Wall clock time and date at job start Tue Mar 31 2020 05:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52999 * 110.01773 * 2 1 4 4 C 1.54268 * 110.03123 * 121.39034 * 2 1 3 5 5 C 1.54885 * 104.19598 * 95.67449 * 4 2 1 6 6 C 1.54893 * 102.75029 * 37.94362 * 5 4 2 7 7 H 1.09001 * 110.48779 * 80.73161 * 6 5 4 8 8 C 1.50693 * 110.48745 * 203.24913 * 6 5 4 9 9 O 1.21294 * 120.00542 * 89.17895 * 8 6 5 10 10 N 1.34780 * 120.00056 * 269.17493 * 8 6 5 11 11 C 1.37107 * 119.99741 * 5.01797 * 10 8 6 12 12 H 1.08003 * 119.99680 * 323.65070 * 11 10 8 13 13 C 1.38947 * 120.00048 * 143.65853 * 11 10 8 14 14 N 1.31404 * 120.00052 * 339.77095 * 13 11 10 15 15 Si 1.86803 * 119.99884 * 159.76679 * 13 11 10 16 16 H 1.48498 * 109.46856 * 0.02562 * 15 13 11 17 17 H 1.48503 * 109.46859 * 120.00139 * 15 13 11 18 18 H 1.48494 * 109.47185 * 240.00071 * 15 13 11 19 19 C 1.46495 * 120.00241 * 185.01184 * 10 8 6 20 20 C 1.53006 * 109.47093 * 90.00318 * 19 10 8 21 21 C 1.50703 * 109.47073 * 179.97438 * 20 19 10 22 22 O 1.20816 * 119.99995 * 359.97438 * 21 20 19 23 23 O 1.34225 * 119.99439 * 180.02562 * 21 20 19 24 24 C 1.54220 * 110.00703 * 238.58616 * 2 1 3 25 25 H 1.09006 * 109.47575 * 300.06569 * 1 2 3 26 26 H 1.09002 * 109.47063 * 60.06500 * 1 2 3 27 27 H 1.08997 * 109.47488 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47221 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47310 * 299.93232 * 3 2 1 30 30 H 1.08998 * 109.47400 * 59.93482 * 3 2 1 31 31 H 1.08996 * 110.48644 * 336.99471 * 4 2 1 32 32 H 1.09008 * 110.48773 * 214.35116 * 4 2 1 33 33 H 1.09003 * 110.76068 * 279.62691 * 5 4 2 34 34 H 1.09000 * 110.75863 * 156.25379 * 5 4 2 35 35 H 0.97001 * 120.00005 * 185.16261 * 14 13 11 36 36 H 1.09002 * 109.47208 * 210.00202 * 19 10 8 37 37 H 1.08998 * 109.47285 * 330.00283 * 19 10 8 38 38 H 1.09002 * 109.46999 * 300.00012 * 20 19 10 39 39 H 1.08998 * 109.47084 * 59.99842 * 20 19 10 40 40 H 0.96702 * 116.99886 * 180.02562 * 23 21 20 41 41 H 1.08991 * 110.14614 * 121.44356 * 24 2 1 42 42 H 1.09003 * 110.08475 * 359.90554 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0537 1.4376 0.0000 4 6 2.0584 -0.7549 1.2372 5 6 2.3279 -2.1898 0.7202 6 6 2.8874 -1.9410 -0.7026 7 1 3.9439 -1.6769 -0.6563 8 6 2.6866 -3.1578 -1.5685 9 8 1.6641 -3.2848 -2.2086 10 7 3.6432 -4.1051 -1.6320 11 6 4.7526 -4.0137 -0.8315 12 1 5.1847 -3.0477 -0.6158 13 6 5.3210 -5.1639 -0.2980 14 7 4.6132 -6.2677 -0.2122 15 14 7.0916 -5.1411 0.2971 16 1 7.6652 -3.7868 0.0921 17 1 7.1326 -5.4821 1.7418 18 1 7.8841 -6.1361 -0.4690 19 6 3.4976 -5.2325 -2.5560 20 6 4.1252 -4.8715 -3.9040 21 6 3.9759 -6.0315 -4.8544 22 8 3.4247 -7.0432 -4.4908 23 8 4.4564 -5.9409 -6.1044 24 6 2.0576 -0.7553 -1.2367 25 1 -0.3634 0.5149 0.8894 26 1 -0.3633 0.5128 -0.8906 27 1 -0.3634 -1.0276 0.0005 28 1 3.1436 1.4272 0.0005 29 1 1.6963 1.9545 -0.8906 30 1 1.6943 1.9552 0.8894 31 1 1.3061 -0.7686 2.0258 32 1 2.9811 -0.2994 1.5968 33 1 1.4030 -2.7649 0.6764 34 1 3.0675 -2.6925 1.3435 35 1 4.9840 -7.0486 0.2278 36 1 4.0004 -6.1075 -2.1439 37 1 2.4394 -5.4537 -2.6955 38 1 3.6224 -3.9966 -4.3161 39 1 5.1833 -4.6504 -3.7645 40 1 4.3366 -6.7104 -6.6776 41 1 2.6876 -0.0990 -1.8369 42 1 1.2237 -1.1226 -1.8349 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593871109.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:06 Heat of formation + Delta-G solvation = -150.459922 kcal Electronic energy + Delta-G solvation = -23446.567062 eV Core-core repulsion = 20004.656758 eV Total energy + Delta-G solvation = -3441.910304 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.84868 -39.33799 -37.55555 -35.78211 -34.89152 -32.09110 -31.80838 -30.34182 -28.37377 -27.08196 -25.26538 -24.85990 -23.34198 -21.17031 -20.04409 -18.96629 -18.32729 -17.74044 -16.76505 -16.32900 -15.88903 -15.50581 -14.77659 -14.58167 -14.23643 -13.93651 -13.55523 -13.39085 -13.05797 -12.77970 -12.67225 -12.54170 -12.43877 -11.86973 -11.62829 -11.32841 -11.22589 -11.19628 -11.13578 -10.92689 -10.77695 -10.44048 -10.36480 -10.28865 -10.18658 -10.11561 -10.07800 -9.98953 -9.74343 -9.17704 -8.39908 -7.56132 -6.38575 -4.10143 2.67934 3.07367 3.19206 3.21705 3.41933 3.85935 4.10032 4.72520 4.89558 5.01387 5.04537 5.16809 5.60353 5.61099 5.76218 5.77490 5.79845 5.81894 5.87088 5.98210 6.02433 6.06038 6.15826 6.19416 6.27506 6.34118 6.36197 6.39471 6.52179 6.55977 6.62494 6.82582 6.83129 6.86009 6.91936 7.02449 7.32618 7.51046 7.89840 8.30248 8.34279 9.04647 9.47819 9.90286 10.62982 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014034 B = 0.006009 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.670233 B = 4658.697401 C = 6026.384930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 C -0.136 4.136 4 C -0.114 4.114 5 C -0.098 4.098 6 C -0.092 4.092 7 H 0.088 0.912 8 C 0.481 3.519 9 O -0.602 6.602 10 N -0.440 5.440 11 C -0.344 4.344 12 H 0.093 0.907 13 C 0.044 3.956 14 N -0.857 5.857 15 Si 0.911 3.089 16 H -0.267 1.267 17 H -0.281 1.281 18 H -0.280 1.280 19 C 0.121 3.879 20 C -0.123 4.123 21 C 0.482 3.518 22 O -0.513 6.513 23 O -0.525 6.525 24 C -0.106 4.106 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.271 0.729 36 H 0.119 0.881 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.401 0.599 41 H 0.056 0.944 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 8.381 -1.569 8.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.070 4.070 3 C -0.194 4.194 4 C -0.151 4.151 5 C -0.137 4.137 6 C -0.113 4.113 7 H 0.106 0.894 8 C 0.271 3.729 9 O -0.488 6.488 10 N -0.158 5.158 11 C -0.471 4.471 12 H 0.111 0.889 13 C -0.162 4.162 14 N -0.493 5.493 15 Si 0.738 3.262 16 H -0.191 1.191 17 H -0.207 1.207 18 H -0.205 1.205 19 C -0.003 4.003 20 C -0.162 4.162 21 C 0.325 3.675 22 O -0.401 6.401 23 O -0.337 6.337 24 C -0.144 4.144 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.137 0.863 37 H 0.083 0.917 38 H 0.113 0.887 39 H 0.122 0.878 40 H 0.258 0.742 41 H 0.075 0.925 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.562 8.139 -1.505 8.296 hybrid contribution 0.980 -0.677 -0.051 1.193 sum 0.418 7.462 -1.556 7.634 Atomic orbital electron populations 1.21875 0.94770 1.01900 1.00690 1.21228 0.95301 0.94754 0.95740 1.21902 1.00773 0.95732 1.00953 1.22493 1.00224 0.95942 0.96452 1.22245 1.00978 0.95772 0.94658 1.21802 1.00672 0.93426 0.95407 0.89366 1.20436 0.82724 0.86223 0.83560 1.90505 1.28336 1.80393 1.49569 1.43401 1.18241 1.20852 1.33259 1.19443 1.04609 0.94466 1.28608 0.88918 1.25379 0.99332 0.95577 0.95941 1.69821 1.36322 1.03597 1.39557 0.86117 0.82955 0.78707 0.78430 1.19106 1.20662 1.20543 1.21230 1.00865 0.93029 0.85207 1.21861 1.05127 0.94434 0.94816 1.23799 0.73794 0.89390 0.80545 1.90701 1.40234 1.32363 1.76793 1.84592 1.75929 1.47779 1.25378 1.22325 1.00158 0.95343 0.96574 0.93373 0.93092 0.92303 0.92685 0.93094 0.93205 0.92127 0.91770 0.91790 0.90649 0.91838 0.86320 0.91671 0.88735 0.87772 0.74170 0.92519 0.89979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 8.15 37.15 0.30 -1.50 16 2 C -0.07 -0.99 0.94 -153.21 -0.14 -1.13 16 3 C -0.14 -1.61 8.17 37.16 0.30 -1.31 16 4 C -0.11 -1.64 5.90 -25.07 -0.15 -1.78 16 5 C -0.10 -1.78 6.32 -24.74 -0.16 -1.93 16 6 C -0.09 -1.78 2.54 -90.11 -0.23 -2.00 16 7 H 0.09 1.68 6.41 -51.93 -0.33 1.34 16 8 C 0.48 11.32 6.77 -10.99 -0.07 11.25 16 9 O -0.60 -15.56 15.18 5.55 0.08 -15.47 16 10 N -0.44 -10.66 2.53 -114.81 -0.29 -10.95 16 11 C -0.34 -8.25 8.71 -14.93 -0.13 -8.38 16 12 H 0.09 2.11 6.36 -52.48 -0.33 1.78 16 13 C 0.04 1.07 5.00 -17.47 -0.09 0.99 16 14 N -0.86 -22.42 11.29 55.50 0.63 -21.79 16 15 Si 0.91 18.83 29.60 -169.99 -5.03 13.80 16 16 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 17 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 18 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 19 C 0.12 2.90 4.33 -4.04 -0.02 2.88 16 20 C -0.12 -2.44 6.14 -27.88 -0.17 -2.61 16 21 C 0.48 8.98 8.33 36.01 0.30 9.28 16 22 O -0.51 -11.13 16.74 -18.74 -0.31 -11.44 16 23 O -0.53 -7.59 13.42 -39.25 -0.53 -8.12 16 24 C -0.11 -1.79 5.65 -25.43 -0.14 -1.94 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.80 7.84 -51.93 -0.41 0.39 16 32 H 0.06 0.86 7.85 -51.92 -0.41 0.45 16 33 H 0.06 1.25 8.05 -51.93 -0.42 0.83 16 34 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.27 6.74 8.32 -40.82 -0.34 6.40 16 36 H 0.12 3.11 5.34 -51.93 -0.28 2.84 16 37 H 0.06 1.69 7.32 -51.93 -0.38 1.31 16 38 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 39 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 40 H 0.40 3.85 9.10 45.56 0.41 4.26 16 41 H 0.06 0.88 7.69 -51.93 -0.40 0.49 16 42 H 0.08 1.56 6.35 -51.93 -0.33 1.23 16 LS Contribution 340.92 15.07 5.14 5.14 Total: -1.00 -29.82 340.92 -6.52 -36.34 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -5.81 Total: 10.68 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -0.40 Total: 1.82 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: 0.34 Total: -32.74 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.76 Total: -35.04 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.03 Total: 13.80 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.82 -6.52 -36.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593871109.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.118 kcal (2) G-P(sol) polarization free energy of solvation -29.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds