Wall clock time and date at job start Tue Mar 31 2020 05:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.46973 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00119 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99735 * 180.02562 * 11 10 9 14 14 C 1.46926 * 120.63351 * 359.97438 * 13 11 10 15 15 C 1.53193 * 108.77755 * 233.58934 * 14 13 11 16 16 C 1.53042 * 109.31298 * 305.36822 * 15 14 13 17 17 C 1.53038 * 109.54053 * 61.36287 * 16 15 14 18 18 H 1.08993 * 109.49584 * 58.62009 * 17 16 15 19 19 C 1.52998 * 109.49672 * 178.68493 * 17 16 15 20 20 C 1.52997 * 109.47150 * 184.99915 * 19 17 16 21 21 C 1.50704 * 109.47133 * 180.02562 * 20 19 17 22 22 O 1.20823 * 120.00108 * 0.02562 * 21 20 19 23 23 O 1.34229 * 119.99867 * 180.02562 * 21 20 19 24 24 C 1.46924 * 120.62710 * 179.72155 * 13 11 10 25 25 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 27 27 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 28 28 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 29 29 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 30 30 H 1.08999 * 109.58150 * 353.37797 * 14 13 11 31 31 H 1.09000 * 109.58355 * 113.65508 * 14 13 11 32 32 H 1.09001 * 109.49701 * 65.31552 * 15 14 13 33 33 H 1.08995 * 109.49952 * 185.41163 * 15 14 13 34 34 H 1.08995 * 109.46123 * 181.38975 * 16 15 14 35 35 H 1.09004 * 109.45633 * 301.35825 * 16 15 14 36 36 H 1.08997 * 109.47481 * 305.00493 * 19 17 16 37 37 H 1.09003 * 109.47232 * 65.00284 * 19 17 16 38 38 H 1.09004 * 109.47190 * 300.00311 * 20 19 17 39 39 H 1.09007 * 109.47181 * 59.99824 * 20 19 17 40 40 H 0.96696 * 117.00160 * 180.02562 * 23 21 20 41 41 H 1.09005 * 109.58736 * 246.19378 * 24 13 11 42 42 H 1.09000 * 109.59014 * 6.62371 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4919 -4.9671 -0.0001 12 8 0.2791 -4.9671 -0.0010 13 7 2.1658 -6.1343 0.0003 14 6 3.6350 -6.1505 0.0008 15 6 4.1190 -7.0170 -1.1661 16 6 3.4751 -8.4019 -1.0693 17 6 1.9537 -8.2671 -1.1663 18 1 1.6904 -7.7879 -2.1092 19 6 1.3129 -9.6549 -1.1024 20 6 -0.1958 -9.5307 -1.3241 21 6 -0.8271 -10.8977 -1.2605 22 8 -0.1408 -11.8713 -1.0580 23 8 -2.1518 -11.0336 -1.4288 24 6 1.4452 -7.4147 0.0058 25 1 -0.4850 -0.8401 -0.0004 26 1 0.6241 -2.5566 0.8903 27 1 0.6247 -2.5571 -0.8897 28 1 2.8720 -3.6043 -0.8894 29 1 2.8720 -3.6043 0.8906 30 1 4.0115 -5.1345 -0.1176 31 1 3.9954 -6.5664 0.9417 32 1 3.8353 -6.5490 -2.1088 33 1 5.2034 -7.1159 -1.1205 34 1 3.8368 -9.0284 -1.8845 35 1 3.7388 -8.8591 -0.1155 36 1 1.7430 -10.2898 -1.8769 37 1 1.5011 -10.0973 -0.1241 38 1 -0.6259 -8.8958 -0.5495 39 1 -0.3841 -9.0883 -2.3024 40 1 -2.5110 -11.9300 -1.3790 41 1 1.6305 -7.9342 0.9460 42 1 0.3766 -7.2332 -0.1093 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606286.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:04 Heat of formation + Delta-G solvation = -163.893502 kcal Electronic energy + Delta-G solvation = -22336.812876 eV Core-core repulsion = 18894.320049 eV Total energy + Delta-G solvation = -3442.492827 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.62824 -39.96776 -37.70633 -36.47978 -34.70931 -33.80582 -32.34888 -31.06426 -29.94644 -26.30324 -25.45514 -24.38851 -22.61432 -21.84804 -20.91270 -20.27549 -18.63441 -18.33184 -17.23001 -16.75825 -16.57941 -16.09360 -15.68222 -15.26724 -14.80925 -14.33942 -13.90440 -13.74365 -13.66423 -13.52097 -13.36093 -13.04265 -12.67692 -12.25235 -12.06552 -12.04389 -11.85195 -11.62253 -11.37660 -11.22313 -10.99746 -10.91209 -10.82298 -10.77678 -10.55788 -10.12450 -10.11378 -9.87031 -9.24977 -8.52752 -8.47680 -8.27941 -6.31567 -4.01714 1.89738 2.73681 3.10617 3.21515 3.45194 3.47578 3.66455 4.31539 4.51017 4.52511 4.57514 4.75043 4.79664 4.92759 4.96767 5.12940 5.22280 5.29206 5.33012 5.43343 5.46078 5.53934 5.55775 5.67294 5.69747 5.75446 5.85829 5.93599 5.98365 6.08876 6.09831 6.17275 6.21042 6.65148 6.77577 7.52050 7.57408 7.57595 7.66561 8.19767 8.49742 8.63836 8.92464 9.72003 11.09410 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025154 B = 0.003148 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.897215 B = 8891.481301 C = 9822.992018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 1.070 2.930 4 H -0.282 1.282 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.608 4.608 8 H 0.049 0.951 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.513 3.487 12 O -0.538 6.538 13 N -0.624 5.624 14 C 0.107 3.893 15 C -0.136 4.136 16 C -0.112 4.112 17 C -0.103 4.103 18 H 0.079 0.921 19 C -0.099 4.099 20 C -0.120 4.120 21 C 0.480 3.520 22 O -0.520 6.520 23 O -0.517 6.517 24 C 0.112 3.888 25 H 0.272 0.728 26 H 0.014 0.986 27 H 0.014 0.986 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.409 0.591 41 H 0.062 0.938 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.571 -22.086 -2.793 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.189 4.189 3 Si 0.898 3.102 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.647 4.647 8 H 0.067 0.933 9 C -0.013 4.013 10 C -0.161 4.161 11 C 0.303 3.697 12 O -0.414 6.414 13 N -0.359 5.359 14 C -0.016 4.016 15 C -0.174 4.174 16 C -0.150 4.150 17 C -0.122 4.122 18 H 0.097 0.903 19 C -0.137 4.137 20 C -0.158 4.158 21 C 0.323 3.677 22 O -0.409 6.409 23 O -0.329 6.329 24 C -0.011 4.011 25 H 0.083 0.917 26 H 0.032 0.968 27 H 0.032 0.968 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.267 0.733 41 H 0.080 0.920 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.053 -20.272 -2.752 21.073 hybrid contribution 0.068 -2.432 0.023 2.433 sum 5.121 -22.705 -2.729 23.434 Atomic orbital electron populations 1.70737 1.06910 1.30989 1.46016 1.25845 0.96579 1.02675 0.93840 0.83543 0.74861 0.75394 0.76408 1.20766 1.21471 1.21480 1.22028 0.94129 0.92023 1.56493 0.93304 1.19022 0.93836 0.91182 0.97268 1.21732 1.00416 0.91502 1.02466 1.21565 0.88372 0.85573 0.74178 1.90638 1.14436 1.87254 1.49085 1.48257 1.06592 1.05727 1.75337 1.21718 0.79955 1.01776 0.98189 1.21926 1.00346 0.95762 0.99347 1.21536 0.94125 0.97020 1.02280 1.21638 0.95791 0.94860 0.99926 0.90291 1.21433 0.91702 0.96833 1.03777 1.21526 0.96564 0.91235 1.06448 1.23648 0.79873 0.92605 0.71578 1.90718 1.63362 1.41541 1.45235 1.84576 1.25162 1.39000 1.84175 1.21709 0.98345 0.83908 0.97168 0.91730 0.96768 0.96776 0.90128 0.90148 0.89038 0.91697 0.91285 0.90653 0.91620 0.91656 0.90616 0.90703 0.87087 0.87319 0.73257 0.91957 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.83 13.65 55.43 0.76 -28.07 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 25.41 29.90 -169.99 -5.08 20.32 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.61 -17.49 9.11 -34.44 -0.31 -17.80 16 8 H 0.05 1.34 7.74 -52.48 -0.41 0.93 16 9 C 0.02 0.66 3.57 -27.88 -0.10 0.56 16 10 C -0.12 -2.49 3.99 -27.89 -0.11 -2.60 16 11 C 0.51 9.89 7.70 -10.99 -0.08 9.81 16 12 O -0.54 -12.44 15.39 5.56 0.09 -12.36 16 13 N -0.62 -8.92 2.97 -172.52 -0.51 -9.44 16 14 C 0.11 1.17 6.34 -3.71 -0.02 1.15 16 15 C -0.14 -1.20 6.08 -26.61 -0.16 -1.36 16 16 C -0.11 -0.91 5.16 -26.69 -0.14 -1.05 16 17 C -0.10 -0.95 2.35 -90.29 -0.21 -1.16 16 18 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 19 C -0.10 -0.82 3.97 -26.73 -0.11 -0.92 16 20 C -0.12 -0.98 5.58 -27.88 -0.16 -1.14 16 21 C 0.48 4.47 8.33 36.01 0.30 4.77 16 22 O -0.52 -6.26 16.74 -18.75 -0.31 -6.57 16 23 O -0.52 -3.94 13.42 -39.26 -0.53 -4.47 16 24 C 0.11 1.33 5.35 -3.50 -0.02 1.31 16 25 H 0.27 8.74 7.22 -40.82 -0.29 8.45 16 26 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 27 H 0.01 0.41 7.97 -51.93 -0.41 -0.01 16 28 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 29 H 0.08 1.53 7.94 -51.93 -0.41 1.12 16 30 H 0.09 1.03 5.93 -51.93 -0.31 0.73 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 37 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.11 0.91 6.70 -51.93 -0.35 0.56 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.41 1.39 9.10 45.56 0.41 1.81 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.24 5.73 -51.93 -0.30 0.94 16 LS Contribution 341.73 15.07 5.15 5.15 Total: -1.00 -36.70 341.73 -7.56 -44.26 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.90 Total: -0.72 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -1.22 Total: -8.10 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.24 Total: -37.51 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.76 Total: -23.40 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -5.08 Total: 20.32 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -36.70 -7.56 -44.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606286.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.632 kcal (2) G-P(sol) polarization free energy of solvation -36.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds