Wall clock time and date at job start Tue Mar 31 2020 05:42:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46499 * 109.47355 * 2 1 4 4 C 1.34777 * 120.00199 * 300.00752 * 3 2 1 5 5 O 1.21283 * 119.99750 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99928 * 180.27479 * 4 3 2 7 7 C 1.52996 * 109.47159 * 179.72352 * 6 4 3 8 8 C 1.50697 * 109.47491 * 179.97438 * 7 6 4 9 9 H 1.08001 * 119.99437 * 359.97438 * 8 7 6 10 10 C 1.37869 * 120.00278 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00172 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 120.00140 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47213 * 89.99904 * 12 10 8 14 14 H 1.48497 * 109.47216 * 209.99799 * 12 10 8 15 15 H 1.48504 * 109.47159 * 330.00245 * 12 10 8 16 16 C 1.53008 * 109.46561 * 240.00179 * 2 1 3 17 17 C 1.52995 * 109.47086 * 299.99930 * 16 2 1 18 18 C 1.52990 * 109.47353 * 299.99853 * 17 16 2 19 19 C 1.53001 * 109.47023 * 60.00524 * 18 17 16 20 20 C 1.52997 * 109.47337 * 120.00805 * 2 1 3 21 21 H 1.08998 * 109.47382 * 179.97438 * 20 2 1 22 22 C 1.50699 * 109.46897 * 299.99602 * 20 2 1 23 23 O 1.20828 * 120.00111 * 359.97438 * 22 20 2 24 24 O 1.34229 * 120.00066 * 179.97438 * 22 20 2 25 25 H 1.09001 * 109.47411 * 59.99214 * 1 2 3 26 26 H 1.08998 * 109.47530 * 179.97438 * 1 2 3 27 27 H 1.09011 * 109.46712 * 299.99388 * 1 2 3 28 28 H 0.97000 * 119.99484 * 119.99849 * 3 2 1 29 29 H 1.09004 * 109.46965 * 299.72211 * 6 4 3 30 30 H 1.08994 * 109.46990 * 59.72065 * 6 4 3 31 31 H 1.09004 * 109.47066 * 299.99797 * 7 6 4 32 32 H 1.09000 * 109.47234 * 59.99288 * 7 6 4 33 33 H 0.96998 * 120.00586 * 180.02562 * 11 10 8 34 34 H 1.09001 * 109.46762 * 60.00210 * 16 2 1 35 35 H 1.08999 * 109.46696 * 179.97438 * 16 2 1 36 36 H 1.08998 * 109.47142 * 60.00480 * 17 16 2 37 37 H 1.09011 * 109.46657 * 179.97438 * 17 16 2 38 38 H 1.09007 * 109.47253 * 180.02562 * 18 17 16 39 39 H 1.08998 * 109.47508 * 300.00403 * 18 17 16 40 40 H 1.08992 * 109.47503 * 59.99673 * 19 18 17 41 41 H 1.09008 * 109.47076 * 180.02562 * 19 18 17 42 42 H 0.96709 * 116.99663 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.6927 2.2112 -1.0107 5 8 0.9957 1.8144 -1.9205 6 6 2.2002 3.6301 -1.0138 7 6 1.6948 4.3499 -2.2657 8 6 2.2017 5.7690 -2.2685 9 1 2.8221 6.1223 -1.4581 10 6 1.8736 6.6162 -3.3055 11 7 2.3165 7.8546 -3.3082 12 14 0.8012 6.0048 -4.7075 13 1 -0.6266 6.2521 -4.3828 14 1 1.1575 6.7276 -5.9548 15 1 1.0201 4.5486 -4.8995 16 6 2.0399 -0.7213 -1.2494 17 6 1.5298 -2.1637 -1.2494 18 6 2.0399 -2.8850 -0.0003 19 6 1.5299 -2.1639 1.2490 20 6 2.0400 -0.7214 1.2491 21 1 3.1300 -0.7218 1.2489 22 6 1.5378 -0.0111 2.4796 23 8 0.8435 0.9716 2.3689 24 8 1.8617 -0.4701 3.6987 25 1 -0.3634 0.5140 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 2.5760 1.6983 0.7276 29 1 1.8374 4.1477 -0.1257 30 1 3.2902 3.6261 -1.0121 31 1 2.0576 3.8323 -3.1538 32 1 0.6048 4.3537 -2.2674 33 1 2.0854 8.4508 -4.0376 34 1 1.6765 -0.2073 -2.1393 35 1 3.1299 -0.7209 -1.2496 36 1 0.4399 -2.1637 -1.2493 37 1 1.8928 -2.6774 -2.1397 38 1 1.6769 -3.9129 -0.0005 39 1 3.1299 -2.8851 -0.0003 40 1 0.4400 -2.1638 1.2491 41 1 1.8937 -2.6775 2.1390 42 1 1.5162 0.0192 4.4581 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594053697.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:12 Heat of formation + Delta-G solvation = -147.171319 kcal Electronic energy + Delta-G solvation = -23528.650811 eV Core-core repulsion = 20086.883112 eV Total energy + Delta-G solvation = -3441.767699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.43200 -39.53285 -37.99188 -36.38307 -34.05905 -33.41521 -31.61993 -31.43963 -30.13711 -27.36607 -26.01109 -24.24205 -22.93437 -21.51728 -20.92038 -19.41274 -18.88152 -18.23000 -17.34448 -16.98911 -16.29072 -15.95729 -15.74379 -15.03934 -14.43544 -14.24615 -14.11232 -14.01191 -13.51391 -13.17261 -13.11741 -12.66384 -12.63624 -12.51605 -12.13865 -11.98769 -11.61285 -11.56754 -11.35377 -11.17327 -11.09239 -10.90817 -10.78311 -10.44347 -10.23338 -10.07281 -9.95418 -9.72207 -9.13788 -8.92330 -8.72441 -8.46381 -5.98929 -3.97197 1.94061 2.71635 3.23814 3.41042 3.42937 3.47409 3.58376 4.12663 4.46334 4.52369 4.54703 4.81236 4.91130 4.96009 5.06158 5.07372 5.17312 5.36737 5.43253 5.51288 5.55253 5.68851 5.73189 5.80021 5.84303 5.90168 6.05988 6.14450 6.17859 6.18740 6.27682 6.36093 6.60763 6.76554 6.82747 7.42854 7.50091 7.64956 7.82556 7.91032 8.55585 8.77883 9.04749 9.64369 11.14071 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025592 B = 0.004187 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.836799 B = 6686.248160 C = 7379.890759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.197 3.803 3 N -0.728 5.728 4 C 0.517 3.483 5 O -0.538 6.538 6 C -0.123 4.123 7 C 0.003 3.997 8 C -0.524 4.524 9 H 0.072 0.928 10 C 0.068 3.932 11 N -0.905 5.905 12 Si 0.878 3.122 13 H -0.277 1.277 14 H -0.289 1.289 15 H -0.261 1.261 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.119 4.119 19 C -0.108 4.108 20 C -0.082 4.082 21 H 0.113 0.887 22 C 0.474 3.526 23 O -0.491 6.491 24 O -0.519 6.519 25 H 0.082 0.918 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.394 0.606 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.023 0.977 32 H 0.019 0.981 33 H 0.263 0.737 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.491 -24.158 12.799 27.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.111 3.889 3 N -0.381 5.381 4 C 0.306 3.694 5 O -0.414 6.414 6 C -0.163 4.163 7 C -0.035 4.035 8 C -0.561 4.561 9 H 0.090 0.910 10 C -0.133 4.133 11 N -0.544 5.544 12 Si 0.705 3.295 13 H -0.203 1.203 14 H -0.215 1.215 15 H -0.185 1.185 16 C -0.168 4.168 17 C -0.159 4.159 18 C -0.156 4.156 19 C -0.146 4.146 20 C -0.101 4.101 21 H 0.130 0.870 22 C 0.316 3.684 23 O -0.377 6.377 24 O -0.331 6.331 25 H 0.101 0.899 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.228 0.772 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.041 0.959 32 H 0.037 0.963 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -0.064 -24.201 11.651 26.860 hybrid contribution -0.423 0.408 0.289 0.655 sum -0.487 -23.793 11.941 26.626 Atomic orbital electron populations 1.22567 0.93867 1.01944 1.05326 1.19974 0.95137 0.81652 0.92139 1.46175 1.54727 1.11107 1.26065 1.21360 0.79217 0.88237 0.80548 1.90572 1.37622 1.77185 1.36065 1.21662 1.01654 0.89784 1.03198 1.19346 0.96645 0.95324 0.92147 1.21136 1.32332 0.94200 1.08476 0.91021 1.24969 0.95632 0.94645 0.98010 1.69916 1.45946 1.05636 1.32920 0.86788 0.81070 0.79882 0.81756 1.20281 1.21511 1.18515 1.21991 1.00564 0.95251 0.99035 1.21613 1.01463 0.95212 0.97635 1.21574 1.01116 0.99018 0.93918 1.21562 1.01837 0.91583 0.99647 1.21397 1.02941 0.96768 0.89013 0.86960 1.23480 0.77578 0.82747 0.84635 1.90769 1.34594 1.25570 1.86755 1.84527 1.72472 1.59177 1.16924 0.89921 0.92334 0.90571 0.77231 0.89781 0.89869 0.95859 0.96300 0.92775 0.88598 0.91883 0.91275 0.91483 0.91258 0.91509 0.90708 0.90256 0.73177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 7.39 37.16 0.27 -2.17 16 2 C 0.20 2.40 0.40 -131.82 -0.05 2.35 16 3 N -0.73 -10.43 4.20 -47.60 -0.20 -10.63 16 4 C 0.52 9.65 7.25 -10.98 -0.08 9.57 16 5 O -0.54 -11.57 12.19 5.55 0.07 -11.50 16 6 C -0.12 -2.50 5.64 -27.88 -0.16 -2.66 16 7 C 0.00 0.08 3.33 -27.89 -0.09 -0.01 16 8 C -0.52 -15.33 9.66 -34.44 -0.33 -15.67 16 9 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 10 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 11 N -0.91 -28.52 13.96 55.43 0.77 -27.75 16 12 Si 0.88 22.99 27.47 -169.99 -4.67 18.32 16 13 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 15 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 16 C -0.13 -1.54 4.66 -26.73 -0.12 -1.66 16 17 C -0.12 -1.08 5.65 -26.74 -0.15 -1.23 16 18 C -0.12 -0.80 5.92 -26.74 -0.16 -0.96 16 19 C -0.11 -0.78 4.86 -26.73 -0.13 -0.91 16 20 C -0.08 -0.73 1.99 -91.77 -0.18 -0.92 16 21 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 22 C 0.47 4.67 6.90 36.01 0.25 4.91 16 23 O -0.49 -6.52 13.44 -18.75 -0.25 -6.77 16 24 O -0.52 -3.68 13.32 -39.26 -0.52 -4.21 16 25 H 0.08 1.39 6.17 -51.93 -0.32 1.07 16 26 H 0.06 0.65 4.81 -51.93 -0.25 0.40 16 27 H 0.08 1.14 5.52 -51.92 -0.29 0.85 16 28 H 0.39 4.93 7.80 -40.82 -0.32 4.61 16 29 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 30 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 32 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 33 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 34 H 0.10 1.47 6.17 -51.93 -0.32 1.15 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.07 0.64 6.43 -51.93 -0.33 0.31 16 37 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.57 6.43 -51.93 -0.33 0.23 16 41 H 0.08 0.47 8.11 -51.92 -0.42 0.05 16 42 H 0.41 1.42 9.10 45.56 0.41 1.84 16 LS Contribution 322.97 15.07 4.87 4.87 Total: -1.00 -35.56 322.97 -6.45 -42.01 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.48 Total: 3.05 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: -1.04 Total: -7.38 kcal Atomic # 7 Polarization: -38.95 SS G_CDS: 0.57 Total: -38.37 kcal Atomic # 8 Polarization: -21.77 SS G_CDS: -0.71 Total: -22.48 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.67 Total: 18.32 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -35.56 -6.45 -42.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594053697.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.162 kcal (2) G-P(sol) polarization free energy of solvation -35.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds