Wall clock time and date at job start Tue Mar 31 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 110.05257 * 2 1 4 4 C 1.54376 * 110.04656 * 238.52588 * 2 1 3 5 5 C 1.54889 * 104.19434 * 217.09292 * 4 2 1 6 6 C 1.54889 * 102.75048 * 37.96808 * 5 4 2 7 7 C 1.53877 * 110.03001 * 121.41657 * 2 1 3 8 8 H 1.09002 * 110.02672 * 238.61790 * 7 2 1 9 9 C 1.50698 * 110.03490 * 359.97438 * 7 2 1 10 10 O 1.21286 * 120.00025 * 82.01528 * 9 7 2 11 11 N 1.34780 * 119.99999 * 262.01978 * 9 7 2 12 12 C 1.37096 * 119.99989 * 4.88469 * 11 9 7 13 13 H 1.08003 * 119.99924 * 43.79881 * 12 11 9 14 14 C 1.38942 * 120.00288 * 223.79218 * 12 11 9 15 15 N 1.31414 * 120.00562 * 208.63879 * 14 12 11 16 16 Si 1.86810 * 119.99801 * 28.63773 * 14 12 11 17 17 H 1.48503 * 109.46523 * 89.32465 * 16 14 12 18 18 H 1.48497 * 109.47056 * 209.32126 * 16 14 12 19 19 H 1.48494 * 109.47037 * 329.32682 * 16 14 12 20 20 C 1.46506 * 119.99763 * 184.88948 * 11 9 7 21 21 C 1.53006 * 109.46876 * 273.11234 * 20 11 9 22 22 C 1.50695 * 109.46759 * 180.02562 * 21 20 11 23 23 O 1.20829 * 120.00036 * 359.97438 * 22 21 20 24 24 O 1.34232 * 119.99690 * 180.02562 * 22 21 20 25 25 H 1.08993 * 109.47574 * 300.71244 * 1 2 3 26 26 H 1.08997 * 109.47287 * 60.71639 * 1 2 3 27 27 H 1.09009 * 109.47194 * 180.71368 * 1 2 3 28 28 H 1.09003 * 109.46936 * 181.41587 * 3 2 1 29 29 H 1.08997 * 109.47099 * 301.41000 * 3 2 1 30 30 H 1.08999 * 109.47315 * 61.41742 * 3 2 1 31 31 H 1.08991 * 110.46049 * 98.42493 * 4 2 1 32 32 H 1.08997 * 110.62117 * 335.83456 * 4 2 1 33 33 H 1.09000 * 110.75574 * 279.65506 * 5 4 2 34 34 H 1.08995 * 110.75614 * 156.28624 * 5 4 2 35 35 H 1.09004 * 110.48508 * 203.38101 * 6 5 4 36 36 H 1.09000 * 110.48458 * 80.74029 * 6 5 4 37 37 H 0.96994 * 120.00042 * 180.02562 * 15 14 12 38 38 H 1.08991 * 109.46957 * 153.11268 * 20 11 9 39 39 H 1.08992 * 109.47069 * 33.11467 * 20 11 9 40 40 H 1.09001 * 109.47175 * 60.00156 * 21 20 11 41 41 H 1.08996 * 109.47022 * 300.00177 * 21 20 11 42 42 H 0.96706 * 116.99439 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0546 1.4372 0.0000 4 6 2.0592 -0.7572 -1.2369 5 6 3.3146 -1.5015 -0.7182 6 6 2.8881 -1.9406 0.7046 7 6 2.0571 -0.7536 1.2338 8 1 2.6860 -0.0950 1.8329 9 6 0.9037 -1.2586 2.0619 10 8 0.3453 -2.2914 1.7578 11 7 0.4928 -0.5626 3.1404 12 6 1.0565 0.6538 3.4268 13 1 1.2264 1.3698 2.6362 14 6 1.4092 0.9657 4.7340 15 7 1.4075 2.2174 5.1343 16 14 1.8856 -0.3944 5.9226 17 1 3.3477 -0.6391 5.8343 18 1 1.5345 0.0125 7.3069 19 1 1.1536 -1.6377 5.5713 20 6 -0.5563 -1.1061 4.0067 21 6 -1.9278 -0.7056 3.4595 22 6 -3.0068 -1.2641 4.3510 23 8 -2.7094 -1.9159 5.3239 24 8 -4.2984 -1.0382 4.0636 25 1 -0.3634 0.5248 0.8834 26 1 -0.3634 0.5026 -0.8963 27 1 -0.3634 -1.0277 0.0128 28 1 3.1443 1.4262 -0.0254 29 1 1.6761 1.9621 -0.8770 30 1 1.7174 1.9471 0.9024 31 1 2.3303 -0.0558 -2.0258 32 1 1.3164 -1.4682 -1.5985 33 1 4.1716 -0.8294 -0.6743 34 1 3.5341 -2.3689 -1.3406 35 1 3.7643 -2.1028 1.3325 36 1 2.2783 -2.8429 0.6587 37 1 1.6541 2.4350 6.0468 38 1 -0.4371 -0.7087 5.0146 39 1 -0.4788 -2.1929 4.0332 40 1 -2.0470 -1.1029 2.4515 41 1 -2.0052 0.3813 3.4331 42 1 -4.9546 -1.4164 4.6650 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593898130.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:22 Heat of formation + Delta-G solvation = -142.499380 kcal Electronic energy + Delta-G solvation = -24250.078460 eV Core-core repulsion = 20808.513352 eV Total energy + Delta-G solvation = -3441.565109 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.12556 -39.70724 -37.29807 -35.89143 -34.97253 -32.31569 -31.75984 -30.92068 -28.56211 -26.82144 -25.04805 -24.76057 -23.70544 -21.08290 -20.23379 -19.46024 -18.23021 -17.83206 -16.54384 -16.34869 -16.14157 -15.55064 -15.11156 -14.84976 -14.37979 -13.97495 -13.70903 -13.14043 -13.02406 -12.98802 -12.69968 -12.49554 -12.33964 -12.02984 -11.90204 -11.32816 -11.27090 -11.18804 -10.99877 -10.83655 -10.81192 -10.63834 -10.37749 -10.24802 -10.18146 -10.11374 -10.02522 -9.89674 -9.71531 -9.15608 -8.50608 -7.76489 -6.58538 -4.17113 2.54135 3.11793 3.24044 3.28436 3.34379 3.71059 4.14030 4.46610 4.81984 4.97230 5.08213 5.25923 5.42872 5.60328 5.68958 5.73870 5.81882 5.83791 5.93543 6.01752 6.07651 6.14035 6.14647 6.19693 6.26754 6.33090 6.38997 6.42541 6.52346 6.54580 6.61410 6.64747 6.74113 6.78020 6.83459 6.90165 7.02309 7.32353 8.04613 8.17860 8.25908 8.94425 9.32464 9.67774 10.50956 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.014289 B = 0.007493 C = 0.006010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1959.015340 B = 3736.046841 C = 4657.565046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.045 4.045 3 C -0.139 4.139 4 C -0.113 4.113 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.093 4.093 8 H 0.102 0.898 9 C 0.498 3.502 10 O -0.596 6.596 11 N -0.464 5.464 12 C -0.357 4.357 13 H 0.107 0.893 14 C 0.080 3.920 15 N -0.844 5.844 16 Si 0.850 3.150 17 H -0.275 1.275 18 H -0.283 1.283 19 H -0.252 1.252 20 C 0.128 3.872 21 C -0.125 4.125 22 C 0.484 3.516 23 O -0.521 6.521 24 O -0.521 6.521 25 H 0.064 0.936 26 H 0.044 0.956 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.046 0.954 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.275 0.725 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.105 0.895 41 H 0.112 0.888 42 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.845 -2.343 -7.226 7.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.046 4.046 3 C -0.196 4.196 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.152 4.152 7 C -0.115 4.115 8 H 0.120 0.880 9 C 0.289 3.711 10 O -0.481 6.481 11 N -0.184 5.184 12 C -0.483 4.483 13 H 0.124 0.876 14 C -0.130 4.130 15 N -0.477 5.477 16 Si 0.675 3.325 17 H -0.201 1.201 18 H -0.208 1.208 19 H -0.176 1.176 20 C 0.004 3.996 21 C -0.164 4.164 22 C 0.327 3.673 23 O -0.409 6.409 24 O -0.332 6.332 25 H 0.083 0.917 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.090 0.910 40 H 0.123 0.877 41 H 0.130 0.870 42 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -1.719 -2.677 -7.189 7.862 hybrid contribution -0.132 -0.595 1.346 1.477 sum -1.851 -3.272 -5.844 6.948 Atomic orbital electron populations 1.22105 0.94689 1.02617 1.01387 1.20919 0.95548 0.94873 0.93244 1.21958 1.00398 0.95198 1.02011 1.22488 0.97203 0.98556 0.96794 1.22439 0.97585 0.99330 0.96489 1.22352 0.98902 0.98613 0.95334 1.21843 0.96295 0.97603 0.95714 0.87956 1.20420 0.84840 0.82994 0.82880 1.90513 1.59456 1.25847 1.72282 1.43702 1.31459 1.18988 1.24277 1.19003 1.43068 0.90877 0.95347 0.87610 1.25404 0.94542 0.95678 0.97356 1.69867 1.41058 1.18365 1.18428 0.87350 0.80165 0.84493 0.80517 1.20060 1.20847 1.17582 1.21417 0.84756 0.99095 0.94309 1.21834 0.91422 1.03803 0.99292 1.23801 0.82579 0.76552 0.84371 1.90692 1.83241 1.38040 1.28961 1.84593 1.17886 1.73585 1.57178 0.91715 0.93705 0.91553 0.93013 0.93499 0.91168 0.92185 0.91749 0.91864 0.92161 0.92217 0.90305 0.91436 0.90644 0.91046 0.87663 0.86957 0.73993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 7.21 37.16 0.27 -2.31 16 2 C -0.05 -0.74 0.94 -153.33 -0.14 -0.88 16 3 C -0.14 -2.13 8.15 37.15 0.30 -1.83 16 4 C -0.11 -1.60 5.90 -25.01 -0.15 -1.75 16 5 C -0.12 -1.66 6.91 -24.74 -0.17 -1.83 16 6 C -0.11 -1.91 6.32 -25.08 -0.16 -2.07 16 7 C -0.09 -1.76 2.29 -90.66 -0.21 -1.97 16 8 H 0.10 2.05 6.36 -51.93 -0.33 1.72 16 9 C 0.50 10.81 4.51 -10.98 -0.05 10.76 16 10 O -0.60 -13.93 14.33 5.55 0.08 -13.85 16 11 N -0.46 -10.45 1.87 -114.81 -0.21 -10.67 16 12 C -0.36 -8.54 8.18 -14.94 -0.12 -8.66 16 13 H 0.11 2.61 5.82 -52.48 -0.31 2.30 16 14 C 0.08 2.00 5.09 -17.47 -0.09 1.91 16 15 N -0.84 -22.07 13.96 55.50 0.77 -21.30 16 16 Si 0.85 19.81 26.53 -169.99 -4.51 15.30 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.25 -5.94 5.66 56.52 0.32 -5.62 16 20 C 0.13 2.81 2.82 -4.04 -0.01 2.80 16 21 C -0.12 -2.32 6.12 -27.88 -0.17 -2.49 16 22 C 0.48 8.46 8.33 36.00 0.30 8.76 16 23 O -0.52 -10.55 16.74 -18.75 -0.31 -10.87 16 24 O -0.52 -7.12 13.42 -39.26 -0.53 -7.65 16 25 H 0.06 1.21 7.49 -51.93 -0.39 0.83 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.23 6.57 -51.92 -0.34 0.89 16 28 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.23 6.23 -51.93 -0.32 0.90 16 31 H 0.06 0.75 7.84 -51.93 -0.41 0.34 16 32 H 0.06 0.93 7.86 -51.93 -0.41 0.52 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.44 6.96 -51.93 -0.36 1.08 16 37 H 0.28 6.83 8.31 -40.82 -0.34 6.49 16 38 H 0.08 1.74 4.84 -51.93 -0.25 1.49 16 39 H 0.07 1.64 7.55 -51.93 -0.39 1.25 16 40 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 41 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 42 H 0.40 3.56 9.10 45.56 0.41 3.97 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -28.72 329.56 -5.84 -34.56 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: -5.69 Total: 9.06 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -0.40 Total: 0.44 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.56 Total: -31.96 kcal Atomic # 8 Polarization: -31.61 SS G_CDS: -0.76 Total: -32.37 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.51 Total: 15.30 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -28.72 -5.84 -34.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593898130.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.938 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds