Wall clock time and date at job start Tue Mar 31 2020 05:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00175 * 2 1 4 4 H 1.48500 * 109.47419 * 239.99994 * 3 2 1 5 5 H 1.48498 * 109.47415 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47036 * 120.00276 * 3 2 1 7 7 C 1.37878 * 119.99804 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99921 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00245 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47273 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.46852 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46596 * 179.97438 * 11 10 9 13 13 C 1.50707 * 109.46731 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00172 * 359.97438 * 13 12 11 15 15 N 1.34776 * 119.99639 * 180.02562 * 13 12 11 16 16 C 1.46503 * 119.99566 * 179.97438 * 15 13 12 17 17 H 1.08999 * 110.01851 * 31.01768 * 16 15 13 18 18 C 1.54269 * 110.02865 * 152.40437 * 16 15 13 19 19 C 1.54892 * 104.19708 * 142.89735 * 18 16 15 20 20 C 1.54893 * 102.74688 * 322.05773 * 19 18 16 21 21 C 1.53878 * 110.03434 * 269.56674 * 16 15 13 22 22 H 1.09007 * 110.02672 * 121.43358 * 21 16 15 23 23 C 1.50694 * 110.02834 * 0.02562 * 21 16 15 24 24 O 1.20826 * 119.99788 * 277.06867 * 23 21 16 25 25 O 1.34234 * 120.00260 * 97.07509 * 23 21 16 26 26 H 0.96993 * 119.99840 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.46954 * 59.99976 * 9 7 2 28 28 H 1.09003 * 109.46859 * 299.99937 * 9 7 2 29 29 H 1.08994 * 109.47097 * 59.99513 * 10 9 7 30 30 H 1.09003 * 109.46964 * 299.99673 * 10 9 7 31 31 H 1.09003 * 109.47119 * 299.99639 * 11 10 9 32 32 H 1.08997 * 109.47114 * 59.99936 * 11 10 9 33 33 H 1.09003 * 109.47269 * 299.99765 * 12 11 10 34 34 H 1.08997 * 109.47263 * 60.00245 * 12 11 10 35 35 H 0.96994 * 120.00478 * 359.97438 * 15 13 12 36 36 H 1.09006 * 110.48391 * 261.57158 * 18 16 15 37 37 H 1.09000 * 110.48789 * 24.21706 * 18 16 15 38 38 H 1.08998 * 110.75863 * 80.36382 * 19 18 16 39 39 H 1.08997 * 110.75484 * 203.74137 * 19 18 16 40 40 H 1.08997 * 110.48912 * 156.62384 * 20 19 18 41 41 H 1.09005 * 110.48269 * 279.26391 * 20 19 18 42 42 H 0.96697 * 116.99609 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6622 -0.0015 11 6 1.4801 -4.9872 -0.0020 12 6 2.4744 -6.1500 -0.0024 13 6 1.7208 -7.4552 -0.0036 14 8 0.5080 -7.4552 -0.0036 15 7 2.3947 -8.6224 -0.0036 16 6 1.6621 -9.8911 -0.0041 17 1 0.7157 -9.7752 -0.5322 18 6 2.5106 -10.9908 -0.6754 19 6 2.2051 -12.2643 0.1516 20 6 2.1098 -11.7179 1.5978 21 6 1.4074 -10.3534 1.4413 22 1 0.3369 -10.4624 1.6152 23 6 1.9896 -9.3582 2.4116 24 8 3.1633 -9.4059 2.6946 25 8 1.2043 -8.4187 2.9617 26 1 -0.4849 0.8400 0.0004 27 1 0.6247 -2.5563 -0.8919 28 1 0.6240 -2.5575 0.8880 29 1 2.8712 -3.6048 0.8890 30 1 2.8726 -3.6041 -0.8910 31 1 0.8531 -5.0450 0.8878 32 1 0.8539 -5.0447 -0.8922 33 1 3.1011 -6.0920 -0.8923 34 1 3.1010 -6.0927 0.8876 35 1 3.3647 -8.6224 -0.0032 36 1 2.2058 -11.1276 -1.7131 37 1 3.5706 -10.7435 -0.6176 38 1 1.2582 -12.7074 -0.1569 39 1 3.0173 -12.9859 0.0640 40 1 1.5128 -12.3853 2.2193 41 1 3.1052 -11.5880 2.0228 42 1 1.6228 -7.8029 3.5786 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609028.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:25 Heat of formation + Delta-G solvation = -188.306063 kcal Electronic energy + Delta-G solvation = -22445.476783 eV Core-core repulsion = 19001.925348 eV Total energy + Delta-G solvation = -3443.551435 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.97599 -40.50978 -38.70087 -37.03521 -36.62502 -34.78294 -34.58356 -31.59271 -30.61700 -28.97494 -27.18194 -24.55412 -23.92122 -22.09709 -21.83127 -21.21714 -20.65363 -19.22103 -18.43516 -18.10053 -18.05417 -17.24490 -16.66003 -16.54185 -16.26064 -16.03493 -15.37096 -15.29469 -14.55732 -14.53990 -14.12715 -13.84922 -13.62091 -13.46659 -13.17682 -13.03094 -12.79051 -12.56053 -12.42883 -12.36587 -12.17713 -12.15458 -12.05517 -11.93364 -11.59227 -11.51534 -11.39760 -11.36412 -11.17655 -10.77010 -10.54912 -10.22407 -8.19113 -6.31421 1.15375 1.39750 1.43721 1.51636 1.59735 1.99448 2.26395 2.41699 3.13415 3.36221 3.53721 3.81458 3.96969 4.03311 4.11108 4.22504 4.37038 4.38664 4.41597 4.47033 4.62147 4.64318 4.69153 4.80374 4.85946 4.93495 5.02366 5.14715 5.17118 5.19687 5.31315 5.34529 5.38812 5.48122 5.55988 5.57958 5.77060 5.87285 6.24852 6.45340 6.86700 6.94331 7.20885 7.38132 8.92972 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.036845 B = 0.002810 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.758881 B = 9963.468482 C =10157.454736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.065 0.935 9 C 0.020 3.980 10 C -0.096 4.096 11 C -0.092 4.092 12 C -0.131 4.131 13 C 0.512 3.488 14 O -0.568 6.568 15 N -0.725 5.725 16 C 0.148 3.852 17 H 0.092 0.908 18 C -0.123 4.123 19 C -0.112 4.112 20 C -0.112 4.112 21 C -0.106 4.106 22 H 0.108 0.892 23 C 0.494 3.506 24 O -0.538 6.538 25 O -0.520 6.520 26 H 0.263 0.737 27 H -0.015 1.015 28 H -0.015 1.015 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.414 0.586 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 -28.028 1.128 29.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.793 3.207 4 H -0.189 1.189 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.083 0.917 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.130 4.130 12 C -0.171 4.171 13 C 0.300 3.700 14 O -0.446 6.446 15 N -0.379 5.379 16 C 0.043 3.957 17 H 0.110 0.890 18 C -0.161 4.161 19 C -0.150 4.150 20 C -0.149 4.149 21 C -0.127 4.127 22 H 0.127 0.873 23 C 0.337 3.663 24 O -0.428 6.428 25 O -0.333 6.333 26 H 0.072 0.928 27 H 0.004 0.996 28 H 0.004 0.996 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.135 0.865 34 H 0.126 0.874 35 H 0.251 0.749 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.105 0.895 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.093 0.907 42 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges 6.996 -28.194 0.929 29.064 hybrid contribution 0.423 1.727 0.635 1.888 sum 7.419 -26.467 1.563 27.531 Atomic orbital electron populations 1.70120 1.08037 1.27850 1.51753 1.26081 0.95786 1.03688 0.94735 0.85447 0.78198 0.77744 0.79328 1.18918 1.20971 1.18971 1.21728 0.93705 0.92303 1.50464 0.91708 1.19035 0.94617 0.93641 0.94371 1.21453 0.97853 0.92921 1.01146 1.21215 0.97309 0.93307 1.01219 1.21681 0.99087 0.90155 1.06166 1.21131 0.87952 0.86549 0.74378 1.90705 1.15771 1.88125 1.49990 1.46282 1.11029 1.04964 1.75591 1.21720 0.97707 0.83677 0.92561 0.88969 1.22690 1.00048 0.93072 1.00283 1.22457 1.03724 0.96602 0.92184 1.22472 1.01038 0.91825 0.99601 1.22367 1.03182 0.94109 0.93021 0.87336 1.23500 0.84349 0.79945 0.78475 1.90657 1.18471 1.72762 1.60942 1.84629 1.46542 1.43237 1.58859 0.92803 0.99616 0.99646 0.92346 0.92198 0.93663 0.93608 0.86532 0.87412 0.74896 0.88989 0.89809 0.89523 0.88829 0.89292 0.90674 0.71979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.28 13.29 21.45 0.28 -59.00 16 2 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 3 Si 0.97 45.08 29.54 68.60 2.03 47.10 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.73 7.11 99.48 0.71 -11.03 16 7 C -0.54 -31.87 9.11 25.60 0.23 -31.63 16 8 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.02 1.14 4.97 29.85 0.15 1.28 16 10 C -0.10 -4.00 5.15 30.60 0.16 -3.84 16 11 C -0.09 -3.38 4.50 30.59 0.14 -3.24 16 12 C -0.13 -3.40 5.70 29.85 0.17 -3.23 16 13 C 0.51 13.85 7.00 87.66 0.61 14.46 16 14 O -0.57 -20.34 15.59 -3.03 -0.05 -20.39 16 15 N -0.72 -13.96 3.74 -439.08 -1.64 -15.60 16 16 C 0.15 2.46 3.27 45.72 0.15 2.61 16 17 H 0.09 1.83 7.49 -2.39 -0.02 1.81 16 18 C -0.12 -1.18 6.53 31.67 0.21 -0.97 16 19 C -0.11 -0.80 6.91 31.89 0.22 -0.58 16 20 C -0.11 -1.27 6.32 31.67 0.20 -1.07 16 21 C -0.11 -1.78 3.40 -10.82 -0.04 -1.82 16 22 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 23 C 0.49 10.79 5.47 71.23 0.39 11.18 16 24 O -0.54 -13.29 16.53 21.96 0.36 -12.93 16 25 O -0.52 -11.86 13.24 -51.45 -0.68 -12.55 16 26 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 27 H -0.01 -0.88 8.14 -2.39 -0.02 -0.90 16 28 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 29 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 32 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 35 H 0.41 6.24 8.39 -92.71 -0.78 5.46 16 36 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.08 0.73 7.76 -2.39 -0.02 0.71 16 38 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.07 1.08 6.95 -2.38 -0.02 1.06 16 42 H 0.42 6.77 9.10 -74.06 -0.67 6.10 16 Total: -1.00 -78.51 348.55 2.93 -75.59 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -0.43 Total: 14.50 kcal Atomic # 6 Polarization: -19.78 SS G_CDS: 3.05 Total: -16.72 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -1.36 Total: -74.60 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -0.37 Total: -45.87 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.10 kcal Total: -78.51 2.93 -75.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609028.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.720 kcal (2) G-P(sol) polarization free energy of solvation -78.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds