Wall clock time and date at job start Tue Mar 31 2020 05:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47125 * 2 1 4 4 C 1.34779 * 119.99872 * 299.99586 * 3 2 1 5 5 O 1.21286 * 120.00040 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99944 * 180.02562 * 4 3 2 7 7 C 1.52997 * 109.47084 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.47084 * 179.97438 * 7 6 4 9 9 H 1.07996 * 119.99751 * 359.97438 * 8 7 6 10 10 C 1.37880 * 119.99788 * 179.97438 * 8 7 6 11 11 N 1.31512 * 119.99711 * 180.02562 * 10 8 7 12 12 Si 1.86804 * 120.00219 * 359.97438 * 10 8 7 13 13 H 1.48503 * 109.46782 * 89.99712 * 12 10 8 14 14 H 1.48495 * 109.46891 * 210.00100 * 12 10 8 15 15 H 1.48497 * 109.47042 * 330.00072 * 12 10 8 16 16 C 1.52996 * 109.46969 * 239.99789 * 2 1 3 17 17 C 1.53002 * 109.46972 * 180.02562 * 16 2 1 18 18 C 1.52997 * 109.47415 * 59.99860 * 17 16 2 19 19 C 1.53006 * 109.47164 * 300.00027 * 18 17 16 20 20 C 1.52997 * 109.47092 * 119.99849 * 2 1 3 21 21 H 1.09000 * 109.47140 * 59.99774 * 20 2 1 22 22 C 1.50706 * 109.46909 * 300.00075 * 20 2 1 23 23 O 1.20825 * 120.00012 * 359.97438 * 22 20 2 24 24 O 1.34235 * 119.99895 * 180.02562 * 22 20 2 25 25 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47067 * 300.00298 * 1 2 3 27 27 H 1.09004 * 109.46930 * 60.00215 * 1 2 3 28 28 H 0.97000 * 120.00420 * 120.00342 * 3 2 1 29 29 H 1.09002 * 109.47152 * 300.00160 * 6 4 3 30 30 H 1.09001 * 109.46980 * 60.00059 * 6 4 3 31 31 H 1.09002 * 109.47045 * 299.99967 * 7 6 4 32 32 H 1.09001 * 109.47375 * 60.00042 * 7 6 4 33 33 H 0.97000 * 119.99684 * 180.02562 * 11 10 8 34 34 H 1.08992 * 109.47534 * 60.00418 * 16 2 1 35 35 H 1.08996 * 109.47134 * 299.99612 * 16 2 1 36 36 H 1.09000 * 109.46986 * 299.99742 * 17 16 2 37 37 H 1.09001 * 109.47601 * 180.02562 * 17 16 2 38 38 H 1.09001 * 109.46922 * 180.02562 * 18 17 16 39 39 H 1.09000 * 109.47140 * 59.99976 * 18 17 16 40 40 H 1.08993 * 109.46955 * 180.02562 * 19 18 17 41 41 H 1.09000 * 109.47050 * 300.00004 * 19 18 17 42 42 H 0.96692 * 117.00039 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.6928 2.2110 -1.0109 5 8 0.9952 1.8145 -1.9203 6 6 2.1956 3.6317 -1.0112 7 6 1.6851 4.3531 -2.2601 8 6 2.1874 5.7740 -2.2601 9 1 2.8082 6.1272 -1.4501 10 6 1.8542 6.6229 -3.2942 11 7 2.2930 7.8627 -3.2944 12 14 0.7809 6.0117 -4.6956 13 1 -0.6471 6.2534 -4.3671 14 1 1.1322 6.7390 -5.9416 15 1 1.0042 4.5568 -4.8919 16 6 2.0400 -0.7213 -1.2492 17 6 3.5700 -0.7218 -1.2489 18 6 4.0795 -1.4434 0.0004 19 6 3.5695 -0.7220 1.2496 20 6 2.0400 -0.7212 1.2492 21 1 1.6766 -1.7489 1.2493 22 6 1.5376 -0.0107 2.4797 23 8 0.8433 0.9719 2.3688 24 8 1.8623 -0.4690 3.6989 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 2.5761 1.6985 0.7274 29 1 1.8327 4.1458 -0.1212 30 1 3.2856 3.6313 -1.0114 31 1 2.0477 3.8392 -3.1503 32 1 0.5951 4.3535 -2.2594 33 1 2.0583 8.4600 -4.0218 34 1 1.6768 -0.2075 -2.1392 35 1 1.6767 -1.7489 -1.2491 36 1 3.9337 0.3057 -1.2487 37 1 3.9334 -1.2353 -2.1391 38 1 5.1695 -1.4433 0.0007 39 1 3.7158 -2.4709 0.0002 40 1 3.9329 -1.2358 2.1396 41 1 3.9332 0.3055 1.2498 42 1 1.5169 0.0202 4.4581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594053695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:06 Heat of formation + Delta-G solvation = -148.363790 kcal Electronic energy + Delta-G solvation = -23732.391492 eV Core-core repulsion = 20290.572084 eV Total energy + Delta-G solvation = -3441.819408 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.42864 -39.57236 -37.73637 -36.38103 -33.81108 -33.39698 -31.69552 -31.58581 -30.60161 -26.93909 -26.03371 -24.19626 -22.54795 -21.42151 -21.13744 -19.75217 -18.97197 -18.22655 -17.29945 -16.97977 -16.13081 -15.87933 -15.43525 -15.04324 -14.79334 -14.15812 -14.01699 -13.86290 -13.43286 -13.31389 -12.86595 -12.80464 -12.50323 -12.41123 -12.21833 -11.99437 -11.69824 -11.62528 -11.34953 -11.31786 -11.05713 -10.89614 -10.78615 -10.40402 -10.13887 -10.07421 -9.94987 -9.72167 -9.13703 -8.92764 -8.69009 -8.46325 -5.98963 -3.97115 1.94513 2.71827 3.25392 3.41100 3.47014 3.49840 3.58374 4.14263 4.38235 4.54216 4.54702 4.86363 4.91757 5.00018 5.10388 5.15684 5.28441 5.36794 5.38146 5.54460 5.62641 5.66652 5.75882 5.82299 5.88137 5.97650 6.07253 6.13903 6.18939 6.24195 6.26787 6.35920 6.57745 6.76984 6.84853 7.43084 7.50302 7.65181 7.82831 7.92567 8.55708 8.79498 9.04866 9.64423 11.14055 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023616 B = 0.004388 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.363593 B = 6379.657096 C = 6694.065888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.198 3.802 3 N -0.722 5.722 4 C 0.517 3.483 5 O -0.538 6.538 6 C -0.123 4.123 7 C 0.004 3.996 8 C -0.523 4.523 9 H 0.072 0.928 10 C 0.069 3.931 11 N -0.905 5.905 12 Si 0.878 3.122 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.261 1.261 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.112 4.112 20 C -0.081 4.081 21 H 0.119 0.881 22 C 0.474 3.526 23 O -0.491 6.491 24 O -0.519 6.519 25 H 0.052 0.948 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.393 0.607 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.023 0.977 32 H 0.018 0.982 33 H 0.263 0.737 34 H 0.095 0.905 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.449 -22.798 12.773 26.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.111 3.889 3 N -0.376 5.376 4 C 0.306 3.694 5 O -0.415 6.415 6 C -0.163 4.163 7 C -0.034 4.034 8 C -0.561 4.561 9 H 0.090 0.910 10 C -0.133 4.133 11 N -0.544 5.544 12 Si 0.705 3.295 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.185 1.185 16 C -0.168 4.168 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.101 4.101 21 H 0.137 0.863 22 C 0.316 3.684 23 O -0.377 6.377 24 O -0.331 6.331 25 H 0.071 0.929 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.228 0.772 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 1.893 -22.852 11.629 25.711 hybrid contribution -0.565 0.306 0.285 0.702 sum 1.329 -22.546 11.913 25.535 Atomic orbital electron populations 1.22498 0.93895 1.01758 1.05553 1.19991 0.94516 0.82189 0.92185 1.46132 1.54595 1.10920 1.25926 1.21336 0.79243 0.88211 0.80599 1.90570 1.37588 1.77229 1.36118 1.21658 1.01640 0.89820 1.03180 1.19342 0.96612 0.95300 0.92176 1.21138 1.32322 0.94056 1.08605 0.91033 1.24971 0.95638 0.94645 0.97996 1.69917 1.45965 1.05509 1.33026 0.86789 0.81081 0.79871 0.81763 1.20291 1.21522 1.18514 1.21986 0.95639 1.00169 0.99026 1.21540 0.95639 1.01358 0.97360 1.21541 1.00666 0.99193 0.93933 1.21550 0.91361 1.02307 0.99710 1.21423 0.98415 1.01248 0.88994 0.86348 1.23489 0.77395 0.82910 0.84632 1.90767 1.34689 1.25505 1.86754 1.84526 1.72434 1.59214 1.16928 0.92950 0.90395 0.89738 0.77227 0.89831 0.89941 0.95867 0.96320 0.92784 0.88615 0.91512 0.91371 0.91741 0.91313 0.91687 0.90313 0.91124 0.73190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.43 8.08 37.16 0.30 -2.13 16 2 C 0.20 2.37 0.26 -131.82 -0.03 2.33 16 3 N -0.72 -10.12 3.14 -47.61 -0.15 -10.26 16 4 C 0.52 9.51 7.25 -10.98 -0.08 9.43 16 5 O -0.54 -11.47 12.19 5.55 0.07 -11.40 16 6 C -0.12 -2.48 5.64 -27.88 -0.16 -2.64 16 7 C 0.00 0.09 3.33 -27.88 -0.09 0.00 16 8 C -0.52 -15.28 9.66 -34.44 -0.33 -15.61 16 9 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 10 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 11 N -0.91 -28.48 13.96 55.43 0.77 -27.70 16 12 Si 0.88 22.95 27.47 -169.99 -4.67 18.29 16 13 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 H -0.26 -6.77 6.54 56.52 0.37 -6.40 16 16 C -0.13 -1.51 4.52 -26.73 -0.12 -1.63 16 17 C -0.12 -1.23 5.77 -26.73 -0.15 -1.38 16 18 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 19 C -0.11 -0.84 4.96 -26.75 -0.13 -0.97 16 20 C -0.08 -0.72 1.92 -91.79 -0.18 -0.89 16 21 H 0.12 0.84 8.14 -51.93 -0.42 0.41 16 22 C 0.47 4.62 6.91 36.01 0.25 4.87 16 23 O -0.49 -6.48 13.44 -18.75 -0.25 -6.73 16 24 O -0.52 -3.66 13.32 -39.27 -0.52 -4.18 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 26 H 0.08 1.15 5.52 -51.93 -0.29 0.86 16 27 H 0.08 1.41 6.17 -51.93 -0.32 1.09 16 28 H 0.39 4.91 6.65 -40.82 -0.27 4.64 16 29 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 32 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.10 1.45 6.17 -51.93 -0.32 1.13 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.81 7.60 -51.93 -0.39 0.41 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 41 H 0.07 0.58 6.86 -51.93 -0.36 0.22 16 42 H 0.41 1.41 9.10 45.56 0.41 1.83 16 LS Contribution 326.26 15.07 4.92 4.92 Total: -1.00 -35.30 326.26 -6.51 -41.81 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.69 Total: 2.95 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -0.99 Total: -7.68 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.62 Total: -37.97 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.71 Total: -22.31 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.67 Total: 18.29 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.30 -6.51 -41.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594053695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.552 kcal (2) G-P(sol) polarization free energy of solvation -35.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds