Wall clock time and date at job start Tue Mar 31 2020 05:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99862 * 2 1 4 4 H 1.48496 * 109.47445 * 269.99905 * 3 2 1 5 5 H 1.48493 * 109.47416 * 30.00478 * 3 2 1 6 6 H 1.48505 * 109.46933 * 150.00098 * 3 2 1 7 7 C 1.37877 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99967 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00021 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47248 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47230 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.47285 * 179.97438 * 12 11 10 14 14 O 1.21281 * 119.99549 * 359.97438 * 13 12 11 15 15 N 1.34770 * 120.00018 * 179.97438 * 13 12 11 16 16 C 1.46922 * 120.63342 * 3.66923 * 15 13 12 17 17 C 1.53194 * 108.77586 * 126.38558 * 16 15 13 18 18 C 1.53047 * 109.31313 * 54.63742 * 17 16 15 19 19 C 1.53038 * 109.53601 * 298.63972 * 18 17 16 20 20 C 1.46931 * 120.63002 * 183.66645 * 15 13 12 21 21 H 1.09000 * 109.58422 * 113.82363 * 20 15 13 22 22 C 1.50704 * 109.70196 * 353.46860 * 20 15 13 23 23 O 1.20823 * 119.99967 * 294.65916 * 22 20 15 24 24 O 1.34231 * 119.99754 * 114.66079 * 22 20 15 25 25 H 0.96997 * 120.00030 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.46572 * 60.01039 * 9 7 2 27 27 H 1.08995 * 109.47522 * 300.00846 * 9 7 2 28 28 H 1.09002 * 109.46808 * 60.00381 * 10 9 7 29 29 H 1.09004 * 109.47431 * 300.00356 * 10 9 7 30 30 H 1.08997 * 109.47285 * 59.99750 * 11 10 9 31 31 H 1.09004 * 109.46810 * 300.00264 * 11 10 9 32 32 H 1.08997 * 109.47475 * 59.99518 * 12 11 10 33 33 H 1.09004 * 109.47155 * 299.99704 * 12 11 10 34 34 H 1.09000 * 109.58446 * 6.60460 * 16 15 13 35 35 H 1.08994 * 109.70908 * 246.24480 * 16 15 13 36 36 H 1.09003 * 109.50126 * 294.68937 * 17 16 15 37 37 H 1.09006 * 109.49774 * 174.58528 * 17 16 15 38 38 H 1.08996 * 109.45990 * 178.61218 * 18 17 16 39 39 H 1.09002 * 109.44546 * 58.64818 * 18 17 16 40 40 H 1.09003 * 109.49221 * 301.40673 * 19 18 17 41 41 H 1.08997 * 109.52052 * 181.33251 * 19 18 17 42 42 H 0.96698 * 116.99637 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 6 2.4745 -6.1500 -0.0005 13 6 1.7211 -7.4551 -0.0005 14 8 0.5082 -7.4551 -0.0005 15 7 2.3949 -8.6222 -0.0005 16 6 3.8618 -8.6398 0.0804 17 6 4.2807 -9.5429 1.2447 18 6 3.6444 -10.9236 1.0686 19 6 2.1199 -10.7904 1.0847 20 6 1.6766 -9.9014 -0.0814 21 1 1.9111 -10.3931 -1.0255 22 6 0.1921 -9.6569 0.0058 23 8 -0.2884 -9.2131 1.0216 24 8 -0.5963 -9.9321 -1.0452 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6246 -2.5571 0.8895 28 1 2.8719 -3.6043 0.8895 29 1 2.8720 -3.6044 -0.8905 30 1 0.8539 -5.0446 -0.8913 31 1 0.8533 -5.0450 0.8886 32 1 3.1006 -6.0923 0.8898 33 1 3.1018 -6.0922 -0.8901 34 1 4.2304 -7.6283 0.2516 35 1 4.2767 -9.0272 -0.8501 36 1 3.9444 -9.1046 2.1844 37 1 5.3662 -9.6414 1.2565 38 1 3.9607 -11.5757 1.8827 39 1 3.9616 -11.3507 0.1172 40 1 1.8041 -10.3404 2.0259 41 1 1.6671 -11.7767 0.9830 42 1 -1.5420 -9.7591 -0.9417 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594608798.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:48 Heat of formation + Delta-G solvation = -147.001215 kcal Electronic energy + Delta-G solvation = -22731.629848 eV Core-core repulsion = 19289.869525 eV Total energy + Delta-G solvation = -3441.760323 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24344 -39.16922 -37.73315 -35.92717 -34.91961 -33.32686 -32.64183 -31.90950 -29.65477 -26.67876 -25.35815 -24.49682 -22.75012 -21.60571 -20.95224 -19.97997 -18.96554 -18.17680 -17.20650 -16.46113 -16.27028 -16.09613 -15.72760 -15.04260 -14.84961 -14.53857 -14.40840 -14.05581 -13.86848 -13.50143 -13.13853 -13.02231 -12.55655 -12.22594 -11.89162 -11.70520 -11.63975 -11.52695 -11.38129 -11.29006 -11.11081 -10.97437 -10.53840 -10.48383 -10.39692 -10.30518 -9.63202 -9.60210 -9.20670 -8.97838 -8.96877 -8.29082 -5.93673 -3.96336 2.08430 2.52722 2.90330 2.99428 3.34977 3.40938 3.44099 4.24157 4.34054 4.49552 4.50538 4.55152 4.68682 4.76036 4.99042 5.10862 5.21193 5.26429 5.30795 5.34456 5.36521 5.41608 5.46407 5.59088 5.63473 5.81993 5.89102 6.10722 6.13640 6.30194 6.54896 6.66161 6.84479 7.00439 7.10401 7.22193 7.75654 7.91696 7.95655 8.07753 8.14777 8.49230 9.11411 9.67223 11.17688 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.027252 B = 0.003158 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.197593 B = 8863.497331 C = 9640.459191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.104 4.104 12 C -0.132 4.132 13 C 0.510 3.490 14 O -0.509 6.509 15 N -0.613 5.613 16 C 0.110 3.890 17 C -0.140 4.140 18 C -0.116 4.116 19 C -0.125 4.125 20 C 0.156 3.844 21 H 0.099 0.901 22 C 0.491 3.509 23 O -0.494 6.494 24 O -0.522 6.522 25 H 0.260 0.740 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.138 -26.103 -0.521 27.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.172 4.172 13 C 0.300 3.700 14 O -0.384 6.384 15 N -0.351 5.351 16 C -0.013 4.013 17 C -0.178 4.178 18 C -0.154 4.154 19 C -0.164 4.164 20 C 0.052 3.948 21 H 0.117 0.883 22 C 0.333 3.667 23 O -0.380 6.380 24 O -0.334 6.334 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.098 0.902 42 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 8.597 -25.911 -0.273 27.301 hybrid contribution -0.139 1.044 0.040 1.054 sum 8.458 -24.867 -0.233 26.267 Atomic orbital electron populations 1.69977 1.06059 1.26504 1.50914 1.25047 0.94840 0.99238 0.95470 0.86606 0.79822 0.83595 0.78032 1.20715 1.21262 1.19909 1.21280 0.92970 0.91191 1.50419 0.92747 1.19092 0.94056 0.91254 0.97324 1.21643 0.99073 0.93921 1.00052 1.21477 0.97016 0.92669 1.03037 1.21805 1.00070 0.91361 1.03935 1.21345 0.88489 0.85543 0.74652 1.90749 1.14015 1.85315 1.48282 1.48219 1.07406 1.03945 1.75535 1.21832 0.78271 1.02161 0.98995 1.21984 1.01078 0.95606 0.99162 1.21499 0.93805 0.97305 1.02763 1.21904 0.97123 0.99208 0.98128 1.20598 0.86341 0.86509 1.01382 0.88291 1.22367 0.89392 0.73754 0.81231 1.90717 1.75722 1.38979 1.32575 1.84403 1.25026 1.80620 1.43357 0.93044 0.96613 0.96584 0.93448 0.93460 0.91825 0.91724 0.88973 0.88870 0.88523 0.90785 0.90944 0.90052 0.90815 0.91287 0.89923 0.90168 0.73000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.84 13.29 55.43 0.74 -27.10 16 2 C 0.05 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.28 5.15 -26.73 -0.14 -2.42 16 11 C -0.10 -1.92 4.50 -26.73 -0.12 -2.04 16 12 C -0.13 -1.81 4.08 -27.88 -0.11 -1.93 16 13 C 0.51 7.60 7.56 -10.99 -0.08 7.52 16 14 O -0.51 -9.72 11.52 -21.47 -0.25 -9.97 16 15 N -0.61 -6.75 2.97 -166.54 -0.49 -7.25 16 16 C 0.11 0.77 6.33 -3.71 -0.02 0.74 16 17 C -0.14 -0.81 6.08 -26.61 -0.16 -0.97 16 18 C -0.12 -0.63 5.88 -26.69 -0.16 -0.79 16 19 C -0.13 -0.99 5.29 -26.62 -0.14 -1.13 16 20 C 0.16 1.62 3.34 -68.75 -0.23 1.39 16 21 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 22 C 0.49 6.80 4.91 36.01 0.18 6.98 16 23 O -0.49 -8.78 15.26 -26.97 -0.41 -9.20 16 24 O -0.52 -6.15 13.42 -41.48 -0.56 -6.71 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.25 8.10 -51.93 -0.42 0.83 16 31 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 32 H 0.09 1.09 7.54 -51.93 -0.39 0.70 16 33 H 0.09 1.07 8.07 -51.93 -0.42 0.65 16 34 H 0.10 0.62 5.95 -51.93 -0.31 0.31 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 40 H 0.08 0.84 7.87 -51.93 -0.41 0.43 16 41 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.41 3.55 9.10 45.56 0.41 3.96 16 LS Contribution 340.35 15.07 5.13 5.13 Total: -1.00 -37.47 340.35 -8.55 -46.03 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -6.15 Total: -1.78 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.54 Total: -6.19 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: 0.24 Total: -34.35 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -1.22 Total: -25.88 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -37.47 -8.55 -46.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594608798.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.975 kcal (2) G-P(sol) polarization free energy of solvation -37.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds