Wall clock time and date at job start Tue Mar 31 2020 05:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.46962 * 2 1 4 4 C 1.50703 * 110.02254 * 44.82469 * 3 2 1 5 5 O 1.21296 * 119.99683 * 106.68103 * 4 3 2 6 6 N 1.34781 * 120.00049 * 286.69183 * 4 3 2 7 7 C 1.37099 * 119.99908 * 179.80118 * 6 4 3 8 8 H 1.07998 * 119.99962 * 201.25184 * 7 6 4 9 9 C 1.38946 * 119.99662 * 21.25377 * 7 6 4 10 10 N 1.31415 * 120.00702 * 16.76569 * 9 7 6 11 11 Si 1.86810 * 119.99786 * 196.76141 * 9 7 6 12 12 H 1.48501 * 109.46762 * 59.99840 * 11 9 7 13 13 H 1.48495 * 109.47061 * 180.02562 * 11 9 7 14 14 H 1.48505 * 109.46820 * 300.00410 * 11 9 7 15 15 C 1.46503 * 119.99634 * 359.79949 * 6 4 3 16 16 C 1.52997 * 109.46652 * 116.08355 * 15 6 4 17 17 C 1.50702 * 109.46845 * 184.14419 * 16 15 6 18 18 O 1.20830 * 120.00113 * 0.02562 * 17 16 15 19 19 O 1.34229 * 120.00224 * 180.02562 * 17 16 15 20 20 C 1.54266 * 110.03448 * 283.38505 * 3 2 1 21 21 C 1.54889 * 104.19909 * 217.10970 * 20 3 2 22 22 C 1.54887 * 102.75028 * 37.93529 * 21 20 3 23 23 C 1.53879 * 110.03468 * 166.21714 * 3 2 1 24 24 H 1.09002 * 109.47356 * 47.97220 * 1 2 3 25 25 H 1.09002 * 109.47385 * 287.97102 * 1 2 3 26 26 H 1.09001 * 109.47161 * 167.97491 * 1 2 3 27 27 H 1.08997 * 109.46944 * 119.99843 * 2 1 3 28 28 H 1.09001 * 109.47209 * 240.00150 * 2 1 3 29 29 H 0.96997 * 120.00226 * 184.99581 * 10 9 7 30 30 H 1.09001 * 109.46297 * 236.07988 * 15 6 4 31 31 H 1.08995 * 109.47101 * 356.08342 * 15 6 4 32 32 H 1.08995 * 109.47351 * 304.14751 * 16 15 6 33 33 H 1.09001 * 109.47208 * 64.14873 * 16 15 6 34 34 H 0.96696 * 117.00539 * 180.02562 * 19 17 16 35 35 H 1.09005 * 110.48618 * 335.78516 * 20 3 2 36 36 H 1.09001 * 110.49269 * 98.42916 * 20 3 2 37 37 H 1.09002 * 110.75386 * 279.62517 * 21 20 3 38 38 H 1.08996 * 110.75883 * 156.25387 * 21 20 3 39 39 H 1.08996 * 110.49152 * 203.38152 * 22 21 20 40 40 H 1.09000 * 110.48208 * 80.74044 * 22 21 20 41 41 H 1.08997 * 110.03656 * 238.57117 * 23 3 2 42 42 H 1.09003 * 110.02607 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.2650 2.2637 0.9982 5 8 1.7855 2.6004 2.0407 6 7 -0.0063 2.6238 0.7324 7 6 -0.7126 3.3674 1.6423 8 1 -1.7922 3.3714 1.6146 9 6 -0.0392 4.1159 2.5999 10 7 1.2384 4.3828 2.4466 11 14 -0.9502 4.7430 4.1055 12 1 -1.4965 3.5920 4.8684 13 1 -0.0142 5.5091 4.9669 14 1 -2.0644 5.6266 3.6774 15 6 -0.6334 2.2205 -0.5287 16 6 -1.8110 1.2882 -0.2373 17 6 -2.3926 0.7926 -1.5363 18 8 -1.9140 1.1482 -2.5872 19 8 -3.4423 -0.0440 -1.5258 20 6 1.8997 2.0526 -1.4099 21 6 3.1607 2.9381 -1.5678 22 6 4.2580 2.0982 -0.8683 23 6 3.5394 1.4715 0.3444 24 1 -0.3634 0.6880 -0.7634 25 1 -0.3634 0.3171 0.9775 26 1 -0.3633 -1.0051 -0.2141 27 1 1.8933 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.7255 4.8423 3.1484 30 1 -0.9919 3.1051 -1.0552 31 1 0.0974 1.7003 -1.1478 32 1 -1.4652 0.4397 0.3531 33 1 -2.5751 1.8309 0.3192 34 1 -3.7803 -0.3350 -2.3837 35 1 1.8880 1.2674 -2.1659 36 1 0.9967 2.6596 -1.4750 37 1 3.0263 3.8949 -1.0633 38 1 3.3997 3.0857 -2.6210 39 1 5.0760 2.7383 -0.5380 40 1 4.6271 1.3203 -1.5368 41 1 3.7067 2.0801 1.2330 42 1 3.9038 0.4578 0.5111 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595365029.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:58 Heat of formation + Delta-G solvation = 32.904875 kcal Electronic energy + Delta-G solvation = -25139.722466 eV Core-core repulsion = 21705.763456 eV Total energy + Delta-G solvation = -3433.959009 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.27147 -39.56507 -36.57114 -36.13865 -35.43844 -32.91695 -31.25451 -30.65977 -28.31624 -27.03606 -25.15613 -23.98203 -22.51275 -21.16243 -20.59191 -19.88376 -18.40264 -17.79852 -16.51810 -16.34280 -15.64610 -15.26541 -14.99332 -14.77983 -14.31967 -13.74318 -13.64003 -13.45852 -13.20657 -12.83381 -12.53469 -12.37308 -12.06564 -11.56164 -11.39578 -11.27359 -11.04297 -10.93353 -10.70280 -10.54221 -10.47033 -10.41920 -10.31299 -10.09611 -9.98819 -9.73910 -9.69462 -9.36668 -9.17306 -8.92353 -7.82269 -6.85603 -5.38146 -3.68270 2.43165 3.24531 3.37970 3.42576 3.43965 4.39282 4.59851 4.99749 5.13477 5.19998 5.31480 5.34123 5.41922 5.48659 5.61747 5.66947 5.75047 5.87966 5.97067 6.05967 6.12243 6.21521 6.24079 6.25965 6.29981 6.35240 6.40420 6.48364 6.55187 6.57437 6.65419 6.69245 6.77078 6.80224 6.87536 6.98876 7.17232 7.54620 8.07932 8.26450 9.10152 9.29655 9.80281 10.60564 11.04215 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.012170 B = 0.009769 C = 0.006184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.266832 B = 2865.470185 C = 4526.601035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.104 4.104 3 C -0.070 4.070 4 C 0.400 3.600 5 O -0.466 6.466 6 N -0.447 5.447 7 C -0.319 4.319 8 H 0.084 0.916 9 C 0.001 3.999 10 N -0.737 5.737 11 Si 0.916 3.084 12 H -0.283 1.283 13 H -0.289 1.289 14 H -0.282 1.282 15 C 0.084 3.916 16 C -0.191 4.191 17 C 0.481 3.519 18 O -0.524 6.524 19 O -0.520 6.520 20 C -0.141 4.141 21 C -0.120 4.120 22 C -0.120 4.120 23 C -0.108 4.108 24 H 0.126 0.874 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.253 0.747 30 H 0.057 0.943 31 H 0.131 0.869 32 H 0.163 0.837 33 H 0.103 0.897 34 H 0.402 0.598 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.113 -7.666 -7.756 11.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.142 4.142 3 C -0.073 4.073 4 C 0.188 3.812 5 O -0.337 6.337 6 N -0.168 5.168 7 C -0.446 4.446 8 H 0.101 0.899 9 C -0.209 4.209 10 N -0.382 5.382 11 Si 0.745 3.255 12 H -0.209 1.209 13 H -0.215 1.215 14 H -0.208 1.208 15 C -0.039 4.039 16 C -0.228 4.228 17 C 0.324 3.676 18 O -0.413 6.413 19 O -0.332 6.332 20 C -0.178 4.178 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.145 4.145 24 H 0.143 0.857 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.148 0.852 32 H 0.180 0.820 33 H 0.121 0.879 34 H 0.260 0.740 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.376 -7.146 -7.049 10.131 hybrid contribution -0.749 0.027 0.104 0.757 sum -2.125 -7.119 -6.944 10.169 Atomic orbital electron populations 1.24773 0.96583 1.02802 1.05498 1.21649 0.96403 0.95282 1.00841 1.21269 0.96030 0.95070 0.94973 1.19194 0.81978 0.89382 0.90630 1.90527 1.69961 1.45937 1.27252 1.43255 1.12150 1.47082 1.14265 1.19220 0.90878 1.24393 1.10144 0.89862 1.24858 0.95076 1.00435 1.00563 1.70391 1.06989 1.27914 1.32868 0.86157 0.78735 0.78441 0.82196 1.20941 1.21518 1.20765 1.22510 0.94223 0.96917 0.90291 1.23862 1.00604 1.05251 0.93104 1.23910 0.76480 0.74639 0.92559 1.90694 1.60148 1.56067 1.34354 1.84593 1.47120 1.60951 1.40505 1.23195 0.99444 0.99239 0.95960 1.22444 0.95003 0.99259 0.99063 1.22307 0.97703 0.98488 0.97255 1.22142 0.92850 1.00244 0.99304 0.85654 0.89592 0.94030 0.92469 0.92705 0.93523 0.92458 0.85191 0.82030 0.87904 0.73990 0.92153 0.89143 0.91078 0.92625 0.92445 0.92779 0.89400 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.96 5.29 37.16 0.20 -3.76 16 2 C -0.10 -1.78 4.90 -26.74 -0.13 -1.91 16 3 C -0.07 -1.37 0.61 -154.54 -0.09 -1.46 16 4 C 0.40 9.79 5.38 -10.98 -0.06 9.73 16 5 O -0.47 -13.36 10.67 5.54 0.06 -13.30 16 6 N -0.45 -10.55 2.09 -158.49 -0.33 -10.88 16 7 C -0.32 -8.29 9.28 -14.93 -0.14 -8.43 16 8 H 0.08 2.03 7.11 -52.49 -0.37 1.65 16 9 C 0.00 0.02 4.73 -17.47 -0.08 -0.07 16 10 N -0.74 -21.46 9.29 55.50 0.52 -20.94 16 11 Si 0.92 21.57 29.59 -169.99 -5.03 16.54 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.08 1.62 2.36 -4.04 -0.01 1.61 16 16 C -0.19 -3.10 4.53 -27.88 -0.13 -3.23 16 17 C 0.48 7.08 7.55 36.01 0.27 7.35 16 18 O -0.52 -8.85 16.59 -18.75 -0.31 -9.16 16 19 O -0.52 -6.03 13.42 -39.26 -0.53 -6.56 16 20 C -0.14 -2.53 4.28 -25.07 -0.11 -2.64 16 21 C -0.12 -2.07 6.91 -24.74 -0.17 -2.24 16 22 C -0.12 -1.97 6.83 -25.07 -0.17 -2.14 16 23 C -0.11 -2.04 6.00 -25.61 -0.15 -2.20 16 24 H 0.13 2.08 1.17 -141.37 -0.17 1.91 16 25 H 0.09 1.59 5.32 -51.93 -0.28 1.31 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.99 7.99 -51.93 -0.41 0.58 16 28 H 0.05 0.82 7.76 -51.93 -0.40 0.42 16 29 H 0.25 7.20 8.32 -40.82 -0.34 6.86 16 30 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.13 2.38 1.81 -51.93 -0.09 2.28 16 32 H 0.16 2.56 3.32 -107.06 -0.36 2.20 16 33 H 0.10 1.67 7.32 -51.93 -0.38 1.29 16 34 H 0.40 2.79 9.10 45.56 0.41 3.20 16 35 H 0.06 0.96 7.61 -51.93 -0.40 0.56 16 36 H 0.09 1.74 4.51 -51.93 -0.23 1.51 16 37 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.09 1.97 6.51 -51.93 -0.34 1.64 16 42 H 0.05 0.88 7.60 -51.93 -0.39 0.49 16 LS Contribution 305.91 15.07 4.61 4.61 Total: -1.00 -32.00 305.91 -6.87 -38.87 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.08 Total: 10.22 kcal Atomic # 6 Polarization: -8.61 SS G_CDS: -0.78 Total: -9.39 kcal Atomic # 7 Polarization: -32.01 SS G_CDS: 0.18 Total: -31.83 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.78 Total: -29.02 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -32.00 -6.87 -38.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595365029.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.779 kcal (2) G-P(sol) polarization free energy of solvation -32.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds