Wall clock time and date at job start Tue Mar 31 2020 05:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00320 * 2 1 4 4 H 1.48504 * 109.46831 * 269.99726 * 3 2 1 5 5 H 1.48498 * 109.47301 * 29.99636 * 3 2 1 6 6 H 1.48497 * 109.47153 * 149.99808 * 3 2 1 7 7 C 1.37875 * 119.99478 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00564 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00001 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47384 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46894 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.46894 * 179.97438 * 11 10 9 13 13 C 1.50698 * 109.47390 * 180.02562 * 12 11 10 14 14 O 1.21281 * 119.99773 * 359.97438 * 13 12 11 15 15 N 1.34768 * 120.00200 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00172 * 359.97438 * 15 13 12 17 17 C 1.50694 * 109.47463 * 275.71202 * 16 15 13 18 18 O 1.20828 * 120.00214 * 0.02562 * 17 16 15 19 19 O 1.34226 * 120.00367 * 179.97438 * 17 16 15 20 20 C 1.46507 * 120.00081 * 179.97438 * 15 13 12 21 21 C 1.53777 * 113.61428 * 223.49615 * 20 15 13 22 22 C 1.53959 * 87.02021 * 220.04728 * 21 20 15 23 23 C 1.53777 * 113.61287 * 125.88706 * 20 15 13 24 24 H 0.97007 * 119.99689 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47161 * 59.99328 * 9 7 2 26 26 H 1.09005 * 109.46767 * 300.00087 * 9 7 2 27 27 H 1.08998 * 109.46674 * 59.99403 * 10 9 7 28 28 H 1.08998 * 109.46993 * 299.99807 * 10 9 7 29 29 H 1.08995 * 109.47213 * 60.00335 * 11 10 9 30 30 H 1.08998 * 109.47385 * 299.99864 * 11 10 9 31 31 H 1.09001 * 109.47139 * 59.99475 * 12 11 10 32 32 H 1.08998 * 109.46993 * 300.00103 * 12 11 10 33 33 H 1.09000 * 109.47172 * 35.71272 * 16 15 13 34 34 H 1.09003 * 109.47711 * 155.71071 * 16 15 13 35 35 H 0.96705 * 117.00207 * 180.02562 * 19 17 16 36 36 H 1.09002 * 112.84792 * 354.69468 * 20 15 13 37 37 H 1.09002 * 113.61670 * 334.56889 * 21 20 15 38 38 H 1.09000 * 113.61398 * 105.47179 * 21 20 15 39 39 H 1.08996 * 113.53488 * 270.81721 * 22 21 20 40 40 H 1.09001 * 113.66573 * 139.93396 * 22 21 20 41 41 H 1.09004 * 113.61941 * 254.52978 * 23 20 15 42 42 H 1.09009 * 113.61635 * 25.35215 * 23 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6368 0.0023 11 6 5.5514 -2.6368 0.0022 12 6 6.0613 -4.0793 0.0040 13 6 7.5683 -4.0795 0.0046 14 8 8.1748 -3.0292 0.0032 15 7 8.2421 -5.2466 0.0057 16 6 7.5096 -6.5153 0.0068 17 6 7.1359 -6.8784 1.4208 18 8 7.4489 -6.1517 2.3340 19 8 6.4545 -8.0085 1.6658 20 6 9.7072 -5.2467 0.0057 21 6 10.3231 -6.2697 -0.9632 22 6 11.3694 -6.5545 0.1296 23 6 10.3231 -6.0717 1.1480 24 1 -0.4850 0.8401 -0.0004 25 1 3.8745 -0.6801 0.8910 26 1 3.8752 -0.6806 -0.8889 27 1 3.6583 -3.1511 -0.8875 28 1 3.6577 -3.1499 0.8925 29 1 5.9148 -2.1223 0.8918 30 1 5.9147 -2.1237 -0.8882 31 1 5.6979 -4.5943 -0.8852 32 1 5.6980 -4.5920 0.8947 33 1 6.6053 -6.4132 -0.5932 34 1 8.1390 -7.2988 -0.4152 35 1 6.2371 -8.1989 2.5887 36 1 10.1305 -4.2466 -0.0881 37 1 9.6715 -7.1174 -1.1755 38 1 10.7421 -5.8209 -1.8638 39 1 12.2481 -5.9125 0.0688 40 1 11.6214 -7.6103 0.2297 41 1 10.7421 -5.4632 1.9494 42 1 9.6709 -6.8643 1.5151 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609082.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:37 Heat of formation + Delta-G solvation = -144.363285 kcal Electronic energy + Delta-G solvation = -22532.652836 eV Core-core repulsion = 19091.006902 eV Total energy + Delta-G solvation = -3441.645934 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.00213 -40.61467 -39.29613 -37.10872 -36.70121 -35.62516 -34.59391 -31.89446 -29.66038 -28.09451 -26.62880 -25.77605 -23.73049 -23.09328 -21.78628 -20.66877 -19.90246 -19.16324 -18.90458 -18.37294 -17.88310 -17.43515 -16.76256 -16.56290 -16.34022 -16.06002 -15.55840 -15.24620 -14.71508 -14.30436 -13.97889 -13.89040 -13.75189 -13.65329 -13.47758 -13.33101 -13.16133 -12.87395 -12.47743 -12.37602 -12.21483 -12.12186 -11.87316 -11.77579 -11.55019 -11.47763 -11.38473 -11.34876 -11.28521 -10.80198 -10.76836 -9.88037 -8.30685 -6.33663 1.17548 1.33687 1.34791 1.35612 1.48441 1.72996 2.29915 2.35132 3.04745 3.34821 3.63051 3.67892 3.87162 3.90073 3.91205 3.95226 4.05312 4.25827 4.32876 4.51403 4.57544 4.65736 4.67413 4.72271 4.78575 4.81427 4.98997 5.05683 5.07301 5.08840 5.17204 5.21853 5.29513 5.54570 5.56538 5.62547 5.63060 5.66964 6.15981 6.28383 6.73955 6.95798 7.05423 7.31208 8.85931 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.025686 B = 0.003299 C = 0.003043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.819219 B = 8486.514736 C = 9198.965782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.264 1.264 5 H -0.281 1.281 6 H -0.255 1.255 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.017 4.017 10 C -0.092 4.092 11 C -0.097 4.097 12 C -0.134 4.134 13 C 0.519 3.481 14 O -0.575 6.575 15 N -0.589 5.589 16 C 0.106 3.894 17 C 0.457 3.543 18 O -0.543 6.543 19 O -0.507 6.507 20 C 0.104 3.896 21 C -0.138 4.138 22 C -0.128 4.128 23 C -0.150 4.150 24 H 0.266 0.734 25 H 0.010 0.990 26 H 0.016 0.984 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.130 0.870 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.162 0.838 35 H 0.427 0.573 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.915 -21.902 -1.781 31.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.189 1.189 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.054 4.054 10 C -0.130 4.130 11 C -0.135 4.135 12 C -0.174 4.174 13 C 0.310 3.690 14 O -0.454 6.454 15 N -0.320 5.320 16 C -0.018 4.018 17 C 0.299 3.701 18 O -0.433 6.433 19 O -0.320 6.320 20 C 0.001 3.999 21 C -0.176 4.176 22 C -0.166 4.166 23 C -0.188 4.188 24 H 0.075 0.925 25 H 0.028 0.972 26 H 0.034 0.966 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.148 0.852 32 H 0.113 0.887 33 H 0.170 0.830 34 H 0.180 0.820 35 H 0.289 0.711 36 H 0.115 0.885 37 H 0.128 0.872 38 H 0.100 0.900 39 H 0.105 0.895 40 H 0.111 0.889 41 H 0.071 0.929 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 23.264 -20.961 -1.931 31.373 hybrid contribution -0.420 1.031 1.173 1.617 sum 22.844 -19.930 -0.758 30.325 Atomic orbital electron populations 1.70058 1.08084 1.28096 1.52858 1.25973 0.95611 1.03335 0.94265 0.85707 0.79283 0.78687 0.79294 1.18928 1.20712 1.17920 1.21531 0.92006 0.93274 1.50013 0.94357 1.19571 0.94004 0.95743 0.96082 1.21329 0.93388 0.96911 1.01370 1.21278 0.95110 0.95288 1.01799 1.21777 0.90081 0.99731 1.05798 1.21181 0.91110 0.83073 0.73678 1.90670 1.71340 1.32582 1.50787 1.47714 1.06793 1.04953 1.72532 1.21445 1.01934 0.88200 0.90182 1.24489 0.73808 0.78173 0.93623 1.90806 1.52493 1.51932 1.48070 1.84473 1.68246 1.40665 1.38664 1.22919 0.78045 1.00436 0.98519 1.23465 0.97913 0.98559 0.97626 1.22722 0.96439 1.02881 0.94564 1.23367 0.98733 0.99525 0.97193 0.92478 0.97189 0.96570 0.91728 0.93033 0.93790 0.92108 0.85223 0.88699 0.83043 0.82036 0.71073 0.88514 0.87242 0.89978 0.89521 0.88926 0.92877 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 2 C 0.00 0.29 5.47 84.65 0.46 0.76 16 3 Si 0.95 46.51 27.47 68.60 1.88 48.40 16 4 H -0.26 -12.39 7.11 99.48 0.71 -11.69 16 5 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 6 H -0.26 -12.07 6.54 99.48 0.65 -11.42 16 7 C -0.53 -31.58 9.66 25.60 0.25 -31.33 16 8 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 9 C -0.02 -0.82 4.04 29.85 0.12 -0.70 16 10 C -0.09 -3.65 5.15 30.59 0.16 -3.49 16 11 C -0.10 -3.31 4.50 30.59 0.14 -3.17 16 12 C -0.13 -3.39 4.31 29.85 0.13 -3.27 16 13 C 0.52 14.42 7.47 87.66 0.65 15.08 16 14 O -0.57 -21.24 15.44 -3.03 -0.05 -21.29 16 15 N -0.59 -11.46 2.24 -799.24 -1.79 -13.25 16 16 C 0.11 1.15 5.13 85.63 0.44 1.59 16 17 C 0.46 7.02 6.62 71.23 0.47 7.50 16 18 O -0.54 -13.52 16.20 21.96 0.36 -13.16 16 19 O -0.51 -4.97 13.42 -51.38 -0.69 -5.66 16 20 C 0.10 1.89 4.23 45.51 0.19 2.08 16 21 C -0.14 -1.34 7.58 31.18 0.24 -1.10 16 22 C -0.13 -1.25 8.09 31.18 0.25 -1.00 16 23 C -0.15 -2.40 7.33 31.12 0.23 -2.18 16 24 H 0.27 15.89 8.31 -92.70 -0.77 15.12 16 25 H 0.01 0.49 7.20 -2.39 -0.02 0.48 16 26 H 0.02 0.78 7.57 -2.38 -0.02 0.76 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 28 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 30 H 0.06 2.13 8.10 -2.39 -0.02 2.11 16 31 H 0.13 2.31 7.41 -2.39 -0.02 2.29 16 32 H 0.09 2.31 7.53 -2.39 -0.02 2.29 16 33 H 0.15 0.94 6.68 -2.39 -0.02 0.92 16 34 H 0.16 0.58 5.78 -2.39 -0.01 0.57 16 35 H 0.43 1.63 9.10 -74.05 -0.67 0.95 16 36 H 0.10 2.31 7.18 -2.39 -0.02 2.30 16 37 H 0.11 0.54 5.99 -2.39 -0.01 0.52 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 42 H 0.08 1.26 5.99 -2.38 -0.01 1.25 16 Total: -1.00 -83.44 340.85 4.04 -79.40 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: 0.30 Total: 5.38 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 3.73 Total: -19.23 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -1.49 Total: -73.83 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.38 Total: -40.11 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.88 Total: 48.40 kcal Total: -83.44 4.04 -79.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609082.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.961 kcal (2) G-P(sol) polarization free energy of solvation -83.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds