Wall clock time and date at job start Tue Mar 31 2020 05:37:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86797 * 119.99884 * 2 1 4 4 H 1.48502 * 109.47249 * 270.00386 * 3 2 1 5 5 H 1.48499 * 109.47418 * 30.00528 * 3 2 1 6 6 H 1.48505 * 109.47251 * 150.00313 * 3 2 1 7 7 C 1.37874 * 119.99857 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00455 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99846 * 179.97438 * 7 2 1 10 10 C 1.53003 * 109.47067 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.46931 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99808 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00023 * 180.02562 * 11 10 9 14 14 C 1.46919 * 120.63255 * 179.97438 * 13 11 10 15 15 C 1.53195 * 108.89273 * 126.34238 * 14 13 11 16 16 C 1.53346 * 109.14901 * 54.57640 * 15 14 13 17 17 C 1.53004 * 109.41904 * 178.67276 * 16 15 14 18 18 C 1.52999 * 109.47001 * 295.13027 * 17 16 15 19 19 C 1.50704 * 109.46635 * 179.97438 * 18 17 16 20 20 O 1.20818 * 120.00508 * 359.97438 * 19 18 17 21 21 O 1.34233 * 119.99832 * 180.02562 * 19 18 17 22 22 C 1.53034 * 109.61010 * 298.71225 * 16 15 14 23 23 C 1.46933 * 120.62741 * 0.02562 * 13 11 10 24 24 H 0.96996 * 119.99888 * 359.97438 * 1 2 3 25 25 H 1.08996 * 109.47219 * 59.99601 * 9 7 2 26 26 H 1.09001 * 109.47044 * 299.99568 * 9 7 2 27 27 H 1.09001 * 109.46646 * 59.99769 * 10 9 7 28 28 H 1.09001 * 109.47188 * 299.99912 * 10 9 7 29 29 H 1.09002 * 109.58751 * 246.20189 * 14 13 11 30 30 H 1.08996 * 109.58750 * 6.48373 * 14 13 11 31 31 H 1.08997 * 109.49914 * 174.65962 * 15 14 13 32 32 H 1.09002 * 109.49585 * 294.75599 * 15 14 13 33 33 H 1.09001 * 109.42242 * 58.75065 * 16 15 14 34 34 H 1.09001 * 109.46592 * 55.13132 * 17 16 15 35 35 H 1.08997 * 109.47133 * 175.12697 * 17 16 15 36 36 H 1.08991 * 109.47450 * 299.99495 * 18 17 16 37 37 H 1.08999 * 109.47142 * 60.00302 * 18 17 16 38 38 H 0.96695 * 117.00442 * 179.97438 * 21 19 18 39 39 H 1.08994 * 109.50232 * 301.42239 * 22 16 15 40 40 H 1.09007 * 109.52628 * 181.33900 * 22 16 15 41 41 H 1.08994 * 109.58580 * 353.38021 * 23 13 11 42 42 H 1.09006 * 109.57831 * 113.65514 * 23 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1940 -0.0011 10 6 4.0216 -2.6366 -0.0010 11 6 5.5286 -2.6365 -0.0022 12 8 6.1349 -1.5862 -0.0026 13 7 6.2025 -3.8037 -0.0028 14 6 7.6716 -3.8199 -0.0046 15 6 8.1596 -4.6841 1.1624 16 6 7.5126 -6.0710 1.0662 17 6 8.0214 -6.9502 2.2105 18 6 9.5234 -7.1878 2.0420 19 6 10.0245 -8.0532 3.1694 20 8 9.2591 -8.4398 4.0205 21 8 11.3216 -8.3937 3.2286 22 6 5.9914 -5.9361 1.1645 23 6 5.4818 -5.0842 -0.0029 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.8746 -0.6801 -0.8912 27 1 3.6578 -3.1505 -0.8907 28 1 3.6586 -3.1502 0.8893 29 1 8.0313 -4.2384 -0.9446 30 1 8.0484 -2.8036 0.1108 31 1 9.2442 -4.7807 1.1149 32 1 7.8765 -4.2157 2.1051 33 1 7.7757 -6.5283 0.1124 34 1 7.8369 -6.4510 3.1617 35 1 7.4982 -7.9062 2.1944 36 1 9.7078 -7.6869 1.0908 37 1 10.0465 -6.2317 2.0581 38 1 11.5961 -8.9498 3.9704 39 1 5.7288 -5.4562 2.1072 40 1 5.5343 -6.9247 1.1198 41 1 4.4138 -4.9023 0.1160 42 1 5.6614 -5.6043 -0.9439 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:25 Heat of formation + Delta-G solvation = -156.233896 kcal Electronic energy + Delta-G solvation = -22120.275079 eV Core-core repulsion = 18678.114397 eV Total energy + Delta-G solvation = -3442.160682 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.70875 -39.96845 -37.84961 -36.56617 -34.71253 -33.54496 -31.74844 -31.33442 -30.68410 -27.00887 -25.90199 -23.45014 -23.27744 -21.48795 -20.92500 -20.17659 -18.65884 -18.44071 -17.30775 -16.84304 -16.59312 -16.15922 -15.47655 -15.35285 -14.83523 -14.32335 -14.13313 -13.97624 -13.85774 -13.49312 -13.15114 -13.07128 -12.61075 -12.45559 -12.27430 -12.14925 -11.94336 -11.55712 -11.40716 -11.34060 -11.10213 -10.96881 -10.94154 -10.68256 -10.53722 -10.09391 -10.01668 -9.77061 -9.21251 -9.11810 -8.51567 -8.46454 -6.02036 -4.00637 1.80135 2.62721 3.10205 3.23173 3.38795 3.45315 3.56513 4.25946 4.41154 4.48173 4.52017 4.64455 4.76571 4.92128 4.98233 5.12696 5.15737 5.18276 5.28100 5.33506 5.42653 5.47942 5.60481 5.62979 5.72823 5.76850 5.85569 5.90779 5.96282 6.07328 6.09124 6.10544 6.20485 6.64733 6.75394 7.37846 7.44893 7.47203 7.65476 7.80752 8.50499 8.64281 9.00926 9.61173 11.10784 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036887 B = 0.002785 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.902331 B =10053.109056 C =10297.032197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.121 4.121 11 C 0.513 3.487 12 O -0.542 6.542 13 N -0.623 5.623 14 C 0.110 3.890 15 C -0.133 4.133 16 C -0.086 4.086 17 C -0.105 4.105 18 C -0.116 4.116 19 C 0.476 3.524 20 O -0.515 6.515 21 O -0.521 6.521 22 C -0.130 4.130 23 C 0.107 3.893 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.061 0.939 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.409 0.591 39 H 0.071 0.929 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.427 -18.661 2.677 28.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.161 4.161 11 C 0.303 3.697 12 O -0.418 6.418 13 N -0.359 5.359 14 C -0.013 4.013 15 C -0.171 4.171 16 C -0.105 4.105 17 C -0.142 4.142 18 C -0.153 4.153 19 C 0.319 3.681 20 O -0.403 6.403 21 O -0.333 6.333 22 C -0.168 4.168 23 C -0.016 4.016 24 H 0.073 0.927 25 H 0.041 0.959 26 H 0.037 0.963 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.268 0.732 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 21.247 -17.810 2.580 27.844 hybrid contribution 0.582 0.335 0.516 0.847 sum 21.829 -17.475 3.096 28.133 Atomic orbital electron populations 1.69914 1.06279 1.26950 1.51125 1.24974 0.94714 0.99234 0.94353 0.86794 0.80622 0.83394 0.78735 1.20251 1.21459 1.18539 1.21112 0.89274 0.94542 1.51268 0.90946 1.19378 0.96398 0.90269 0.97617 1.21683 0.88166 1.03144 1.03072 1.21546 0.91591 0.82380 0.74144 1.90634 1.70725 1.31105 1.49335 1.48256 1.06123 1.06292 1.75207 1.21469 0.80764 1.01623 0.97446 1.22120 0.99991 0.95241 0.99723 1.21214 0.95573 0.95218 0.98455 1.21511 0.92017 1.00968 0.99727 1.21499 0.98184 0.99794 0.95842 1.23690 0.79458 0.78428 0.86547 1.90743 1.56861 1.52450 1.40277 1.84548 1.28625 1.66817 1.53290 1.21973 0.94862 1.00417 0.99596 1.21730 0.97793 0.83986 0.98060 0.92736 0.95879 0.96311 0.89703 0.89650 0.92094 0.89165 0.90884 0.91261 0.90662 0.90766 0.90754 0.87537 0.87343 0.73185 0.91058 0.90530 0.88797 0.91611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.10 13.96 55.43 0.77 -27.33 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 4 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 7 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.37 3.99 -27.88 -0.11 -2.48 16 11 C 0.51 9.51 7.70 -10.99 -0.08 9.43 16 12 O -0.54 -12.13 15.39 5.56 0.09 -12.04 16 13 N -0.62 -8.53 2.97 -172.74 -0.51 -9.04 16 14 C 0.11 1.25 6.42 -3.71 -0.02 1.22 16 15 C -0.13 -1.12 5.16 -26.45 -0.14 -1.25 16 16 C -0.09 -0.62 2.15 -90.42 -0.19 -0.81 16 17 C -0.10 -0.72 3.97 -26.73 -0.11 -0.83 16 18 C -0.12 -0.64 5.57 -27.88 -0.16 -0.79 16 19 C 0.48 3.60 8.33 36.01 0.30 3.90 16 20 O -0.52 -5.74 16.74 -18.74 -0.31 -6.05 16 21 O -0.52 -2.91 13.42 -39.27 -0.53 -3.44 16 22 C -0.13 -1.10 5.37 -26.59 -0.14 -1.25 16 23 C 0.11 1.11 6.34 -3.68 -0.02 1.09 16 24 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 25 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 26 H 0.02 0.49 7.53 -51.93 -0.39 0.09 16 27 H 0.08 1.53 7.94 -51.93 -0.41 1.12 16 28 H 0.09 1.55 7.69 -51.93 -0.40 1.15 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.09 1.22 7.00 -51.93 -0.36 0.86 16 31 H 0.07 0.46 6.52 -51.93 -0.34 0.12 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 35 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.11 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 0.49 6.53 -51.93 -0.34 0.15 16 38 H 0.41 0.74 9.10 45.56 0.41 1.16 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.53 8.14 -51.92 -0.42 0.11 16 41 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 339.07 15.07 5.11 5.11 Total: -1.00 -36.78 339.07 -7.15 -43.93 By element: Atomic # 1 Polarization: 1.95 SS G_CDS: -5.90 Total: -3.95 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.20 Total: -5.27 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.26 Total: -36.37 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.76 Total: -21.53 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -36.78 -7.15 -43.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.300 kcal (2) G-P(sol) polarization free energy of solvation -36.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds