Wall clock time and date at job start Tue Mar 31 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00175 * 2 1 4 4 H 1.48500 * 109.47419 * 239.99994 * 3 2 1 5 5 H 1.48498 * 109.47415 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47036 * 120.00276 * 3 2 1 7 7 C 1.37878 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99921 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00245 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47273 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46852 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46596 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46731 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00172 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99639 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99566 * 179.97438 * 15 13 12 17 17 H 1.08999 * 110.01851 * 31.01768 * 16 15 13 18 18 C 1.54269 * 110.02865 * 152.40437 * 16 15 13 19 19 C 1.54892 * 104.19708 * 142.89735 * 18 16 15 20 20 C 1.54893 * 102.74688 * 322.05773 * 19 18 16 21 21 C 1.53878 * 110.03434 * 269.56674 * 16 15 13 22 22 H 1.09007 * 110.02672 * 121.43358 * 21 16 15 23 23 C 1.50694 * 110.02834 * 0.02562 * 21 16 15 24 24 O 1.20826 * 119.99788 * 277.06867 * 23 21 16 25 25 O 1.34234 * 120.00260 * 97.07509 * 23 21 16 26 26 H 0.96993 * 119.99840 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46954 * 59.99976 * 9 7 2 28 28 H 1.09003 * 109.46859 * 299.99937 * 9 7 2 29 29 H 1.08994 * 109.47097 * 59.99513 * 10 9 7 30 30 H 1.09003 * 109.46964 * 299.99673 * 10 9 7 31 31 H 1.09003 * 109.47119 * 299.99639 * 11 10 9 32 32 H 1.08997 * 109.47114 * 59.99936 * 11 10 9 33 33 H 1.09003 * 109.47269 * 299.99765 * 12 11 10 34 34 H 1.08997 * 109.47263 * 60.00245 * 12 11 10 35 35 H 0.96994 * 120.00478 * 359.97438 * 15 13 12 36 36 H 1.09006 * 110.48391 * 261.57158 * 18 16 15 37 37 H 1.09000 * 110.48789 * 24.21706 * 18 16 15 38 38 H 1.08998 * 110.75863 * 80.36382 * 19 18 16 39 39 H 1.08997 * 110.75484 * 203.74137 * 19 18 16 40 40 H 1.08997 * 110.48912 * 156.62384 * 20 19 18 41 41 H 1.09005 * 110.48269 * 279.26391 * 20 19 18 42 42 H 0.96697 * 116.99609 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6622 -0.0015 11 6 1.4801 -4.9872 -0.0020 12 6 2.4744 -6.1500 -0.0024 13 6 1.7208 -7.4552 -0.0036 14 8 0.5080 -7.4552 -0.0036 15 7 2.3947 -8.6224 -0.0036 16 6 1.6621 -9.8911 -0.0041 17 1 0.7157 -9.7752 -0.5322 18 6 2.5106 -10.9908 -0.6754 19 6 2.2051 -12.2643 0.1516 20 6 2.1098 -11.7179 1.5978 21 6 1.4074 -10.3534 1.4413 22 1 0.3369 -10.4624 1.6152 23 6 1.9896 -9.3582 2.4116 24 8 3.1633 -9.4059 2.6946 25 8 1.2043 -8.4187 2.9617 26 1 -0.4849 0.8400 0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8880 29 1 2.8712 -3.6048 0.8890 30 1 2.8726 -3.6041 -0.8910 31 1 0.8531 -5.0450 0.8878 32 1 0.8539 -5.0447 -0.8922 33 1 3.1011 -6.0920 -0.8923 34 1 3.1010 -6.0927 0.8876 35 1 3.3647 -8.6224 -0.0032 36 1 2.2058 -11.1276 -1.7131 37 1 3.5706 -10.7435 -0.6176 38 1 1.2582 -12.7074 -0.1569 39 1 3.0173 -12.9859 0.0640 40 1 1.5128 -12.3853 2.2193 41 1 3.1052 -11.5880 2.0228 42 1 1.6228 -7.8029 3.5786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:25 Heat of formation + Delta-G solvation = -164.373229 kcal Electronic energy + Delta-G solvation = -22444.438977 eV Core-core repulsion = 19001.925348 eV Total energy + Delta-G solvation = -3442.513630 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.12738 -39.46608 -37.92646 -36.12616 -34.89033 -33.85876 -32.59179 -30.05772 -29.89110 -28.01651 -25.48371 -23.55912 -22.38947 -21.45603 -20.35173 -19.94615 -19.87395 -18.34369 -17.29811 -17.06826 -16.32997 -16.12814 -15.58169 -15.37239 -15.24730 -14.62999 -14.39306 -13.92096 -13.55655 -13.39956 -12.80456 -12.54812 -12.50341 -12.05977 -11.96062 -11.67046 -11.64650 -11.57244 -11.54174 -11.29869 -11.12273 -10.95887 -10.67110 -10.52669 -10.51717 -10.39705 -9.82092 -9.60219 -9.30738 -9.20823 -8.97812 -8.29074 -5.93998 -3.96558 2.02089 2.67339 2.80217 3.10460 3.36161 3.40457 3.42824 3.94772 4.12944 4.49890 4.52994 4.82146 4.85026 4.94430 4.98390 5.04899 5.12902 5.16806 5.32751 5.37217 5.40087 5.41342 5.52151 5.62482 5.68158 5.84701 5.87844 6.14679 6.26875 6.32095 6.37380 6.55939 6.85064 7.03002 7.21017 7.36999 7.75118 7.76037 7.91425 8.07433 8.22356 8.49256 9.10973 9.66967 11.17340 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036845 B = 0.002810 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.758881 B = 9963.468482 C =10157.454736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.053 0.947 9 C 0.021 3.979 10 C -0.110 4.110 11 C -0.102 4.102 12 C -0.139 4.139 13 C 0.511 3.489 14 O -0.523 6.523 15 N -0.741 5.741 16 C 0.154 3.846 17 H 0.106 0.894 18 C -0.130 4.130 19 C -0.120 4.120 20 C -0.117 4.117 21 C -0.103 4.103 22 H 0.108 0.892 23 C 0.497 3.503 24 O -0.520 6.520 25 O -0.507 6.507 26 H 0.260 0.740 27 H 0.016 0.984 28 H 0.016 0.984 29 H 0.046 0.954 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.403 0.597 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.593 -26.932 1.499 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.179 4.179 13 C 0.298 3.702 14 O -0.397 6.397 15 N -0.395 5.395 16 C 0.049 3.951 17 H 0.124 0.876 18 C -0.168 4.168 19 C -0.158 4.158 20 C -0.155 4.155 21 C -0.124 4.124 22 H 0.127 0.873 23 C 0.339 3.661 24 O -0.409 6.409 25 O -0.318 6.318 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.238 0.762 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.660 -27.062 1.295 27.490 hybrid contribution 1.184 1.404 0.488 1.900 sum 5.844 -25.658 1.783 26.375 Atomic orbital electron populations 1.69963 1.06043 1.26620 1.50866 1.25038 0.94842 0.99208 0.95455 0.86671 0.79576 0.83256 0.78550 1.20287 1.21312 1.20294 1.21253 0.92946 0.91233 1.50513 0.92827 1.19086 0.94030 0.91226 0.97297 1.21654 0.99079 0.94029 1.00049 1.21444 0.96941 0.92619 1.02976 1.21805 1.00116 0.92042 1.03947 1.21175 0.88588 0.85611 0.74806 1.90713 1.13949 1.87515 1.47546 1.46418 1.10483 1.05318 1.77276 1.21523 0.97678 0.83642 0.92274 0.87564 1.22685 1.00371 0.93910 0.99813 1.22441 1.02455 0.96943 0.93920 1.22474 1.01880 0.92979 0.98123 1.22221 1.02911 0.93497 0.93756 0.87349 1.23036 0.84547 0.79976 0.78525 1.90672 1.17775 1.72231 1.60202 1.84623 1.45907 1.42787 1.58455 0.92986 0.96596 0.96601 0.93533 0.93499 0.91754 0.91796 0.89128 0.89365 0.76190 0.90122 0.90408 0.90663 0.90433 0.90597 0.89484 0.73209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.69 13.29 55.43 0.74 -26.95 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 11 C -0.10 -1.84 4.50 -26.73 -0.12 -1.96 16 12 C -0.14 -1.91 5.70 -27.88 -0.16 -2.07 16 13 C 0.51 7.07 7.00 -10.98 -0.08 6.99 16 14 O -0.52 -9.19 15.59 5.56 0.09 -9.10 16 15 N -0.74 -7.64 3.74 -52.71 -0.20 -7.84 16 16 C 0.15 1.37 3.27 -66.81 -0.22 1.16 16 17 H 0.11 1.07 7.49 -51.93 -0.39 0.69 16 18 C -0.13 -0.78 6.53 -25.07 -0.16 -0.95 16 19 C -0.12 -0.60 6.91 -24.74 -0.17 -0.77 16 20 C -0.12 -0.78 6.32 -25.07 -0.16 -0.94 16 21 C -0.10 -0.91 3.40 -90.66 -0.31 -1.22 16 22 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 23 C 0.50 5.57 5.47 36.00 0.20 5.77 16 24 O -0.52 -6.66 16.53 -18.75 -0.31 -6.97 16 25 O -0.51 -5.76 13.24 -39.27 -0.52 -6.28 16 26 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 32 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 33 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.40 3.49 8.39 -40.82 -0.34 3.14 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.45 7.76 -51.93 -0.40 0.05 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.09 0.70 6.95 -51.93 -0.36 0.34 16 42 H 0.41 3.27 9.10 45.56 0.41 3.68 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -35.54 348.55 -7.95 -43.49 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.11 Total: 1.32 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -1.87 Total: -9.94 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: 0.54 Total: -34.79 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.74 Total: -22.36 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.54 -7.95 -43.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.884 kcal (2) G-P(sol) polarization free energy of solvation -35.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds