Wall clock time and date at job start Tue Mar 31 2020 05:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00320 * 2 1 4 4 H 1.48504 * 109.46831 * 269.99726 * 3 2 1 5 5 H 1.48498 * 109.47301 * 29.99636 * 3 2 1 6 6 H 1.48497 * 109.47153 * 149.99808 * 3 2 1 7 7 C 1.37875 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00564 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46894 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46894 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47390 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99773 * 359.97438 * 13 12 11 15 15 N 1.34768 * 120.00200 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00172 * 359.97438 * 15 13 12 17 17 C 1.50694 * 109.47463 * 275.71202 * 16 15 13 18 18 O 1.20828 * 120.00214 * 0.02562 * 17 16 15 19 19 O 1.34226 * 120.00367 * 179.97438 * 17 16 15 20 20 C 1.46507 * 120.00081 * 179.97438 * 15 13 12 21 21 C 1.53777 * 113.61428 * 223.49615 * 20 15 13 22 22 C 1.53959 * 87.02021 * 220.04728 * 21 20 15 23 23 C 1.53777 * 113.61287 * 125.88706 * 20 15 13 24 24 H 0.97007 * 119.99689 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47161 * 59.99328 * 9 7 2 26 26 H 1.09005 * 109.46767 * 300.00087 * 9 7 2 27 27 H 1.08998 * 109.46674 * 59.99403 * 10 9 7 28 28 H 1.08998 * 109.46993 * 299.99807 * 10 9 7 29 29 H 1.08995 * 109.47213 * 60.00335 * 11 10 9 30 30 H 1.08998 * 109.47385 * 299.99864 * 11 10 9 31 31 H 1.09001 * 109.47139 * 59.99475 * 12 11 10 32 32 H 1.08998 * 109.46993 * 300.00103 * 12 11 10 33 33 H 1.09000 * 109.47172 * 35.71272 * 16 15 13 34 34 H 1.09003 * 109.47711 * 155.71071 * 16 15 13 35 35 H 0.96705 * 117.00207 * 180.02562 * 19 17 16 36 36 H 1.09002 * 112.84792 * 354.69468 * 20 15 13 37 37 H 1.09002 * 113.61670 * 334.56889 * 21 20 15 38 38 H 1.09000 * 113.61398 * 105.47179 * 21 20 15 39 39 H 1.08996 * 113.53488 * 270.81721 * 22 21 20 40 40 H 1.09001 * 113.66573 * 139.93396 * 22 21 20 41 41 H 1.09004 * 113.61941 * 254.52978 * 23 20 15 42 42 H 1.09009 * 113.61635 * 25.35215 * 23 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6368 0.0023 11 6 5.5514 -2.6368 0.0022 12 6 6.0613 -4.0793 0.0040 13 6 7.5683 -4.0795 0.0046 14 8 8.1748 -3.0292 0.0032 15 7 8.2421 -5.2466 0.0057 16 6 7.5096 -6.5153 0.0068 17 6 7.1359 -6.8784 1.4208 18 8 7.4489 -6.1517 2.3340 19 8 6.4545 -8.0085 1.6658 20 6 9.7072 -5.2467 0.0057 21 6 10.3231 -6.2697 -0.9632 22 6 11.3694 -6.5545 0.1296 23 6 10.3231 -6.0717 1.1480 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8910 26 1 3.8752 -0.6806 -0.8889 27 1 3.6583 -3.1511 -0.8875 28 1 3.6577 -3.1499 0.8925 29 1 5.9148 -2.1223 0.8918 30 1 5.9147 -2.1237 -0.8882 31 1 5.6979 -4.5943 -0.8852 32 1 5.6980 -4.5920 0.8947 33 1 6.6053 -6.4132 -0.5932 34 1 8.1390 -7.2988 -0.4152 35 1 6.2371 -8.1989 2.5887 36 1 10.1305 -4.2466 -0.0881 37 1 9.6715 -7.1174 -1.1755 38 1 10.7421 -5.8209 -1.8638 39 1 12.2481 -5.9125 0.0688 40 1 11.6214 -7.6103 0.2297 41 1 10.7421 -5.4632 1.9494 42 1 9.6709 -6.8643 1.5151 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:38 Heat of formation + Delta-G solvation = -119.008721 kcal Electronic energy + Delta-G solvation = -22531.553379 eV Core-core repulsion = 19091.006902 eV Total energy + Delta-G solvation = -3440.546477 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.22914 -39.82549 -38.45273 -36.46272 -35.04273 -34.77681 -32.54149 -30.18051 -28.97868 -26.56651 -26.04951 -24.68975 -22.66430 -21.90942 -20.04359 -19.85402 -19.14969 -18.52140 -17.58103 -17.14020 -16.65926 -16.51549 -15.93719 -15.54280 -15.39743 -14.32641 -14.26664 -14.04181 -13.49065 -13.28639 -12.96953 -12.89748 -12.62711 -12.59339 -12.28916 -12.16744 -11.79463 -11.74053 -11.55924 -11.16182 -11.10160 -10.83292 -10.77560 -10.72576 -10.52869 -9.97647 -9.80764 -9.63466 -9.41352 -9.10543 -9.05828 -8.47966 -5.99298 -3.96650 1.82613 2.18931 2.60508 2.97450 3.36613 3.43604 3.50185 4.08328 4.25360 4.35462 4.42716 4.50783 4.51580 4.58905 4.73643 4.89144 5.15302 5.26026 5.26596 5.27962 5.35728 5.36860 5.50744 5.57774 5.67036 5.72569 5.91840 6.02313 6.11347 6.15520 6.24191 6.42081 6.68862 6.81744 6.99096 7.05883 7.39435 7.52464 7.53634 7.86087 8.04436 8.59647 9.05600 9.64213 11.14239 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025686 B = 0.003299 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.819219 B = 8486.514736 C = 9198.965782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.519 4.519 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.106 4.106 12 C -0.142 4.142 13 C 0.524 3.476 14 O -0.523 6.523 15 N -0.596 5.596 16 C 0.115 3.885 17 C 0.451 3.549 18 O -0.495 6.495 19 O -0.517 6.517 20 C 0.122 3.878 21 C -0.154 4.154 22 C -0.140 4.140 23 C -0.148 4.148 24 H 0.262 0.738 25 H 0.016 0.984 26 H 0.012 0.988 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.413 0.587 36 H 0.125 0.875 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.435 -20.066 -0.669 29.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.189 1.189 7 C -0.557 4.557 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.140 4.140 11 C -0.144 4.144 12 C -0.182 4.182 13 C 0.314 3.686 14 O -0.398 6.398 15 N -0.330 5.330 16 C -0.010 4.010 17 C 0.291 3.709 18 O -0.381 6.381 19 O -0.329 6.329 20 C 0.018 3.982 21 C -0.192 4.192 22 C -0.178 4.178 23 C -0.187 4.187 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.144 0.856 34 H 0.143 0.857 35 H 0.272 0.728 36 H 0.143 0.857 37 H 0.104 0.896 38 H 0.096 0.904 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 21.781 -19.041 -0.818 28.942 hybrid contribution 0.109 0.593 0.780 0.986 sum 21.891 -18.448 -0.038 28.628 Atomic orbital electron populations 1.69924 1.06309 1.26816 1.51525 1.25039 0.94733 0.99224 0.94610 0.86773 0.80460 0.83538 0.78538 1.20298 1.21458 1.18887 1.21184 0.89654 0.94380 1.50479 0.91114 1.19577 0.96911 0.92436 0.96344 1.21474 0.91595 1.00006 1.00895 1.21488 0.97309 0.92546 1.03014 1.21876 0.90284 1.02232 1.03773 1.21083 0.90862 0.82636 0.74020 1.90692 1.70494 1.30567 1.48037 1.47734 1.06249 1.04698 1.74277 1.20985 1.00399 0.88995 0.90655 1.24234 0.74736 0.78431 0.93531 1.90802 1.50405 1.50335 1.46557 1.84506 1.69169 1.41988 1.37242 1.22752 0.78528 1.00705 0.96172 1.23488 0.98239 0.99277 0.98209 1.22744 0.97045 1.01793 0.96168 1.23372 0.97866 0.99916 0.97549 0.92825 0.96613 0.97007 0.92820 0.92909 0.91717 0.91613 0.88817 0.89341 0.85570 0.85662 0.72782 0.85689 0.89641 0.90444 0.89665 0.90873 0.90820 0.90345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.61 13.96 55.43 0.77 -27.83 16 2 C 0.06 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.59 27.47 -169.99 -4.67 17.92 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.26 -6.62 6.54 56.52 0.37 -6.25 16 7 C -0.52 -15.24 9.66 -34.44 -0.33 -15.58 16 8 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 10 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 11 C -0.11 -1.84 4.50 -26.73 -0.12 -1.96 16 12 C -0.14 -1.91 4.31 -27.88 -0.12 -2.03 16 13 C 0.52 7.45 7.47 -10.99 -0.08 7.37 16 14 O -0.52 -9.43 15.44 5.56 0.09 -9.34 16 15 N -0.60 -6.28 2.24 -166.55 -0.37 -6.65 16 16 C 0.12 0.82 5.13 -5.20 -0.03 0.80 16 17 C 0.45 3.99 6.62 36.00 0.24 4.23 16 18 O -0.49 -6.35 16.20 -18.75 -0.30 -6.66 16 19 O -0.52 -3.29 13.42 -39.25 -0.53 -3.82 16 20 C 0.12 1.16 4.23 -67.12 -0.28 0.88 16 21 C -0.15 -0.98 7.58 -25.83 -0.20 -1.17 16 22 C -0.14 -0.85 8.09 -25.82 -0.21 -1.06 16 23 C -0.15 -1.26 7.33 -25.92 -0.19 -1.45 16 24 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 25 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 26 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 27 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.09 1.00 7.41 -51.93 -0.39 0.62 16 32 H 0.09 1.16 7.53 -51.93 -0.39 0.76 16 33 H 0.13 0.68 6.68 -51.93 -0.35 0.33 16 34 H 0.13 0.53 5.78 -51.93 -0.30 0.23 16 35 H 0.41 1.27 9.10 45.56 0.41 1.68 16 36 H 0.13 1.43 7.18 -51.93 -0.37 1.05 16 37 H 0.09 0.42 5.99 -51.93 -0.31 0.11 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.68 5.99 -51.92 -0.31 0.37 16 LS Contribution 340.85 15.07 5.14 5.14 Total: -1.00 -37.12 340.85 -7.28 -44.40 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -5.73 Total: -2.32 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -1.67 Total: -10.83 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.40 Total: -34.48 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.74 Total: -19.82 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.67 Total: 17.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -37.12 -7.28 -44.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.613 kcal (2) G-P(sol) polarization free energy of solvation -37.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds