Wall clock time and date at job start Tue Mar 31 2020 05:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86792 * 120.00199 * 2 1 4 4 H 1.48504 * 109.47127 * 239.99752 * 3 2 1 5 5 H 1.48498 * 109.47399 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47355 * 119.99920 * 3 2 1 7 7 C 1.37883 * 119.99813 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00090 * 157.09592 * 7 2 1 9 9 C 1.50701 * 119.99843 * 337.10466 * 7 2 1 10 10 C 1.52998 * 115.54852 * 325.20139 * 9 7 2 11 11 N 1.46897 * 109.47512 * 301.06090 * 10 9 7 12 12 C 1.46900 * 111.00396 * 175.46007 * 11 10 9 13 13 C 1.50695 * 109.47133 * 287.60632 * 12 11 10 14 14 O 1.20825 * 120.00372 * 354.30770 * 13 12 11 15 15 O 1.34233 * 119.99833 * 174.03610 * 13 12 11 16 16 C 1.46902 * 111.00416 * 299.41843 * 11 10 9 17 17 C 1.53169 * 109.54137 * 294.82392 * 16 11 10 18 18 C 1.53110 * 109.15995 * 183.23892 * 17 16 11 19 19 O 1.42911 * 109.48379 * 57.46711 * 18 17 16 20 20 C 1.42896 * 114.09880 * 298.89486 * 19 18 17 21 21 C 1.53095 * 109.41714 * 61.15815 * 20 19 18 22 22 C 1.52996 * 117.50112 * 110.87849 * 9 7 2 23 23 C 1.52998 * 117.49574 * 179.54002 * 9 7 2 24 24 H 0.97003 * 120.00311 * 5.43718 * 1 2 3 25 25 H 1.08999 * 109.46989 * 181.06621 * 10 9 7 26 26 H 1.08996 * 109.47136 * 61.06255 * 10 9 7 27 27 H 1.08992 * 109.47407 * 167.59992 * 12 11 10 28 28 H 1.09006 * 109.46414 * 47.60261 * 12 11 10 29 29 H 0.96700 * 116.99727 * 179.97438 * 15 13 12 30 30 H 1.09008 * 109.53820 * 54.99852 * 16 11 10 31 31 H 1.08998 * 109.52373 * 303.05264 * 17 16 11 32 32 H 1.08998 * 109.52884 * 63.24043 * 17 16 11 33 33 H 1.09005 * 109.40197 * 297.49678 * 18 17 16 34 34 H 1.08999 * 109.48662 * 177.49889 * 18 17 16 35 35 H 1.09005 * 109.48283 * 301.17000 * 20 19 18 36 36 H 1.09001 * 109.48848 * 181.14600 * 20 19 18 37 37 H 1.08997 * 109.51837 * 182.48542 * 21 20 19 38 38 H 1.09000 * 109.57389 * 62.32949 * 21 20 19 39 39 H 1.08996 * 117.49724 * 214.99397 * 22 9 7 40 40 H 1.08999 * 117.49877 * 0.02562 * 22 9 7 41 41 H 1.09008 * 117.50028 * 359.97135 * 23 9 7 42 42 H 1.09002 * 117.50161 * 144.96883 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0206 -1.2312 -0.3635 9 6 1.3399 -2.4475 0.5089 10 6 0.3715 -2.2536 1.6773 11 7 1.0859 -1.6515 2.8108 12 6 0.1642 -1.3510 3.9145 13 6 -0.6961 -0.1707 3.5433 14 8 -0.4879 0.4291 2.5153 15 8 -1.6971 0.2109 4.3520 16 6 2.1828 -2.5182 3.2622 17 6 1.6077 -3.8227 3.8223 18 6 2.7516 -4.6845 4.3638 19 8 3.4691 -3.9530 5.3601 20 6 4.0691 -2.7482 4.8803 21 6 2.9780 -1.8077 4.3617 22 6 1.0035 -3.5337 -0.5148 23 6 2.1538 -3.7427 0.4734 24 1 -0.4851 0.8363 -0.0796 25 1 -0.0354 -3.2196 1.9761 26 1 -0.4417 -1.5961 1.3698 27 1 0.7363 -1.1157 4.8119 28 1 -0.4697 -2.2172 4.1045 29 1 -2.2213 0.9737 4.0719 30 1 2.8408 -2.7408 2.4221 31 1 0.9104 -3.5966 4.6290 32 1 1.0875 -4.3613 3.0303 33 1 3.4260 -4.9451 3.5481 34 1 2.3442 -5.5946 4.8039 35 1 4.7608 -2.9835 4.0714 36 1 4.6110 -2.2634 5.6924 37 1 3.4370 -0.9067 3.9550 38 1 2.3091 -1.5386 5.1791 39 1 0.0922 -4.1102 -0.3558 40 1 1.2632 -3.3419 -1.5559 41 1 3.1697 -3.6882 0.0820 42 1 1.9994 -4.4564 1.2827 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606609.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:46 Heat of formation + Delta-G solvation = -85.684905 kcal Electronic energy + Delta-G solvation = -24829.125488 eV Core-core repulsion = 21390.024040 eV Total energy + Delta-G solvation = -3439.101448 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.00963 -39.07526 -37.28625 -35.48601 -34.99710 -31.91886 -31.37370 -30.89843 -27.93382 -25.53752 -24.99901 -23.32073 -22.54629 -21.48907 -20.77594 -19.23696 -18.53670 -17.42053 -16.53495 -16.01491 -15.90508 -15.67732 -15.07781 -14.60042 -14.43325 -14.13731 -13.83903 -13.72994 -13.62845 -13.18180 -12.63103 -12.48918 -12.11254 -11.87836 -11.38743 -11.22070 -10.99612 -10.97928 -10.73614 -10.62464 -10.55485 -10.41336 -10.33557 -10.00404 -9.89652 -9.59812 -9.44338 -9.13828 -8.98712 -8.45715 -7.73750 -7.39554 -5.81802 -3.70319 3.00649 3.46993 3.49875 3.55891 3.59171 4.02633 4.58451 4.65080 5.04832 5.09996 5.20510 5.23343 5.38138 5.45275 5.48447 5.62964 5.71803 5.74132 5.79779 5.85592 5.92906 6.03992 6.09473 6.15694 6.25088 6.31170 6.47105 6.60158 6.64431 6.70755 6.74652 7.00833 7.11930 7.16147 7.33997 7.39222 7.60236 7.90706 8.00850 8.19462 8.66144 8.69366 9.16016 9.86211 11.25453 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013816 B = 0.008447 C = 0.007052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.159348 B = 3313.943809 C = 3969.477292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.110 3.890 3 Si 0.885 3.115 4 H -0.289 1.289 5 H -0.294 1.294 6 H -0.278 1.278 7 C -0.508 4.508 8 H 0.051 0.949 9 C 0.080 3.920 10 C 0.093 3.907 11 N -0.484 5.484 12 C 0.062 3.938 13 C 0.447 3.553 14 O -0.435 6.435 15 O -0.539 6.539 16 C 0.088 3.912 17 C -0.193 4.193 18 C 0.068 3.932 19 O -0.389 6.389 20 C 0.063 3.937 21 C -0.152 4.152 22 C -0.208 4.208 23 C -0.224 4.224 24 H 0.261 0.739 25 H -0.007 1.007 26 H 0.119 0.881 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.401 0.599 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.051 0.949 34 H 0.086 0.914 35 H 0.052 0.948 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 -4.724 10.355 11.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.098 4.098 3 Si 0.714 3.286 4 H -0.216 1.216 5 H -0.220 1.220 6 H -0.204 1.204 7 C -0.544 4.544 8 H 0.069 0.931 9 C 0.079 3.921 10 C -0.034 4.034 11 N -0.206 5.206 12 C -0.067 4.067 13 C 0.284 3.716 14 O -0.315 6.315 15 O -0.352 6.352 16 C -0.021 4.021 17 C -0.233 4.233 18 C -0.010 4.010 19 O -0.308 6.308 20 C -0.014 4.014 21 C -0.190 4.190 22 C -0.247 4.247 23 C -0.262 4.262 24 H 0.071 0.929 25 H 0.011 0.989 26 H 0.136 0.864 27 H 0.122 0.878 28 H 0.077 0.923 29 H 0.258 0.742 30 H 0.127 0.873 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.070 0.930 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.101 -4.341 10.238 11.175 hybrid contribution -0.349 0.645 -0.252 0.775 sum 0.753 -3.696 9.986 10.675 Atomic orbital electron populations 1.69714 1.06256 1.26884 1.44031 1.24548 0.94141 0.98006 0.93130 0.86817 0.79769 0.84212 0.77758 1.21566 1.22015 1.20382 1.19975 0.98804 0.90711 1.44910 0.93054 1.18760 0.93728 0.87554 0.92065 1.21900 0.98148 0.94821 0.88487 1.61676 1.09382 1.45271 1.04301 1.21501 0.94679 0.93520 0.97027 1.23534 0.79421 0.86565 0.82107 1.90965 1.66300 1.51909 1.22375 1.84492 1.45146 1.51482 1.54095 1.21853 0.93981 0.88854 0.97367 1.22993 0.99408 0.99603 1.01270 1.22471 0.92973 0.94064 0.91457 1.87865 1.70063 1.36362 1.36482 1.22571 0.94518 0.85075 0.99219 1.22350 0.98372 0.99790 0.98488 1.23003 0.96728 1.08295 0.96682 1.23048 0.95821 1.04845 1.02462 0.92928 0.98927 0.86353 0.87767 0.92339 0.74199 0.87299 0.91616 0.90445 0.93109 0.89551 0.93017 0.89195 0.89791 0.91621 0.92361 0.90492 0.90976 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.28 9.17 55.43 0.51 -22.78 16 2 C 0.11 3.02 4.94 -17.82 -0.09 2.93 16 3 Si 0.89 22.34 29.60 -169.99 -5.03 17.31 16 4 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 6 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.51 -13.72 8.75 -34.44 -0.30 -14.02 16 8 H 0.05 1.42 7.92 -52.49 -0.42 1.01 16 9 C 0.08 1.90 1.28 -155.66 -0.20 1.70 16 10 C 0.09 2.06 3.70 -3.83 -0.01 2.05 16 11 N -0.48 -9.59 3.91 -227.88 -0.89 -10.48 16 12 C 0.06 1.06 4.47 -4.98 -0.02 1.03 16 13 C 0.45 8.28 7.91 36.00 0.28 8.57 16 14 O -0.44 -10.01 13.66 -18.75 -0.26 -10.26 16 15 O -0.54 -7.95 13.42 -39.27 -0.53 -8.48 16 16 C 0.09 1.50 1.80 -67.54 -0.12 1.38 16 17 C -0.19 -2.84 4.34 -26.59 -0.12 -2.96 16 18 C 0.07 0.89 6.84 37.21 0.25 1.15 16 19 O -0.39 -5.52 10.77 -35.23 -0.38 -5.90 16 20 C 0.06 0.83 6.84 37.21 0.25 1.08 16 21 C -0.15 -2.27 5.35 -26.59 -0.14 -2.42 16 22 C -0.21 -4.72 9.95 -26.69 -0.27 -4.98 16 23 C -0.22 -4.67 7.86 -26.69 -0.21 -4.88 16 24 H 0.26 7.25 8.29 -40.82 -0.34 6.92 16 25 H -0.01 -0.15 6.46 -51.93 -0.34 -0.49 16 26 H 0.12 3.03 4.64 -51.93 -0.24 2.79 16 27 H 0.10 1.57 5.61 -51.93 -0.29 1.27 16 28 H 0.06 0.92 7.10 -51.93 -0.37 0.55 16 29 H 0.40 4.40 9.10 45.56 0.41 4.82 16 30 H 0.11 2.11 5.47 -51.92 -0.28 1.82 16 31 H 0.07 0.93 6.62 -51.93 -0.34 0.59 16 32 H 0.08 1.21 5.33 -51.93 -0.28 0.93 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 38 H 0.07 0.93 5.98 -51.93 -0.31 0.62 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 41 H 0.07 1.51 8.14 -51.92 -0.42 1.09 16 42 H 0.06 1.19 6.11 -51.93 -0.32 0.88 16 LS Contribution 319.64 15.07 4.82 4.82 Total: -1.00 -30.47 319.64 -7.73 -38.20 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -5.29 Total: 6.93 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.69 Total: -9.37 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: -0.38 Total: -33.25 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: -1.16 Total: -24.64 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.03 Total: 17.31 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.47 -7.73 -38.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606609.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.481 kcal (2) G-P(sol) polarization free energy of solvation -30.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds