Wall clock time and date at job start Tue Mar 31 2020 05:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99724 * 2 1 4 4 H 1.48496 * 109.47074 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46937 * 300.00229 * 3 2 1 6 6 H 1.48500 * 109.47188 * 60.00268 * 3 2 1 7 7 C 1.37872 * 120.00458 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00243 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.53005 * 109.47258 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47258 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99913 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99853 * 179.97438 * 11 10 9 14 14 C 1.46922 * 120.62954 * 0.02562 * 13 11 10 15 15 C 1.53191 * 108.77579 * 126.41269 * 14 13 11 16 16 C 1.53038 * 109.31402 * 54.63270 * 15 14 13 17 17 C 1.53041 * 109.53685 * 298.63805 * 16 15 14 18 18 H 1.09005 * 109.49742 * 301.38087 * 17 16 15 19 19 C 1.53003 * 109.49862 * 181.31628 * 17 16 15 20 20 C 1.52996 * 109.47301 * 174.99652 * 19 17 16 21 21 C 1.50697 * 109.47491 * 179.97438 * 20 19 17 22 22 O 1.20833 * 119.99747 * 0.02562 * 21 20 19 23 23 O 1.34230 * 120.00262 * 179.72204 * 21 20 19 24 24 C 1.46926 * 120.62683 * 180.02562 * 13 11 10 25 25 H 0.97000 * 120.00458 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47440 * 60.00067 * 9 7 2 27 27 H 1.09000 * 109.47294 * 300.00006 * 9 7 2 28 28 H 1.08998 * 109.47032 * 59.99582 * 10 9 7 29 29 H 1.09007 * 109.46547 * 299.99797 * 10 9 7 30 30 H 1.08995 * 109.59025 * 6.62506 * 14 13 11 31 31 H 1.09008 * 109.58503 * 246.19677 * 14 13 11 32 32 H 1.09002 * 109.49716 * 294.67926 * 15 14 13 33 33 H 1.09007 * 109.49935 * 174.58414 * 15 14 13 34 34 H 1.08998 * 109.46138 * 178.61754 * 16 15 14 35 35 H 1.08995 * 109.46085 * 58.65576 * 16 15 14 36 36 H 1.09004 * 109.47038 * 54.99662 * 19 17 16 37 37 H 1.08994 * 109.46775 * 294.99895 * 19 17 16 38 38 H 1.09004 * 109.47066 * 60.00027 * 20 19 17 39 39 H 1.09000 * 109.47234 * 300.00536 * 20 19 17 40 40 H 0.96699 * 116.99771 * 180.27188 * 23 21 20 41 41 H 1.09003 * 109.58466 * 113.80416 * 24 13 11 42 42 H 1.08998 * 109.58962 * 353.37470 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 0.0001 12 8 0.2791 -4.9672 0.0010 13 7 2.1659 -6.1343 -0.0003 14 6 3.6350 -6.1504 -0.0008 15 6 4.1190 -7.0169 1.1661 16 6 3.4753 -8.4019 1.0692 17 6 1.9539 -8.2670 1.1662 18 1 1.6905 -7.7878 2.1092 19 6 1.3131 -9.6549 1.1022 20 6 -0.1956 -9.5308 1.3240 21 6 -0.8269 -10.8977 1.2604 22 8 -0.1404 -11.8714 1.0588 23 8 -2.1510 -11.0342 1.4337 24 6 1.4453 -7.4148 -0.0003 25 1 -0.4851 0.8400 0.0004 26 1 0.6241 -2.5567 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8721 -3.6042 0.8894 29 1 2.8720 -3.6042 -0.8906 30 1 4.0116 -5.1345 0.1177 31 1 3.9955 -6.5687 -0.9407 32 1 3.8354 -6.5489 2.1088 33 1 5.2037 -7.1158 1.1204 34 1 3.8370 -9.0283 1.8845 35 1 3.7392 -8.8591 0.1156 36 1 1.7432 -10.2898 1.8769 37 1 1.5013 -10.0972 0.1240 38 1 -0.6257 -8.8959 0.5494 39 1 -0.3839 -9.0884 2.3023 40 1 -2.5094 -11.9312 1.3882 41 1 1.6270 -7.9363 -0.9400 42 1 0.3772 -7.2330 0.1186 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:01 Heat of formation + Delta-G solvation = -159.539137 kcal Electronic energy + Delta-G solvation = -22298.046757 eV Core-core repulsion = 18855.742749 eV Total energy + Delta-G solvation = -3442.304008 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.59355 -39.89552 -37.62978 -36.44591 -34.65290 -33.47366 -32.28192 -31.12399 -29.96789 -26.49340 -25.41649 -24.66668 -22.56406 -21.63415 -20.84689 -20.16688 -18.52377 -18.28319 -17.10572 -16.66667 -16.53840 -15.83737 -15.58462 -15.14972 -14.69949 -14.41713 -14.26866 -13.82667 -13.62813 -13.43162 -13.22470 -12.84316 -12.57578 -12.19951 -12.12393 -11.96666 -11.81212 -11.46810 -11.19001 -11.15719 -10.96505 -10.91662 -10.85656 -10.71796 -10.58150 -10.48041 -9.96029 -9.60188 -9.16181 -8.97537 -8.40846 -8.30772 -5.95989 -4.00310 1.92817 2.76946 3.21116 3.29438 3.32456 3.39850 3.43010 4.35950 4.47097 4.55714 4.57521 4.79688 4.84377 4.98269 5.01831 5.18820 5.27871 5.33688 5.39052 5.40098 5.49050 5.58952 5.60602 5.72591 5.75057 5.79965 5.91404 5.98442 6.05012 6.20361 6.21775 6.21970 6.25933 6.74757 6.91777 7.60593 7.74813 7.76545 7.86746 8.07470 8.38828 8.75060 9.08402 9.63293 11.14985 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025111 B = 0.003138 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.800302 B = 8920.871805 C = 9854.493848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.128 4.128 11 C 0.513 3.487 12 O -0.535 6.535 13 N -0.625 5.625 14 C 0.107 3.893 15 C -0.136 4.136 16 C -0.112 4.112 17 C -0.103 4.103 18 H 0.079 0.921 19 C -0.099 4.099 20 C -0.120 4.120 21 C 0.480 3.520 22 O -0.520 6.520 23 O -0.517 6.517 24 C 0.112 3.888 25 H 0.260 0.740 26 H 0.023 0.977 27 H 0.023 0.977 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.109 0.891 40 H 0.409 0.591 41 H 0.061 0.939 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.101 -21.752 2.802 22.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.168 4.168 11 C 0.303 3.697 12 O -0.411 6.411 13 N -0.361 5.361 14 C -0.016 4.016 15 C -0.174 4.174 16 C -0.149 4.149 17 C -0.122 4.122 18 H 0.097 0.903 19 C -0.137 4.137 20 C -0.158 4.158 21 C 0.323 3.677 22 O -0.409 6.409 23 O -0.329 6.329 24 C -0.011 4.011 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.041 0.959 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.127 0.873 40 H 0.267 0.733 41 H 0.079 0.921 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 4.626 -21.465 2.757 22.131 hybrid contribution 0.245 0.243 -0.016 0.345 sum 4.871 -21.223 2.740 21.946 Atomic orbital electron populations 1.70006 1.06046 1.26455 1.50309 1.25025 0.94821 0.99222 0.95335 0.86547 0.80008 0.83884 0.77586 1.19756 1.21025 1.21022 1.21254 0.92937 0.91008 1.51218 0.92587 1.18910 0.93184 0.89400 0.98586 1.21879 1.00714 0.91995 1.02231 1.21586 0.88406 0.85500 0.74180 1.90649 1.14404 1.87180 1.48824 1.48278 1.06514 1.05730 1.75534 1.21705 0.80075 1.01737 0.98071 1.21933 1.00283 0.95770 0.99437 1.21532 0.94156 0.97037 1.02218 1.21564 0.95775 0.94850 1.00057 0.90299 1.21432 0.91696 0.96857 1.03737 1.21527 0.96564 0.91208 1.06479 1.23663 0.79852 0.92631 0.71556 1.90719 1.63325 1.41562 1.45301 1.84579 1.25256 1.38930 1.84138 1.21601 0.98381 0.84010 0.97121 0.93013 0.95849 0.95860 0.90303 0.90319 0.88978 0.91793 0.91280 0.90738 0.91696 0.91697 0.90665 0.90727 0.87041 0.87297 0.73286 0.92076 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.38 13.29 55.43 0.74 -26.64 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 7 C -0.53 -14.86 9.11 -34.44 -0.31 -15.17 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 0.99 4.26 -27.88 -0.12 0.87 16 10 C -0.13 -2.60 3.99 -27.88 -0.11 -2.71 16 11 C 0.51 9.90 7.70 -10.98 -0.08 9.81 16 12 O -0.54 -12.47 15.39 5.56 0.09 -12.39 16 13 N -0.62 -8.96 2.97 -172.79 -0.51 -9.47 16 14 C 0.11 1.18 6.34 -3.71 -0.02 1.15 16 15 C -0.14 -1.21 6.08 -26.61 -0.16 -1.37 16 16 C -0.11 -0.92 5.17 -26.69 -0.14 -1.06 16 17 C -0.10 -0.96 2.34 -90.52 -0.21 -1.17 16 18 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 19 C -0.10 -0.82 3.98 -26.73 -0.11 -0.93 16 20 C -0.12 -0.99 5.57 -27.89 -0.16 -1.15 16 21 C 0.48 4.50 8.33 36.00 0.30 4.80 16 22 O -0.52 -6.31 16.74 -18.76 -0.31 -6.62 16 23 O -0.52 -3.98 13.42 -39.26 -0.53 -4.51 16 24 C 0.11 1.34 5.32 -3.73 -0.02 1.32 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 28 H 0.08 1.46 7.69 -51.93 -0.40 1.06 16 29 H 0.08 1.46 7.94 -51.92 -0.41 1.05 16 30 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 31 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.11 0.92 6.70 -51.93 -0.35 0.57 16 39 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.41 1.42 9.10 45.56 0.41 1.83 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.09 1.25 5.73 -51.93 -0.30 0.95 16 LS Contribution 343.00 15.07 5.17 5.17 Total: -1.00 -36.05 343.00 -7.58 -43.63 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: -5.96 Total: -1.71 kcal Atomic # 6 Polarization: -2.79 SS G_CDS: -1.24 Total: -4.03 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.22 Total: -36.11 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.76 Total: -23.52 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -36.05 -7.58 -43.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.905 kcal (2) G-P(sol) polarization free energy of solvation -36.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds