 H 0.270 0.730 32 H 0.075 0.925 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.108 0.892 36 H 0.427 0.573 37 H 0.062 0.938 38 H 0.075 0.925 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.064 0.936 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 2.267 -1.845 2.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.086 4.086 3 C -0.158 4.158 4 C -0.148 4.148 5 C 0.334 3.666 6 O -0.524 6.524 7 N -0.178 5.178 8 C -0.462 4.462 9 H 0.097 0.903 10 C -0.163 4.163 11 N -0.523 5.523 12 Si 0.769 3.231 13 H -0.186 1.186 14 H -0.217 1.217 15 H -0.189 1.189 16 C 0.006 3.994 17 C -0.147 4.147 18 C 0.342 3.658 19 O -0.438 6.438 20 O -0.324 6.324 21 C -0.128 4.128 22 C -0.158 4.158 23 C -0.167 4.167 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.139 0.861 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.126 0.874 36 H 0.289 0.711 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.063 0.937 41 H 0.082 0.918 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.477 1.971 -2.302 3.068 hybrid contribution -0.119 0.146 1.131 1.147 sum -0.595 2.117 -1.171 2.491 Atomic orbital electron populations 1.21220 0.92418 1.01683 1.00097 1.21458 0.94617 0.90802 1.01703 1.21292 0.99157 0.93684 1.01703 1.22484 1.01319 0.99126 0.91890 1.20022 0.80136 0.87373 0.79064 1.90448 1.70851 1.22352 1.68708 1.43450 1.41016 1.06938 1.26370 1.19291 0.94274 0.84802 1.47784 0.90318 1.25862 0.94747 1.01785 0.93856 1.69918 1.00403 1.38226 1.43714 0.85680 0.79261 0.80586 0.77592 1.18599 1.21681 1.18857 1.21080 0.93888 0.92305 0.92152 1.21509 0.99064 0.96197 0.97882 1.23381 0.84950 0.79775 0.77699 1.90667 1.21595 1.64456 1.67059 1.84538 1.51104 1.54479 1.42260 1.22001 0.98850 0.99451 0.92472 1.21254 0.93353 1.01739 0.99495 1.21339 0.98917 0.96907 0.99541 0.92263 0.92381 0.94212 0.93761 0.90554 0.93011 0.86098 0.92007 0.90630 0.92921 0.89577 0.87405 0.71136 0.91948 0.90619 0.93363 0.93666 0.91765 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.58 7.39 71.98 0.53 -3.05 16 2 C -0.09 -3.20 1.92 -52.16 -0.10 -3.30 16 3 C -0.10 -3.35 8.40 71.98 0.60 -2.74 16 4 C -0.13 -5.69 3.19 -11.54 -0.04 -5.72 16 5 C 0.54 26.95 4.55 87.66 0.40 27.35 16 6 O -0.64 -34.63 14.40 -3.07 -0.04 -34.68 16 7 N -0.46 -21.83 1.89 -635.53 -1.20 -23.03 16 8 C -0.33 -15.48 6.43 84.04 0.54 -14.94 16 9 H 0.08 3.63 7.84 -2.91 -0.02 3.61 16 10 C 0.04 1.91 4.11 84.93 0.35 2.26 16 11 N -0.89 -42.79 10.39 21.66 0.23 -42.57 16 12 Si 0.94 36.68 27.71 68.60 1.90 38.58 16 13 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 14 H -0.29 -11.54 7.11 99.48 0.71 -10.83 16 15 H -0.26 -9.82 6.98 99.48 0.69 -9.13 16 16 C 0.13 5.72 4.69 86.38 0.41 6.12 16 17 C -0.11 -4.28 6.14 29.85 0.18 -4.09 16 18 C 0.50 17.29 8.33 71.24 0.59 17.88 16 19 O -0.55 -21.31 16.74 21.97 0.37 -20.95 16 20 O -0.51 -13.64 13.42 -51.43 -0.69 -14.33 16 21 C -0.13 -4.73 2.70 -52.16 -0.14 -4.87 16 22 C -0.10 -3.07 8.97 71.98 0.65 -2.43 16 23 C -0.11 -4.06 8.38 71.98 0.60 -3.46 16 24 H 0.06 2.09 7.85 -2.38 -0.02 2.07 16 25 H 0.06 1.86 7.78 -2.38 -0.02 1.84 16 26 H 0.04 1.68 5.42 -2.39 -0.01 1.66 16 27 H 0.04 1.53 7.90 -2.39 -0.02 1.51 16 28 H 0.08 2.06 7.84 -2.39 -0.02 2.04 16 29 H 0.05 1.71 6.28 -2.38 -0.01 1.69 16 30 H 0.12 5.89 5.95 -2.39 -0.01 5.88 16 31 H 0.27 12.52 8.32 -92.71 -0.77 11.75 16 32 H 0.08 3.17 8.00 -2.38 -0.02 3.15 16 33 H 0.05 2.48 7.34 -2.39 -0.02 2.46 16 34 H 0.09 3.72 8.14 -2.39 -0.02 3.70 16 35 H 0.11 4.33 8.14 -2.39 -0.02 4.31 16 36 H 0.43 6.74 9.10 -74.06 -0.67 6.07 16 37 H 0.06 1.75 7.85 -2.39 -0.02 1.73 16 38 H 0.07 1.92 7.78 -2.39 -0.02 1.90 16 39 H 0.05 1.51 7.87 -2.39 -0.02 1.49 16 40 H 0.04 1.98 5.24 -2.39 -0.01 1.96 16 41 H 0.06 2.03 7.84 -2.39 -0.02 2.01 16 42 H 0.05 1.89 7.88 -2.39 -0.02 1.88 16 Total: -1.00 -59.89 331.29 5.48 -54.41 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: 0.34 Total: 33.54 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 4.58 Total: 9.01 kcal Atomic # 7 Polarization: -64.62 SS G_CDS: -0.98 Total: -65.60 kcal Atomic # 8 Polarization: -69.59 SS G_CDS: -0.37 Total: -69.95 kcal Atomic # 14 Polarization: 36.68 SS G_CDS: 1.90 Total: 38.58 kcal Total: -59.89 5.48 -54.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593825554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.032 kcal (2) G-P(sol) polarization free energy of solvation -59.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds