Wall clock time and date at job start Tue Mar 31 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 110.05770 * 2 1 4 4 C 1.54466 * 109.85434 * 238.58548 * 2 1 3 5 5 C 1.54886 * 104.10303 * 264.10273 * 4 2 1 6 6 C 1.54895 * 102.91651 * 322.30029 * 5 4 2 7 7 C 1.53881 * 110.03368 * 121.42003 * 2 1 3 8 8 H 1.08997 * 110.07401 * 359.97438 * 7 2 1 9 9 C 1.50700 * 110.03011 * 238.56661 * 7 2 1 10 10 O 1.21289 * 119.99841 * 277.08681 * 9 7 2 11 11 N 1.34772 * 119.99682 * 97.09655 * 9 7 2 12 12 C 1.37099 * 120.00288 * 359.97438 * 11 9 7 13 13 H 1.08002 * 119.99785 * 322.91147 * 12 11 9 14 14 C 1.38948 * 119.99787 * 142.91309 * 12 11 9 15 15 N 1.31408 * 120.00261 * 338.90953 * 14 12 11 16 16 Si 1.86803 * 119.99816 * 158.91399 * 14 12 11 17 17 H 1.48504 * 109.47294 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47360 * 119.99661 * 16 14 12 19 19 H 1.48501 * 109.47113 * 239.99719 * 16 14 12 20 20 C 1.46508 * 119.99737 * 179.97438 * 11 9 7 21 21 C 1.52999 * 109.47327 * 84.56941 * 20 11 9 22 22 C 1.50699 * 109.47083 * 179.97438 * 21 20 11 23 23 O 1.20818 * 120.00012 * 0.02562 * 22 21 20 24 24 O 1.34228 * 119.99575 * 179.97438 * 22 21 20 25 25 H 1.09010 * 109.47028 * 298.57679 * 1 2 3 26 26 H 1.08998 * 109.47680 * 58.57619 * 1 2 3 27 27 H 1.09002 * 109.47503 * 178.58193 * 1 2 3 28 28 H 1.08998 * 109.47516 * 183.78578 * 3 2 1 29 29 H 1.08993 * 109.47551 * 303.79610 * 3 2 1 30 30 H 1.09002 * 109.46982 * 63.79549 * 3 2 1 31 31 H 1.09007 * 110.40203 * 145.52156 * 4 2 1 32 32 H 1.09003 * 110.66142 * 22.81726 * 4 2 1 33 33 H 1.09005 * 110.75642 * 203.89749 * 5 4 2 34 34 H 1.08996 * 110.75558 * 80.71162 * 5 4 2 35 35 H 1.08995 * 110.48559 * 156.52931 * 6 5 4 36 36 H 1.08994 * 110.48573 * 279.03991 * 6 5 4 37 37 H 0.97007 * 119.99779 * 180.02562 * 15 14 12 38 38 H 1.09006 * 109.46618 * 204.56930 * 20 11 9 39 39 H 1.08996 * 109.46724 * 324.56900 * 20 11 9 40 40 H 1.08999 * 109.46843 * 300.00132 * 21 20 11 41 41 H 1.08997 * 109.46947 * 59.99564 * 21 20 11 42 42 H 0.96701 * 116.99533 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0547 1.4372 0.0000 4 6 2.0546 -0.7573 -1.2399 5 6 2.3279 -2.1902 -0.7193 6 6 2.8875 -1.9408 0.7034 7 6 2.0571 -0.7537 1.2337 8 1 1.2235 -1.1193 1.8332 9 6 2.9276 0.1563 2.0615 10 8 4.0936 0.3135 1.7665 11 7 2.4106 0.7953 3.1295 12 6 1.0926 0.6178 3.4627 13 1 0.3480 0.5192 2.6866 14 6 0.7148 0.5649 4.7988 15 7 1.6026 0.2693 5.7214 16 14 -1.0552 0.9137 5.2835 17 1 -1.8505 1.2193 4.0672 18 1 -1.6264 -0.2770 5.9626 19 1 -1.0957 2.0767 6.2060 20 6 3.2570 1.6795 3.9346 21 6 3.2966 3.0689 3.2952 22 6 4.1667 3.9786 4.1237 23 8 4.7008 3.5586 5.1227 24 8 4.3492 5.2551 3.7510 25 1 -0.3633 0.4916 0.9026 26 1 -0.3634 0.5358 -0.8769 27 1 -0.3634 -1.0273 -0.0254 28 1 3.1425 1.4269 -0.0679 29 1 1.6424 1.9746 -0.8539 30 1 1.7530 1.9341 0.9221 31 1 2.9758 -0.3009 -1.6023 32 1 1.3010 -0.7747 -2.0273 33 1 3.0674 -2.6931 -1.3425 34 1 1.4047 -2.7679 -0.6755 35 1 2.7401 -2.8198 1.3307 36 1 3.9445 -1.6791 0.6571 37 1 1.3388 0.2320 6.6542 38 1 2.8486 1.7548 4.9424 39 1 4.2669 1.2721 3.9813 40 1 3.7049 2.9935 2.2874 41 1 2.2866 3.4762 3.2484 42 1 4.9154 5.8002 4.3144 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593898127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:19 Heat of formation + Delta-G solvation = -147.152638 kcal Electronic energy + Delta-G solvation = -24213.460927 eV Core-core repulsion = 20771.694039 eV Total energy + Delta-G solvation = -3441.766889 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.97053 -39.58385 -37.13043 -35.76487 -34.84394 -31.99337 -31.71340 -30.71158 -28.44144 -26.86438 -25.17948 -24.53374 -23.48284 -20.99164 -20.04677 -19.35492 -18.31325 -17.70872 -16.45232 -16.19978 -15.84508 -15.45483 -15.06520 -14.63857 -14.40828 -13.79224 -13.71089 -13.06414 -12.96231 -12.83391 -12.57194 -12.51748 -12.17923 -11.85335 -11.46784 -11.24364 -11.14921 -11.14275 -11.08623 -10.79201 -10.73840 -10.59940 -10.42046 -10.17924 -10.16114 -10.09203 -10.04472 -9.99709 -9.66152 -9.11595 -8.35619 -7.56291 -6.40930 -4.10860 2.67313 3.07532 3.19609 3.21928 3.42499 3.87869 4.09878 4.78162 4.90893 5.00330 5.12998 5.29753 5.60959 5.70061 5.74246 5.80199 5.82890 5.91664 5.99712 6.08844 6.10264 6.16857 6.23064 6.27734 6.34630 6.39839 6.41163 6.45491 6.55836 6.67618 6.76174 6.81044 6.83029 6.87952 6.94938 7.06114 7.31981 7.46989 7.89578 8.29915 8.35251 9.05524 9.50134 9.92838 10.61424 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.012761 B = 0.007702 C = 0.005757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.611100 B = 3634.605343 C = 4862.709056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 C -0.149 4.149 4 C -0.112 4.112 5 C -0.121 4.121 6 C -0.112 4.112 7 C -0.093 4.093 8 H 0.098 0.902 9 C 0.490 3.510 10 O -0.604 6.604 11 N -0.440 5.440 12 C -0.345 4.345 13 H 0.095 0.905 14 C 0.044 3.956 15 N -0.852 5.852 16 Si 0.907 3.093 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.280 1.280 20 C 0.130 3.870 21 C -0.126 4.126 22 C 0.482 3.518 23 O -0.514 6.514 24 O -0.525 6.525 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.270 0.730 38 H 0.111 0.889 39 H 0.062 0.938 40 H 0.098 0.902 41 H 0.102 0.898 42 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.078 2.523 -8.192 8.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.048 4.048 3 C -0.206 4.206 4 C -0.150 4.150 5 C -0.159 4.159 6 C -0.150 4.150 7 C -0.114 4.114 8 H 0.116 0.884 9 C 0.279 3.721 10 O -0.490 6.490 11 N -0.158 5.158 12 C -0.472 4.472 13 H 0.113 0.887 14 C -0.163 4.163 15 N -0.487 5.487 16 Si 0.733 3.267 17 H -0.190 1.190 18 H -0.207 1.207 19 H -0.205 1.205 20 C 0.006 3.994 21 C -0.165 4.165 22 C 0.325 3.675 23 O -0.402 6.402 24 O -0.337 6.337 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.129 0.871 39 H 0.080 0.920 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -1.615 2.212 -8.056 8.509 hybrid contribution -0.614 0.594 0.899 1.240 sum -2.229 2.806 -7.157 8.004 Atomic orbital electron populations 1.21964 0.94597 1.01320 1.01711 1.20964 0.94971 0.95297 0.93609 1.22080 1.01749 0.95301 1.01444 1.22504 1.00381 0.95448 0.96662 1.22445 1.00129 0.96609 0.96702 1.22315 1.00837 0.96830 0.95000 1.21825 0.98951 0.95159 0.95457 0.88424 1.20258 0.87075 0.81305 0.83419 1.90499 1.17992 1.67508 1.72975 1.43422 1.10069 1.37526 1.24784 1.19500 0.82816 1.52822 0.92086 0.88726 1.25402 0.98992 0.95513 0.96358 1.69969 1.35021 1.41883 1.01841 0.86193 0.83082 0.78357 0.79037 1.19004 1.20686 1.20544 1.21093 0.95919 0.84986 0.97403 1.21898 0.99005 0.95620 0.99945 1.23819 0.79254 0.80364 0.84108 1.90702 1.47274 1.75555 1.26624 1.84594 1.67308 1.24526 1.57228 0.91681 0.93400 0.92933 0.91682 0.93772 0.91716 0.91738 0.92231 0.92226 0.92012 0.92262 0.90292 0.91965 0.87074 0.91962 0.88354 0.87943 0.74183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.11 37.16 0.30 -1.75 16 2 C -0.05 -0.79 0.94 -153.28 -0.14 -0.93 16 3 C -0.15 -2.55 7.24 37.16 0.27 -2.28 16 4 C -0.11 -1.62 5.92 -24.97 -0.15 -1.77 16 5 C -0.12 -1.72 6.90 -24.74 -0.17 -1.89 16 6 C -0.11 -1.97 6.32 -25.07 -0.16 -2.13 16 7 C -0.09 -1.80 2.26 -90.65 -0.20 -2.00 16 8 H 0.10 1.99 6.10 -51.93 -0.32 1.67 16 9 C 0.49 11.24 4.45 -10.99 -0.05 11.19 16 10 O -0.60 -15.12 14.48 5.55 0.08 -15.04 16 11 N -0.44 -10.45 2.23 -114.81 -0.26 -10.71 16 12 C -0.34 -8.18 8.16 -14.93 -0.12 -8.30 16 13 H 0.10 2.13 5.26 -52.49 -0.28 1.85 16 14 C 0.04 1.08 4.91 -17.47 -0.09 0.99 16 15 N -0.85 -22.26 11.49 55.50 0.64 -21.62 16 16 Si 0.91 18.79 29.60 -169.99 -5.03 13.76 16 17 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 18 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 19 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 20 C 0.13 3.08 4.18 -4.04 -0.02 3.07 16 21 C -0.13 -2.46 6.10 -27.88 -0.17 -2.63 16 22 C 0.48 8.91 8.33 36.01 0.30 9.21 16 23 O -0.51 -11.07 16.74 -18.74 -0.31 -11.38 16 24 O -0.52 -7.55 13.42 -39.25 -0.53 -8.08 16 25 H 0.06 1.05 6.35 -51.92 -0.33 0.72 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.23 6.85 -51.93 -0.36 0.87 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 1.21 7.15 -51.93 -0.37 0.84 16 31 H 0.06 0.95 7.81 -51.93 -0.41 0.55 16 32 H 0.06 0.75 7.84 -51.93 -0.41 0.34 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.54 6.95 -51.93 -0.36 1.18 16 37 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.11 2.87 5.51 -51.93 -0.29 2.58 16 39 H 0.06 1.60 7.55 -51.93 -0.39 1.21 16 40 H 0.10 1.90 8.14 -51.93 -0.42 1.48 16 41 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 42 H 0.40 3.83 9.10 45.56 0.41 4.24 16 LS Contribution 333.02 15.07 5.02 5.02 Total: -1.00 -29.35 333.02 -6.39 -35.75 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -5.60 Total: 11.54 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -0.40 Total: 0.77 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.38 Total: -32.33 kcal Atomic # 8 Polarization: -33.74 SS G_CDS: -0.76 Total: -34.50 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.35 -6.39 -35.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593898127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.403 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds