Wall clock time and date at job start Tue Mar 31 2020 05:31:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48498 * 109.46802 * 270.00159 * 3 2 1 5 5 H 1.48502 * 109.46977 * 29.99453 * 3 2 1 6 6 H 1.48494 * 109.47494 * 150.00181 * 3 2 1 7 7 C 1.37884 * 119.99981 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46919 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47340 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47340 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.46925 * 180.02562 * 12 11 10 14 14 O 1.21279 * 120.00072 * 0.02562 * 13 12 11 15 15 N 1.34777 * 119.99762 * 179.97438 * 13 12 11 16 16 C 1.46925 * 120.62933 * 0.02562 * 15 13 12 17 17 C 1.53200 * 108.77464 * 126.36718 * 16 15 13 18 18 C 1.53039 * 109.31274 * 54.63376 * 17 16 15 19 19 C 1.53040 * 109.53639 * 298.63748 * 18 17 16 20 20 H 1.08997 * 109.49536 * 301.40789 * 19 18 17 21 21 C 1.50705 * 109.49688 * 181.35262 * 19 18 17 22 22 O 1.20829 * 119.99456 * 240.00105 * 21 19 18 23 23 O 1.34223 * 120.00082 * 59.99424 * 21 19 18 24 24 C 1.46927 * 120.63015 * 179.72067 * 15 13 12 25 25 H 0.96996 * 119.99730 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47319 * 60.00523 * 9 7 2 27 27 H 1.08999 * 109.47742 * 299.99398 * 9 7 2 28 28 H 1.09004 * 109.46930 * 60.00101 * 10 9 7 29 29 H 1.09000 * 109.47312 * 300.00045 * 10 9 7 30 30 H 1.09004 * 109.46785 * 60.00308 * 11 10 9 31 31 H 1.09004 * 109.47694 * 300.00406 * 11 10 9 32 32 H 1.09000 * 109.46497 * 60.00561 * 12 11 10 33 33 H 1.09000 * 109.47312 * 300.00340 * 12 11 10 34 34 H 1.08998 * 109.59059 * 246.15003 * 16 15 13 35 35 H 1.09001 * 109.58869 * 6.43653 * 16 15 13 36 36 H 1.09003 * 109.49760 * 174.58671 * 17 16 15 37 37 H 1.09000 * 109.49553 * 294.67873 * 17 16 15 38 38 H 1.09003 * 109.45917 * 58.65267 * 18 17 16 39 39 H 1.08994 * 109.45641 * 178.61457 * 18 17 16 40 40 H 0.96706 * 117.00135 * 180.02562 * 23 21 19 41 41 H 1.09000 * 109.58273 * 353.41870 * 24 15 13 42 42 H 1.08995 * 109.58417 * 113.84922 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 0.0012 12 6 2.4745 -6.1501 0.0018 13 6 1.7210 -7.4552 0.0018 14 8 0.5082 -7.4551 0.0009 15 7 2.3948 -8.6224 0.0018 16 6 3.8640 -8.6385 0.0024 17 6 4.3471 -9.5042 1.1704 18 6 3.7033 -10.8893 1.0740 19 6 2.1819 -10.7542 1.1697 20 1 1.9180 -10.2739 2.1119 21 6 1.5507 -12.1214 1.1081 22 8 0.7725 -12.3880 0.2231 23 8 1.8533 -13.0427 2.0361 24 6 1.6742 -9.9028 0.0080 25 1 -0.4849 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5568 0.8903 28 1 2.8719 -3.6043 0.8906 29 1 2.8719 -3.6044 -0.8894 30 1 0.8534 -5.0451 -0.8887 31 1 0.8538 -5.0447 0.8914 32 1 3.1010 -6.0918 0.8919 33 1 3.1013 -6.0928 -0.8881 34 1 4.2252 -9.0575 -0.9368 35 1 4.2406 -7.6222 0.1179 36 1 5.4317 -9.6032 1.1255 37 1 4.0628 -9.0356 2.1125 38 1 3.9679 -11.3471 0.1208 39 1 4.0645 -11.5151 1.8900 40 1 1.4237 -13.9053 1.9548 41 1 0.6065 -9.7205 0.1298 42 1 1.8529 -10.4271 -0.9307 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594609102.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:45 Heat of formation + Delta-G solvation = -158.550723 kcal Electronic energy + Delta-G solvation = -21979.434290 eV Core-core repulsion = 18537.173143 eV Total energy + Delta-G solvation = -3442.261147 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.11399 -39.97991 -37.61770 -36.54478 -34.92570 -33.48807 -32.60067 -31.78101 -29.71564 -26.44403 -25.50973 -24.75858 -22.40999 -22.18490 -20.72390 -20.00110 -19.13338 -18.38247 -17.37278 -16.74689 -16.24248 -16.11591 -15.80831 -15.67900 -14.90352 -14.46813 -14.40949 -14.22808 -13.90875 -13.47679 -13.24311 -13.08955 -12.59085 -12.20261 -12.02505 -11.96429 -11.77236 -11.60944 -11.48330 -11.41663 -11.13647 -10.97681 -10.80160 -10.53267 -10.49406 -10.38659 -9.79211 -9.60080 -9.21456 -8.97222 -8.90133 -8.29404 -5.94123 -3.96655 1.76102 2.35245 2.66911 2.99312 3.34678 3.40707 3.43738 4.06546 4.23099 4.33854 4.49296 4.53280 4.62215 4.77397 4.94013 5.01861 5.11924 5.27249 5.29438 5.35634 5.39848 5.41176 5.41819 5.52573 5.63211 5.76466 5.85720 6.04609 6.14194 6.22142 6.32643 6.55745 6.84900 7.02235 7.19227 7.25519 7.44563 7.75392 7.91529 8.07404 8.16925 8.49025 9.11153 9.66899 11.17233 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.041045 B = 0.002514 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.022560 B =11135.067796 C =11558.661139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.019 3.981 10 C -0.110 4.110 11 C -0.104 4.104 12 C -0.137 4.137 13 C 0.516 3.484 14 O -0.531 6.531 15 N -0.621 5.621 16 C 0.102 3.898 17 C -0.135 4.135 18 C -0.110 4.110 19 C -0.096 4.096 20 H 0.115 0.885 21 C 0.488 3.512 22 O -0.510 6.510 23 O -0.515 6.515 24 C 0.127 3.873 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.046 0.954 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.411 0.589 41 H 0.101 0.899 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.758 -26.778 3.281 29.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.018 4.018 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.176 4.176 13 C 0.305 3.695 14 O -0.406 6.406 15 N -0.356 5.356 16 C -0.021 4.021 17 C -0.173 4.173 18 C -0.148 4.148 19 C -0.116 4.116 20 H 0.132 0.868 21 C 0.329 3.671 22 O -0.398 6.398 23 O -0.327 6.327 24 C 0.003 3.997 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.270 0.730 41 H 0.120 0.880 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.909 -26.318 3.060 28.288 hybrid contribution 0.196 0.222 -0.004 0.296 sum 10.105 -26.096 3.056 28.151 Atomic orbital electron populations 1.69976 1.06053 1.26502 1.50935 1.25049 0.94841 0.99235 0.95487 0.86610 0.79811 0.83614 0.78042 1.20715 1.21267 1.19930 1.21281 0.92964 0.91198 1.50383 0.92760 1.19097 0.94071 0.91269 0.97327 1.21644 0.99064 0.93972 1.00036 1.21477 0.97046 0.92703 1.03016 1.21828 1.00124 0.91816 1.03859 1.21174 0.88242 0.85292 0.74743 1.90712 1.14181 1.87111 1.48574 1.48176 1.06802 1.05500 1.75128 1.21836 0.79508 1.02064 0.98694 1.21950 1.00986 0.94854 0.99517 1.21528 0.91318 0.98434 1.03538 1.21344 0.97516 0.89363 1.03371 0.86755 1.23270 0.78762 0.86865 0.78198 1.90762 1.33606 1.80199 1.35188 1.84521 1.68470 1.26907 1.52797 1.21204 0.98778 0.83274 0.96409 0.93044 0.96594 0.96584 0.93494 0.93470 0.91756 0.91798 0.89052 0.89053 0.91056 0.88651 0.89684 0.90731 0.91007 0.90036 0.72990 0.88019 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 10 C -0.11 -2.24 5.15 -26.73 -0.14 -2.38 16 11 C -0.10 -1.86 4.50 -26.73 -0.12 -1.98 16 12 C -0.14 -1.78 4.05 -27.88 -0.11 -1.90 16 13 C 0.52 7.27 7.70 -10.98 -0.08 7.18 16 14 O -0.53 -9.80 15.40 5.56 0.09 -9.72 16 15 N -0.62 -6.49 2.98 -173.05 -0.52 -7.00 16 16 C 0.10 0.69 6.35 -3.71 -0.02 0.66 16 17 C -0.13 -0.69 6.08 -26.61 -0.16 -0.85 16 18 C -0.11 -0.60 5.11 -26.69 -0.14 -0.74 16 19 C -0.10 -0.74 2.76 -91.89 -0.25 -1.00 16 20 H 0.11 0.88 8.14 -51.93 -0.42 0.45 16 21 C 0.49 4.15 7.63 36.01 0.27 4.43 16 22 O -0.51 -6.06 16.68 -18.75 -0.31 -6.37 16 23 O -0.52 -3.03 13.30 -39.24 -0.52 -3.55 16 24 C 0.13 1.31 5.05 -3.95 -0.02 1.29 16 25 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.06 1.22 8.10 -51.93 -0.42 0.80 16 32 H 0.09 1.00 7.70 -51.93 -0.40 0.60 16 33 H 0.09 1.02 7.94 -51.93 -0.41 0.61 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.10 0.58 5.93 -51.93 -0.31 0.27 16 36 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 40 H 0.41 0.80 9.10 45.56 0.41 1.21 16 41 H 0.10 1.32 7.01 -51.93 -0.36 0.96 16 42 H 0.08 0.77 7.94 -51.93 -0.41 0.36 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -36.33 345.64 -7.75 -44.08 By element: Atomic # 1 Polarization: 2.14 SS G_CDS: -6.09 Total: -3.95 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -1.33 Total: -8.70 kcal Atomic # 7 Polarization: -34.12 SS G_CDS: 0.22 Total: -33.90 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.75 Total: -19.64 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -36.33 -7.75 -44.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609102.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.469 kcal (2) G-P(sol) polarization free energy of solvation -36.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds