Wall clock time and date at job start Tue Mar 31 2020 05:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47268 * 240.00030 * 3 2 1 5 5 H 1.48498 * 109.47194 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46861 * 120.00297 * 3 2 1 7 7 C 1.37882 * 119.99447 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99640 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00307 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.50165 * 59.93071 * 9 7 2 11 11 C 1.53043 * 109.52377 * 299.85166 * 9 7 2 12 12 C 1.53041 * 109.54163 * 178.66618 * 11 9 7 13 13 C 1.52758 * 109.37899 * 61.23851 * 12 11 9 14 14 N 1.46921 * 109.01370 * 305.59025 * 13 12 11 15 15 C 1.34777 * 120.63534 * 233.58237 * 14 13 12 16 16 O 1.21282 * 120.00346 * 179.71517 * 15 14 13 17 17 C 1.50699 * 119.99614 * 359.72117 * 15 14 13 18 18 C 1.53006 * 109.47240 * 179.97438 * 17 15 14 19 19 C 1.52999 * 109.46997 * 180.02562 * 18 17 15 20 20 C 1.53006 * 109.46623 * 179.97438 * 19 18 17 21 21 C 1.50699 * 109.46866 * 179.97438 * 20 19 18 22 22 O 1.20828 * 120.00000 * 359.97438 * 21 20 19 23 23 O 1.34231 * 120.00150 * 180.02562 * 21 20 19 24 24 C 1.46934 * 118.73770 * 53.30888 * 14 13 12 25 25 H 0.97001 * 119.99187 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.46207 * 298.69266 * 11 9 7 27 27 H 1.09007 * 109.45496 * 58.64851 * 11 9 7 28 28 H 1.08995 * 109.50127 * 181.31698 * 12 11 9 29 29 H 1.09005 * 109.49680 * 301.41953 * 12 11 9 30 30 H 1.09002 * 109.51066 * 185.70881 * 13 12 11 31 31 H 1.09001 * 109.42896 * 65.42957 * 13 12 11 32 32 H 1.09000 * 109.47247 * 59.99885 * 17 15 14 33 33 H 1.08996 * 109.47258 * 300.00046 * 17 15 14 34 34 H 1.09000 * 109.46866 * 59.99931 * 18 17 15 35 35 H 1.09001 * 109.46611 * 300.00048 * 18 17 15 36 36 H 1.09000 * 109.47486 * 60.00167 * 19 18 17 37 37 H 1.09001 * 109.47362 * 299.99445 * 19 18 17 38 38 H 1.08993 * 109.46955 * 300.00075 * 20 19 18 39 39 H 1.09000 * 109.47050 * 59.99904 * 20 19 18 40 40 H 0.96691 * 116.99938 * 180.02562 * 23 21 20 41 41 H 1.08997 * 109.58169 * 66.43254 * 24 14 13 42 42 H 1.08992 * 109.58557 * 186.85521 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6229 -2.5567 -0.8895 11 6 0.3739 -2.5834 1.2508 12 6 -0.4166 -3.8937 1.2347 13 6 0.5553 -5.0722 1.2447 14 7 1.4999 -4.9232 0.1294 15 6 1.6748 -5.9202 -0.7604 16 8 2.4537 -5.7829 -1.6798 17 6 0.9022 -7.2057 -0.6130 18 6 1.2833 -8.1625 -1.7446 19 6 0.4984 -9.4673 -1.5952 20 6 0.8791 -10.4238 -2.7272 21 6 0.1065 -11.7092 -2.5797 22 8 -0.6686 -11.8465 -1.6630 23 8 0.2802 -12.7021 -3.4661 24 6 2.2459 -3.6640 -0.0012 25 1 -0.4849 0.8401 0.0004 26 1 1.0047 -2.5507 2.1392 27 1 -0.3185 -1.7416 1.2662 28 1 -1.0584 -3.9423 2.1143 29 1 -1.0290 -3.9380 0.3340 30 1 -0.0002 -6.0031 1.1311 31 1 1.1020 -5.0833 2.1876 32 1 -0.1662 -6.9950 -0.6602 33 1 1.1400 -7.6645 0.3467 34 1 2.3517 -8.3732 -1.6978 35 1 1.0451 -7.7034 -2.7041 36 1 -0.5699 -9.2562 -1.6422 37 1 0.7362 -9.9265 -0.6356 38 1 0.6410 -9.9643 -3.6864 39 1 1.9474 -10.6349 -2.6806 40 1 -0.2376 -13.5073 -3.3304 41 1 2.9333 -3.5580 0.8380 42 1 2.8054 -3.6662 -0.9365 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606658.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:51 Heat of formation + Delta-G solvation = -180.401462 kcal Electronic energy + Delta-G solvation = -22104.223063 eV Core-core repulsion = 18661.014397 eV Total energy + Delta-G solvation = -3443.208666 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23421 -41.03005 -38.47120 -37.21413 -36.11518 -35.34941 -33.10883 -32.38149 -31.46085 -27.64311 -26.80225 -25.55219 -23.39867 -22.94517 -21.54002 -21.29304 -19.65198 -19.00103 -18.50193 -17.78067 -17.36393 -17.33893 -16.76229 -16.58834 -16.42884 -15.47211 -15.08368 -14.92676 -14.66309 -14.40991 -14.16543 -14.02431 -13.59700 -13.43459 -13.31682 -12.87187 -12.74164 -12.68823 -12.52163 -12.49968 -12.25378 -12.11104 -11.85661 -11.82513 -11.59030 -11.55853 -11.48694 -11.25076 -10.86065 -10.62685 -10.41998 -9.44764 -8.11089 -6.26359 1.26299 1.41005 1.42428 1.49924 1.73566 2.11412 2.28988 2.44420 3.15245 3.63444 3.80096 4.03581 4.11424 4.18016 4.27861 4.36049 4.37854 4.50061 4.57127 4.61787 4.69738 4.78684 4.81661 4.84326 4.89291 4.91516 5.01247 5.08424 5.13815 5.30736 5.32793 5.46472 5.50584 5.59793 5.61194 5.68111 5.93490 6.13954 6.34622 6.63787 6.83395 7.04027 7.29608 7.41722 8.92405 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.039240 B = 0.002736 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.394942 B =10231.992941 C =10556.800580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.016 3.984 3 Si 0.955 3.045 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.539 4.539 8 H 0.052 0.948 9 C 0.041 3.959 10 H -0.015 1.015 11 C -0.107 4.107 12 C -0.129 4.129 13 C 0.110 3.890 14 N -0.611 5.611 15 C 0.499 3.501 16 O -0.598 6.598 17 C -0.131 4.131 18 C -0.098 4.098 19 C -0.100 4.100 20 C -0.115 4.115 21 C 0.483 3.517 22 O -0.555 6.555 23 O -0.517 6.517 24 C 0.129 3.871 25 H 0.262 0.738 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.044 0.956 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.426 0.574 41 H 0.059 0.941 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 -22.120 -0.291 22.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.183 4.183 3 Si 0.781 3.219 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.578 4.578 8 H 0.070 0.930 9 C 0.022 3.978 10 H 0.003 0.997 11 C -0.145 4.145 12 C -0.167 4.167 13 C -0.012 4.012 14 N -0.343 5.343 15 C 0.289 3.711 16 O -0.479 6.479 17 C -0.170 4.170 18 C -0.136 4.136 19 C -0.138 4.138 20 C -0.152 4.152 21 C 0.328 3.672 22 O -0.446 6.446 23 O -0.331 6.331 24 C 0.007 3.993 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.079 0.921 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.135 0.865 31 H 0.098 0.902 32 H 0.128 0.872 33 H 0.139 0.861 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.094 0.906 38 H 0.138 0.862 39 H 0.142 0.858 40 H 0.287 0.713 41 H 0.077 0.923 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.187 -21.623 -0.567 21.663 hybrid contribution 0.007 0.957 -0.127 0.966 sum -1.179 -20.665 -0.695 20.711 Atomic orbital electron populations 1.70010 1.07099 1.27275 1.50884 1.25707 0.95718 1.02314 0.94585 0.85658 0.78440 0.79006 0.78836 1.20113 1.20759 1.19273 1.21428 0.93063 0.91993 1.51282 0.93005 1.18870 0.93183 0.91704 0.94075 0.99659 1.21434 0.98774 0.97203 0.97112 1.21846 0.97927 0.95047 1.01870 1.21897 0.90642 0.99769 0.88879 1.48433 1.42335 1.15033 1.28467 1.21602 0.82535 0.86394 0.80546 1.90630 1.40246 1.82786 1.34285 1.21745 1.01242 0.91105 1.02907 1.21254 1.00636 0.93873 0.97792 1.21348 1.00706 0.93504 0.98245 1.21466 1.01885 0.88892 1.02985 1.23885 0.79567 0.85914 0.77852 1.90723 1.37501 1.82087 1.34261 1.84521 1.66682 1.28524 1.53369 1.21504 0.94496 0.83153 1.00183 0.92928 0.94499 0.92074 0.89238 0.93711 0.86503 0.90158 0.87193 0.86144 0.91445 0.92214 0.91148 0.90614 0.86200 0.85844 0.71291 0.92306 0.93050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.67 11.33 21.45 0.24 -52.42 16 2 C 0.02 0.88 5.30 84.65 0.45 1.33 16 3 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 4 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 7 C -0.54 -30.17 8.56 25.60 0.22 -29.95 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.04 2.08 2.25 -11.46 -0.03 2.06 16 10 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 11 C -0.11 -4.82 4.96 30.62 0.15 -4.67 16 12 C -0.13 -4.28 6.07 30.53 0.19 -4.10 16 13 C 0.11 2.96 6.31 86.22 0.54 3.51 16 14 N -0.61 -21.62 2.98 -819.75 -2.44 -24.06 16 15 C 0.50 16.78 7.70 87.66 0.67 17.45 16 16 O -0.60 -25.28 15.40 -3.04 -0.05 -25.33 16 17 C -0.13 -2.73 4.05 29.85 0.12 -2.61 16 18 C -0.10 -1.87 4.50 30.60 0.14 -1.73 16 19 C -0.10 -1.48 4.51 30.60 0.14 -1.34 16 20 C -0.12 -1.39 5.81 29.85 0.17 -1.22 16 21 C 0.48 7.40 8.33 71.24 0.59 8.00 16 22 O -0.55 -12.37 16.74 21.96 0.37 -12.00 16 23 O -0.52 -5.65 13.42 -51.43 -0.69 -6.34 16 24 C 0.13 5.73 5.66 86.36 0.49 6.22 16 25 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 26 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 3.17 6.05 -2.38 -0.01 3.16 16 28 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.12 2.16 5.93 -2.39 -0.01 2.15 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.11 1.97 7.68 -2.39 -0.02 1.95 16 33 H 0.12 1.85 7.95 -2.39 -0.02 1.83 16 34 H 0.07 1.37 8.10 -2.39 -0.02 1.35 16 35 H 0.06 1.32 8.10 -2.39 -0.02 1.30 16 36 H 0.07 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.08 1.10 8.10 -2.39 -0.02 1.08 16 38 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.43 1.31 9.10 -74.06 -0.67 0.64 16 41 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.05 2.51 7.00 -2.39 -0.02 2.49 16 Total: -1.00 -75.00 342.04 3.65 -71.36 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.34 Total: 9.98 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 3.85 Total: -7.07 kcal Atomic # 7 Polarization: -74.29 SS G_CDS: -2.20 Total: -76.49 kcal Atomic # 8 Polarization: -43.30 SS G_CDS: -0.37 Total: -43.67 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -75.00 3.65 -71.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606658.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.045 kcal (2) G-P(sol) polarization free energy of solvation -75.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds