Wall clock time and date at job start Tue Mar 31 2020 05:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46493 * 109.47649 * 2 1 4 4 C 1.34784 * 119.99864 * 59.99998 * 3 2 1 5 5 O 1.21283 * 119.99649 * 359.72839 * 4 3 2 6 6 C 1.50694 * 119.99988 * 179.72721 * 4 3 2 7 7 C 1.53001 * 109.47168 * 179.97438 * 6 4 3 8 8 C 1.50699 * 109.47500 * 180.02562 * 7 6 4 9 9 H 1.08005 * 119.99776 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00239 * 180.02562 * 8 7 6 11 11 N 1.31516 * 119.99907 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00039 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46712 * 89.99864 * 12 10 8 14 14 H 1.48491 * 109.47281 * 209.99942 * 12 10 8 15 15 H 1.48504 * 109.46856 * 330.00094 * 12 10 8 16 16 C 1.53005 * 109.46908 * 120.00342 * 2 1 3 17 17 C 1.52994 * 109.47246 * 59.99756 * 16 2 1 18 18 C 1.53001 * 109.47365 * 60.00128 * 17 16 2 19 19 C 1.52999 * 109.46836 * 299.99787 * 18 17 16 20 20 C 1.53001 * 109.47013 * 239.99791 * 2 1 3 21 21 H 1.08993 * 109.47372 * 180.02562 * 20 2 1 22 22 C 1.50708 * 109.46841 * 60.00298 * 20 2 1 23 23 O 1.20827 * 119.99976 * 359.97438 * 22 20 2 24 24 O 1.34230 * 119.99901 * 179.97438 * 22 20 2 25 25 H 1.08998 * 109.46893 * 59.99537 * 1 2 3 26 26 H 1.09003 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46641 * 299.99954 * 1 2 3 28 28 H 0.97000 * 120.00740 * 239.72691 * 3 2 1 29 29 H 1.08998 * 109.47224 * 299.99701 * 6 4 3 30 30 H 1.09002 * 109.47054 * 60.00213 * 6 4 3 31 31 H 1.09000 * 109.47339 * 299.99895 * 7 6 4 32 32 H 1.09002 * 109.46926 * 60.00175 * 7 6 4 33 33 H 0.97001 * 119.99646 * 179.97438 * 11 10 8 34 34 H 1.09006 * 109.46676 * 179.97438 * 16 2 1 35 35 H 1.08996 * 109.47275 * 299.99425 * 16 2 1 36 36 H 1.09007 * 109.47198 * 179.97438 * 17 16 2 37 37 H 1.09001 * 109.47005 * 299.99934 * 17 16 2 38 38 H 1.08993 * 109.47372 * 59.99660 * 18 17 16 39 39 H 1.08994 * 109.47395 * 179.97438 * 18 17 16 40 40 H 1.09007 * 109.47491 * 179.97438 * 19 18 17 41 41 H 1.09001 * 109.47339 * 300.00075 * 19 18 17 42 42 H 0.96698 * 116.99735 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 1.6929 2.2110 1.0109 5 8 0.9915 1.8158 1.9180 6 6 2.2004 3.6300 1.0140 7 6 1.6888 4.3518 2.2623 8 6 2.1957 5.7710 2.2652 9 1 2.8201 6.1230 1.4572 10 6 1.8626 6.6199 3.2992 11 7 1.1020 6.1914 4.2828 12 14 2.4917 8.3789 3.3031 13 1 1.5187 9.2540 2.6011 14 1 2.6541 8.8434 4.7041 15 1 3.8021 8.4374 2.6070 16 6 2.0399 -0.7214 1.2493 17 6 1.5299 -2.1638 1.2492 18 6 2.0399 -2.8851 0.0000 19 6 1.5299 -2.1638 -1.2492 20 6 2.0400 -0.7213 -1.2492 21 1 3.1299 -0.7217 -1.2491 22 6 1.5376 -0.0108 -2.4797 23 8 0.8426 0.9713 -2.3688 24 8 1.8623 -0.4691 -3.6989 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 2.5794 1.6973 -0.7254 29 1 3.2903 3.6260 1.0173 30 1 1.8415 4.1462 0.1236 31 1 0.5988 4.3558 2.2587 32 1 2.0473 3.8357 3.1530 33 1 0.8680 6.7886 5.0105 34 1 3.1300 -0.7217 1.2490 35 1 1.6767 -0.2075 2.1392 36 1 1.8936 -2.6778 2.1390 37 1 0.4399 -2.1637 1.2492 38 1 3.1298 -2.8851 -0.0001 39 1 1.6769 -3.9128 0.0002 40 1 1.8935 -2.6774 -2.1393 41 1 0.4399 -2.1637 -1.2492 42 1 1.5168 0.0201 -4.4581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594053696.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:09 Heat of formation + Delta-G solvation = -149.781084 kcal Electronic energy + Delta-G solvation = -23453.564427 eV Core-core repulsion = 20011.683560 eV Total energy + Delta-G solvation = -3441.880867 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36628 -39.44558 -37.88247 -36.34038 -33.95805 -33.37527 -31.55392 -31.24500 -29.87878 -27.29198 -25.63656 -24.18422 -22.94974 -21.57102 -21.07869 -19.32964 -18.80937 -18.18506 -17.18517 -16.75222 -16.21749 -15.85038 -15.50707 -14.91567 -14.42499 -14.33038 -14.14260 -13.99533 -13.41489 -13.08591 -13.04479 -12.63095 -12.45391 -12.16505 -12.01397 -11.86993 -11.54684 -11.49231 -11.10787 -11.08090 -11.02649 -10.88719 -10.71175 -10.55179 -10.37162 -10.15207 -9.87196 -9.55869 -9.06624 -8.76627 -8.61560 -8.26968 -5.91581 -3.95436 1.98597 2.76096 3.36269 3.38164 3.41903 3.44535 3.53783 4.19150 4.50161 4.52882 4.58730 4.87299 4.97201 5.03041 5.11771 5.14384 5.23679 5.43343 5.49185 5.60476 5.63323 5.75393 5.79847 5.89172 5.91274 5.97242 6.12296 6.25751 6.29505 6.32721 6.34847 6.46143 6.69185 6.92772 6.98457 7.69340 7.79846 7.93645 8.02230 8.13017 8.45020 8.91846 9.13592 9.67719 11.19391 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026862 B = 0.003847 C = 0.003522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.127603 B = 7277.014107 C = 7948.057664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.198 3.802 3 N -0.731 5.731 4 C 0.517 3.483 5 O -0.532 6.532 6 C -0.131 4.131 7 C 0.039 3.961 8 C -0.526 4.526 9 H 0.055 0.945 10 C 0.058 3.942 11 N -0.890 5.890 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.119 4.119 19 C -0.108 4.108 20 C -0.082 4.082 21 H 0.112 0.888 22 C 0.474 3.526 23 O -0.490 6.490 24 O -0.519 6.519 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.083 0.917 28 H 0.392 0.608 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.260 0.740 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.217 -20.046 -14.787 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.112 3.888 3 N -0.384 5.384 4 C 0.306 3.694 5 O -0.407 6.407 6 C -0.171 4.171 7 C 0.001 3.999 8 C -0.564 4.564 9 H 0.073 0.927 10 C -0.144 4.144 11 N -0.529 5.529 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.199 1.199 16 C -0.168 4.168 17 C -0.159 4.159 18 C -0.156 4.156 19 C -0.146 4.146 20 C -0.101 4.101 21 H 0.130 0.870 22 C 0.315 3.685 23 O -0.376 6.376 24 O -0.332 6.332 25 H 0.094 0.906 26 H 0.076 0.924 27 H 0.102 0.898 28 H 0.226 0.774 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.571 -20.196 -13.568 24.466 hybrid contribution 0.425 1.541 -0.962 1.866 sum 2.996 -18.655 -14.530 23.835 Atomic orbital electron populations 1.22567 0.93894 1.01862 1.05375 1.19955 0.95126 0.81757 0.92000 1.46214 1.54763 1.11127 1.26250 1.21382 0.79357 0.88201 0.80480 1.90588 1.37053 1.77065 1.36039 1.21859 1.01179 0.90062 1.03986 1.18877 0.97080 0.93533 0.90391 1.21244 1.31538 0.96521 1.07109 0.92704 1.25015 0.95228 0.98519 0.95593 1.70003 1.36523 1.35724 1.10641 0.86606 0.79182 0.85094 0.77153 1.20705 1.21242 1.19920 1.21992 1.00486 0.95221 0.99146 1.21618 1.01491 0.95253 0.97576 1.21573 1.01073 0.98995 0.93965 1.21562 1.01850 0.91606 0.99608 1.21405 1.02877 0.96765 0.89062 0.87036 1.23501 0.77604 0.82763 0.84603 1.90770 1.34529 1.25580 1.86729 1.84528 1.72473 1.59221 1.16932 0.90644 0.92411 0.89812 0.77447 0.90540 0.90418 0.95843 0.95842 0.93020 0.91965 0.88516 0.91488 0.91245 0.91555 0.91293 0.90326 0.90703 0.73254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.59 7.39 37.16 0.27 -2.31 16 2 C 0.20 2.55 0.40 -131.82 -0.05 2.49 16 3 N -0.73 -11.03 4.20 -47.61 -0.20 -11.23 16 4 C 0.52 10.22 7.25 -10.98 -0.08 10.14 16 5 O -0.53 -12.23 12.19 5.56 0.07 -12.16 16 6 C -0.13 -2.79 5.64 -27.89 -0.16 -2.94 16 7 C 0.04 1.07 4.26 -27.88 -0.12 0.95 16 8 C -0.53 -15.28 9.11 -34.44 -0.31 -15.60 16 9 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 10 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 11 N -0.89 -27.86 13.29 55.43 0.74 -27.12 16 12 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 15 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 16 C -0.13 -1.64 4.66 -26.73 -0.12 -1.76 16 17 C -0.12 -1.16 5.65 -26.73 -0.15 -1.31 16 18 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 19 C -0.11 -0.83 4.86 -26.73 -0.13 -0.96 16 20 C -0.08 -0.77 1.99 -91.77 -0.18 -0.96 16 21 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 22 C 0.47 4.87 6.91 36.01 0.25 5.12 16 23 O -0.49 -6.75 13.44 -18.75 -0.25 -7.00 16 24 O -0.52 -3.86 13.33 -39.26 -0.52 -4.38 16 25 H 0.07 1.18 5.52 -51.93 -0.29 0.89 16 26 H 0.06 0.68 4.81 -51.93 -0.25 0.43 16 27 H 0.08 1.50 6.16 -51.93 -0.32 1.18 16 28 H 0.39 5.16 7.81 -40.82 -0.32 4.84 16 29 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 31 H 0.02 0.71 8.10 -51.93 -0.42 0.28 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.58 6.18 -51.93 -0.32 1.26 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.07 0.69 6.43 -51.93 -0.33 0.36 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.50 8.11 -51.92 -0.42 0.08 16 41 H 0.07 0.61 6.43 -51.93 -0.33 0.27 16 42 H 0.41 1.54 9.10 45.56 0.41 1.95 16 LS Contribution 326.59 15.07 4.92 4.92 Total: -1.00 -35.48 326.59 -6.82 -42.30 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -5.51 Total: 4.18 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.04 Total: -6.54 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.54 Total: -38.35 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.71 Total: -23.55 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -35.48 -6.82 -42.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594053696.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.479 kcal (2) G-P(sol) polarization free energy of solvation -35.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds