Wall clock time and date at job start Tue Mar 31 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47268 * 240.00030 * 3 2 1 5 5 H 1.48498 * 109.47194 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46861 * 120.00297 * 3 2 1 7 7 C 1.37882 * 119.99447 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99640 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00307 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.50165 * 59.93071 * 9 7 2 11 11 C 1.53043 * 109.52377 * 299.85166 * 9 7 2 12 12 C 1.53041 * 109.54163 * 178.66618 * 11 9 7 13 13 C 1.52758 * 109.37899 * 61.23851 * 12 11 9 14 14 N 1.46921 * 109.01370 * 305.59025 * 13 12 11 15 15 C 1.34777 * 120.63534 * 233.58237 * 14 13 12 16 16 O 1.21282 * 120.00346 * 179.71517 * 15 14 13 17 17 C 1.50699 * 119.99614 * 359.72117 * 15 14 13 18 18 C 1.53006 * 109.47240 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.46997 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.46623 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46866 * 179.97438 * 20 19 18 22 22 O 1.20828 * 120.00000 * 359.97438 * 21 20 19 23 23 O 1.34231 * 120.00150 * 180.02562 * 21 20 19 24 24 C 1.46934 * 118.73770 * 53.30888 * 14 13 12 25 25 H 0.97001 * 119.99187 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46207 * 298.69266 * 11 9 7 27 27 H 1.09007 * 109.45496 * 58.64851 * 11 9 7 28 28 H 1.08995 * 109.50127 * 181.31698 * 12 11 9 29 29 H 1.09005 * 109.49680 * 301.41953 * 12 11 9 30 30 H 1.09002 * 109.51066 * 185.70881 * 13 12 11 31 31 H 1.09001 * 109.42896 * 65.42957 * 13 12 11 32 32 H 1.09000 * 109.47247 * 59.99885 * 17 15 14 33 33 H 1.08996 * 109.47258 * 300.00046 * 17 15 14 34 34 H 1.09000 * 109.46866 * 59.99931 * 18 17 15 35 35 H 1.09001 * 109.46611 * 300.00048 * 18 17 15 36 36 H 1.09000 * 109.47486 * 60.00167 * 19 18 17 37 37 H 1.09001 * 109.47362 * 299.99445 * 19 18 17 38 38 H 1.08993 * 109.46955 * 300.00075 * 20 19 18 39 39 H 1.09000 * 109.47050 * 59.99904 * 20 19 18 40 40 H 0.96691 * 116.99938 * 180.02562 * 23 21 20 41 41 H 1.08997 * 109.58169 * 66.43254 * 24 14 13 42 42 H 1.08992 * 109.58557 * 186.85521 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6229 -2.5567 -0.8895 11 6 0.3739 -2.5834 1.2508 12 6 -0.4166 -3.8937 1.2347 13 6 0.5553 -5.0722 1.2447 14 7 1.4999 -4.9232 0.1294 15 6 1.6748 -5.9202 -0.7604 16 8 2.4537 -5.7829 -1.6798 17 6 0.9022 -7.2057 -0.6130 18 6 1.2833 -8.1625 -1.7446 19 6 0.4984 -9.4673 -1.5952 20 6 0.8791 -10.4238 -2.7272 21 6 0.1065 -11.7092 -2.5797 22 8 -0.6686 -11.8465 -1.6630 23 8 0.2802 -12.7021 -3.4661 24 6 2.2459 -3.6640 -0.0012 25 1 -0.4849 0.8401 0.0004 26 1 1.0047 -2.5507 2.1392 27 1 -0.3185 -1.7416 1.2662 28 1 -1.0584 -3.9423 2.1143 29 1 -1.0290 -3.9380 0.3340 30 1 -0.0002 -6.0031 1.1311 31 1 1.1020 -5.0833 2.1876 32 1 -0.1662 -6.9950 -0.6602 33 1 1.1400 -7.6645 0.3467 34 1 2.3517 -8.3732 -1.6978 35 1 1.0451 -7.7034 -2.7041 36 1 -0.5699 -9.2562 -1.6422 37 1 0.7362 -9.9265 -0.6356 38 1 0.6410 -9.9643 -3.6864 39 1 1.9474 -10.6349 -2.6806 40 1 -0.2376 -13.5073 -3.3304 41 1 2.9333 -3.5580 0.8380 42 1 2.8054 -3.6662 -0.9365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:51 Heat of formation + Delta-G solvation = -159.053610 kcal Electronic energy + Delta-G solvation = -22103.297351 eV Core-core repulsion = 18661.014397 eV Total energy + Delta-G solvation = -3442.282954 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.54982 -39.65188 -36.97092 -36.55411 -35.26369 -33.50332 -31.51318 -31.15386 -30.01717 -26.47302 -25.04808 -24.19895 -22.17869 -21.63872 -20.87688 -19.71640 -18.36383 -18.19048 -16.84823 -16.68719 -16.63903 -16.10473 -15.61813 -15.19583 -14.66138 -14.35033 -13.71010 -13.57102 -13.38835 -13.19428 -12.81331 -12.70747 -12.36949 -12.09097 -12.03570 -11.85547 -11.73911 -11.48107 -11.30424 -10.96575 -10.87657 -10.82840 -10.74320 -10.71746 -10.29530 -9.96214 -9.80631 -9.47389 -9.24813 -8.83336 -8.38878 -7.88657 -6.02490 -4.09599 1.89498 2.72079 3.07908 3.31029 3.35432 3.38127 3.57666 4.41884 4.47255 4.67818 4.69468 4.93119 5.11800 5.15191 5.26330 5.34512 5.35764 5.50523 5.55252 5.64566 5.67736 5.78374 5.81207 6.10817 6.12760 6.16413 6.27686 6.33170 6.40602 6.48314 6.66405 6.81123 6.98065 7.16610 7.33082 7.56321 7.68301 7.91587 8.03415 8.07034 8.37129 8.67215 8.93995 9.55214 11.03073 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.039240 B = 0.002736 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.394942 B =10231.992941 C =10556.800580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.040 3.960 10 H 0.029 0.971 11 C -0.113 4.113 12 C -0.136 4.136 13 C 0.109 3.891 14 N -0.604 5.604 15 C 0.507 3.493 16 O -0.554 6.554 17 C -0.139 4.139 18 C -0.103 4.103 19 C -0.110 4.110 20 C -0.114 4.114 21 C 0.477 3.523 22 O -0.517 6.517 23 O -0.520 6.520 24 C 0.116 3.884 25 H 0.261 0.739 26 H 0.035 0.965 27 H 0.095 0.905 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.409 0.591 41 H 0.054 0.946 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.279 -20.305 -1.263 20.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.047 0.953 11 C -0.151 4.151 12 C -0.174 4.174 13 C -0.014 4.014 14 N -0.337 5.337 15 C 0.295 3.705 16 O -0.433 6.433 17 C -0.179 4.179 18 C -0.141 4.141 19 C -0.148 4.148 20 C -0.152 4.152 21 C 0.320 3.680 22 O -0.405 6.405 23 O -0.332 6.332 24 C -0.005 4.005 25 H 0.071 0.929 26 H 0.054 0.946 27 H 0.113 0.887 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.267 0.733 41 H 0.072 0.928 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.000 -19.768 -1.542 19.853 hybrid contribution -0.055 0.414 0.246 0.484 sum -1.055 -19.354 -1.296 19.426 Atomic orbital electron populations 1.69870 1.05897 1.26585 1.50467 1.24944 0.94869 0.99091 0.94941 0.86633 0.79582 0.82970 0.78675 1.20215 1.21315 1.20260 1.21044 0.92955 0.90316 1.51000 0.92542 1.18964 0.92969 0.91201 0.94765 0.95307 1.21633 0.99455 0.95396 0.98593 1.21932 0.97722 0.96765 1.00989 1.21655 0.91358 0.99088 0.89291 1.48334 1.41988 1.16200 1.27132 1.20559 0.82956 0.85164 0.81842 1.90652 1.38235 1.81807 1.32629 1.21664 1.01321 0.94082 1.00848 1.21323 1.00606 0.93282 0.98903 1.21488 1.01370 0.94433 0.97492 1.21430 1.01137 0.89621 1.02978 1.23715 0.80377 0.85434 0.78467 1.90733 1.35771 1.81310 1.32688 1.84557 1.66550 1.27941 1.54179 1.21981 0.95083 0.81999 1.01394 0.92921 0.94595 0.88670 0.92427 0.92411 0.91033 0.92006 0.89042 0.89248 0.90941 0.90822 0.90844 0.90925 0.87349 0.87416 0.73283 0.92811 0.90348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.96 11.33 55.43 0.63 -24.33 16 2 C 0.06 1.72 5.30 -17.81 -0.09 1.62 16 3 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.93 8.56 -34.44 -0.29 -14.23 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.98 2.25 -91.65 -0.21 0.78 16 10 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 11 C -0.11 -2.51 4.96 -26.69 -0.13 -2.65 16 12 C -0.14 -2.38 6.07 -26.83 -0.16 -2.54 16 13 C 0.11 1.65 6.31 -3.94 -0.02 1.63 16 14 N -0.60 -11.01 2.98 -173.04 -0.52 -11.52 16 15 C 0.51 8.80 7.70 -10.99 -0.08 8.72 16 16 O -0.55 -11.57 15.40 5.56 0.09 -11.49 16 17 C -0.14 -1.67 4.05 -27.88 -0.11 -1.78 16 18 C -0.10 -1.10 4.50 -26.73 -0.12 -1.22 16 19 C -0.11 -0.95 4.51 -26.73 -0.12 -1.07 16 20 C -0.11 -0.82 5.81 -27.88 -0.16 -0.98 16 21 C 0.48 4.13 8.33 36.01 0.30 4.43 16 22 O -0.52 -6.17 16.74 -18.75 -0.31 -6.48 16 23 O -0.52 -3.40 13.42 -39.26 -0.53 -3.93 16 24 C 0.12 2.52 5.66 -3.71 -0.02 2.50 16 25 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 2.41 6.05 -51.92 -0.31 2.10 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.85 5.93 -51.93 -0.31 0.54 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 32 H 0.09 1.00 7.68 -51.93 -0.40 0.60 16 33 H 0.09 0.90 7.95 -51.93 -0.41 0.49 16 34 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 35 H 0.07 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 37 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.41 1.05 9.10 45.56 0.41 1.46 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.08 1.83 7.00 -51.93 -0.36 1.46 16 LS Contribution 342.04 15.07 5.15 5.15 Total: -1.00 -32.94 342.04 -7.74 -40.68 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -5.99 Total: 0.64 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -1.24 Total: -4.79 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.11 Total: -35.85 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.76 Total: -21.90 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.94 -7.74 -40.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.378 kcal (2) G-P(sol) polarization free energy of solvation -32.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds