Wall clock time and date at job start Tue Mar 31 2020 05:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47308 * 2 1 4 4 C 1.34777 * 119.99875 * 60.00593 * 3 2 1 5 5 O 1.21279 * 120.00162 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00141 * 179.97438 * 4 3 2 7 7 C 1.53002 * 109.47300 * 179.97438 * 6 4 3 8 8 C 1.50706 * 109.46925 * 180.02562 * 7 6 4 9 9 H 1.07999 * 120.00196 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99394 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00338 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 119.99426 * 180.02562 * 10 8 7 13 13 H 1.48501 * 109.47361 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47264 * 120.00115 * 12 10 8 15 15 H 1.48500 * 109.46969 * 239.99720 * 12 10 8 16 16 C 1.53000 * 109.46886 * 120.00593 * 2 1 3 17 17 C 1.53005 * 109.46632 * 179.97438 * 16 2 1 18 18 C 1.52993 * 109.47212 * 299.99413 * 17 16 2 19 19 C 1.53005 * 109.46914 * 60.00193 * 18 17 16 20 20 C 1.52997 * 109.47452 * 300.00025 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99992 * 20 19 18 22 22 C 1.50701 * 109.47212 * 179.97438 * 20 19 18 23 23 O 1.20822 * 119.99802 * 239.99925 * 22 20 19 24 24 O 1.34224 * 120.00059 * 60.00047 * 22 20 19 25 25 H 1.09004 * 109.47086 * 59.99554 * 1 2 3 26 26 H 1.08992 * 109.47514 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47109 * 300.00027 * 1 2 3 28 28 H 0.96999 * 120.00082 * 240.00256 * 3 2 1 29 29 H 1.09004 * 109.47043 * 59.99777 * 6 4 3 30 30 H 1.09004 * 109.47476 * 299.99851 * 6 4 3 31 31 H 1.09000 * 109.46497 * 60.00269 * 7 6 4 32 32 H 1.09000 * 109.47312 * 300.00049 * 7 6 4 33 33 H 0.96996 * 119.99730 * 180.02562 * 11 10 8 34 34 H 1.09001 * 109.47194 * 299.99323 * 16 2 1 35 35 H 1.09002 * 109.47398 * 59.99503 * 16 2 1 36 36 H 1.09004 * 109.46832 * 179.97438 * 17 16 2 37 37 H 1.08992 * 109.47199 * 60.00241 * 17 16 2 38 38 H 1.09002 * 109.47722 * 300.00509 * 18 17 16 39 39 H 1.08992 * 109.47399 * 180.02562 * 18 17 16 40 40 H 1.09001 * 109.46812 * 179.97438 * 19 18 17 41 41 H 1.09002 * 109.46935 * 60.00150 * 19 18 17 42 42 H 0.96701 * 117.00226 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.6929 2.2110 1.0109 5 8 0.9953 1.8145 1.9203 6 6 2.1957 3.6316 1.0112 7 6 1.6852 4.3530 2.2602 8 6 2.1876 5.7739 2.2602 9 1 2.8084 6.1271 1.4501 10 6 1.8544 6.6228 3.2943 11 7 1.0980 6.1928 4.2804 12 14 2.4765 8.3842 3.2939 13 1 3.3016 8.6175 2.0814 14 1 1.3213 9.3172 3.2942 15 1 3.3018 8.6179 4.5061 16 6 2.0399 -0.7214 1.2492 17 6 3.5700 -0.7219 1.2488 18 6 4.0794 -1.4435 -0.0004 19 6 3.5694 -0.7222 -1.2496 20 6 2.0394 -0.7216 -1.2493 21 1 1.6757 -1.7491 -1.2491 22 6 1.5371 -0.0105 -2.4795 23 8 0.8429 0.9720 -2.3681 24 8 1.8609 -0.4688 -3.6988 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 2.5760 1.6984 -0.7275 29 1 1.8327 4.1457 0.1212 30 1 3.2857 3.6313 1.0115 31 1 2.0479 3.8390 3.1503 32 1 0.5952 4.3534 2.2596 33 1 0.8634 6.7902 5.0077 34 1 1.6767 -0.2076 2.1392 35 1 1.6765 -1.7490 1.2492 36 1 3.9333 -1.2355 2.1390 37 1 3.9337 0.3055 1.2487 38 1 3.7157 -2.4710 -0.0003 39 1 5.1694 -1.4443 -0.0005 40 1 3.9327 -1.2360 -2.1396 41 1 3.9331 0.3054 -1.2498 42 1 1.5155 0.0207 -4.4578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594053698.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:16 Heat of formation + Delta-G solvation = -150.975275 kcal Electronic energy + Delta-G solvation = -23660.038264 eV Core-core repulsion = 20218.105613 eV Total energy + Delta-G solvation = -3441.932651 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.36328 -39.48769 -37.62394 -36.34032 -33.72588 -33.35117 -31.57413 -31.51681 -30.27582 -26.87095 -25.65037 -24.14377 -22.58111 -21.59983 -21.09158 -19.76942 -18.87061 -18.18140 -17.08120 -16.82078 -15.95610 -15.77806 -15.29351 -14.94010 -14.69046 -14.38338 -13.99158 -13.84544 -13.29010 -13.25846 -12.73360 -12.71598 -12.41186 -12.13824 -12.02540 -11.90219 -11.62819 -11.54832 -11.25145 -11.07515 -10.99060 -10.89361 -10.72751 -10.53965 -10.31790 -10.07084 -9.87512 -9.55737 -9.05269 -8.76883 -8.58133 -8.27316 -5.91810 -3.95535 1.98952 2.76244 3.35202 3.39852 3.42116 3.45557 3.60348 4.20668 4.43470 4.51540 4.59289 4.92340 4.98846 5.05629 5.15684 5.21746 5.35282 5.43253 5.45478 5.61913 5.70918 5.73612 5.81278 5.91192 5.94874 6.04597 6.13553 6.27807 6.31572 6.32793 6.34840 6.46111 6.65990 6.94984 6.98816 7.69420 7.80173 7.93767 8.04016 8.13008 8.45058 8.93555 9.13844 9.67699 11.19196 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.023585 B = 0.004083 C = 0.003899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.898922 B = 6856.662579 C = 7179.095504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.198 3.802 3 N -0.724 5.724 4 C 0.517 3.483 5 O -0.532 6.532 6 C -0.131 4.131 7 C 0.039 3.961 8 C -0.525 4.525 9 H 0.055 0.945 10 C 0.058 3.942 11 N -0.890 5.890 12 Si 0.891 3.109 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.284 1.284 16 C -0.130 4.130 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.111 4.111 20 C -0.081 4.081 21 H 0.118 0.882 22 C 0.474 3.526 23 O -0.490 6.490 24 O -0.519 6.519 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.085 0.915 28 H 0.391 0.609 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.259 0.741 34 H 0.096 0.904 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.109 -18.681 -14.814 24.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.112 3.888 3 N -0.378 5.378 4 C 0.306 3.694 5 O -0.408 6.408 6 C -0.171 4.171 7 C 0.001 3.999 8 C -0.563 4.563 9 H 0.073 0.927 10 C -0.144 4.144 11 N -0.529 5.529 12 Si 0.719 3.281 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.211 1.211 16 C -0.168 4.168 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.149 4.149 20 C -0.101 4.101 21 H 0.136 0.864 22 C 0.316 3.684 23 O -0.377 6.377 24 O -0.332 6.332 25 H 0.095 0.905 26 H 0.070 0.930 27 H 0.104 0.896 28 H 0.226 0.774 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.088 0.912 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 4.466 -18.843 -13.601 23.665 hybrid contribution 0.277 1.440 -0.945 1.745 sum 4.744 -17.403 -14.546 23.172 Atomic orbital electron populations 1.22498 0.93944 1.01683 1.05588 1.19973 0.94491 0.82311 0.92054 1.46167 1.54780 1.10879 1.26005 1.21350 0.79328 0.88187 0.80568 1.90584 1.37217 1.77076 1.35935 1.21856 1.01156 0.90113 1.03962 1.18877 0.97080 0.93531 0.90383 1.21282 1.31657 0.96415 1.06955 0.92666 1.25016 0.95225 0.98518 0.95609 1.70010 1.36670 1.35639 1.10566 0.86558 0.78599 0.85076 0.77861 1.19792 1.21046 1.21051 1.21990 0.95572 1.00134 0.99141 1.21533 0.95717 1.01327 0.97276 1.21539 1.00596 0.99198 0.93994 1.21552 0.91413 1.02256 0.99657 1.21438 0.98366 1.01238 0.89043 0.86383 1.23502 0.77408 0.82935 0.84599 1.90767 1.34647 1.25512 1.86727 1.84527 1.72493 1.59195 1.16937 0.90470 0.93023 0.89647 0.77441 0.90474 0.90612 0.95852 0.95855 0.93081 0.88518 0.91576 0.91759 0.91380 0.91711 0.91383 0.90398 0.91163 0.73259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.57 8.08 37.16 0.30 -2.27 16 2 C 0.20 2.51 0.26 -131.82 -0.03 2.48 16 3 N -0.72 -10.69 3.14 -47.61 -0.15 -10.84 16 4 C 0.52 10.07 7.25 -10.99 -0.08 9.99 16 5 O -0.53 -12.12 12.19 5.56 0.07 -12.05 16 6 C -0.13 -2.77 5.64 -27.88 -0.16 -2.92 16 7 C 0.04 1.07 4.26 -27.88 -0.12 0.95 16 8 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 9 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -27.80 13.29 55.43 0.74 -27.06 16 12 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 13 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 16 C -0.13 -1.61 4.52 -26.73 -0.12 -1.73 16 17 C -0.12 -1.30 5.77 -26.73 -0.15 -1.45 16 18 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 19 C -0.11 -0.88 4.96 -26.73 -0.13 -1.02 16 20 C -0.08 -0.76 1.93 -91.77 -0.18 -0.94 16 21 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 22 C 0.47 4.83 6.90 36.01 0.25 5.07 16 23 O -0.49 -6.70 13.43 -18.75 -0.25 -6.95 16 24 O -0.52 -3.83 13.33 -39.24 -0.52 -4.35 16 25 H 0.08 1.19 5.52 -51.93 -0.29 0.91 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 1.51 6.17 -51.93 -0.32 1.19 16 28 H 0.39 5.13 6.64 -40.82 -0.27 4.86 16 29 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 30 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.10 1.56 6.17 -51.93 -0.32 1.24 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.85 7.60 -51.93 -0.39 0.46 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.52 8.12 -51.93 -0.42 0.10 16 41 H 0.07 0.60 6.86 -51.93 -0.36 0.25 16 42 H 0.41 1.52 9.10 45.56 0.41 1.93 16 LS Contribution 329.86 15.07 4.97 4.97 Total: -1.00 -35.22 329.86 -6.89 -42.10 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -5.72 Total: 4.01 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -0.99 Total: -6.83 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.59 Total: -37.90 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.71 Total: -23.35 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.22 -6.89 -42.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594053698.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.871 kcal (2) G-P(sol) polarization free energy of solvation -35.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds