Wall clock time and date at job start Tue Mar 31 2020 06:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.46912 * 2 1 4 4 H 1.08991 * 109.47184 * 54.99381 * 3 2 1 5 5 C 1.53001 * 109.46630 * 294.99498 * 3 2 1 6 6 C 1.53001 * 109.46840 * 180.02562 * 5 3 2 7 7 C 1.52992 * 109.47567 * 60.00111 * 6 5 3 8 8 C 1.53001 * 109.46950 * 299.99822 * 7 6 5 9 9 C 1.52998 * 109.46810 * 174.99825 * 3 2 1 10 10 H 1.08999 * 109.47855 * 60.00111 * 9 3 2 11 11 C 1.50695 * 109.47378 * 299.99394 * 9 3 2 12 12 O 1.21290 * 119.99864 * 347.62518 * 11 9 3 13 13 N 1.34772 * 120.00234 * 167.62161 * 11 9 3 14 14 C 1.37101 * 119.99882 * 357.49567 * 13 11 9 15 15 H 1.07998 * 119.99796 * 18.82033 * 14 13 11 16 16 C 1.38952 * 119.99826 * 198.81810 * 14 13 11 17 17 N 1.31417 * 119.99906 * 23.66800 * 16 14 13 18 18 Si 1.86803 * 119.99876 * 203.65934 * 16 14 13 19 19 H 1.48498 * 109.46665 * 180.02562 * 18 16 14 20 20 H 1.48494 * 109.47384 * 300.00281 * 18 16 14 21 21 H 1.48494 * 109.46823 * 60.00650 * 18 16 14 22 22 C 1.46503 * 120.00306 * 177.49555 * 13 11 9 23 23 C 1.50694 * 109.47101 * 88.53462 * 22 13 11 24 24 O 1.20825 * 120.00361 * 0.02562 * 23 22 13 25 25 O 1.34231 * 120.00083 * 179.97438 * 23 22 13 26 26 H 1.09008 * 109.46999 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47929 * 300.00379 * 1 2 3 28 28 H 1.09004 * 109.47360 * 60.00577 * 1 2 3 29 29 H 1.08996 * 109.47650 * 239.99349 * 2 1 3 30 30 H 1.09007 * 109.46882 * 119.99328 * 2 1 3 31 31 H 1.08995 * 109.47324 * 60.00463 * 5 3 2 32 32 H 1.09006 * 109.47183 * 299.99826 * 5 3 2 33 33 H 1.09006 * 109.46700 * 299.99644 * 6 5 3 34 34 H 1.09004 * 109.46931 * 180.02562 * 6 5 3 35 35 H 1.08995 * 109.47135 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47247 * 59.99722 * 7 6 5 37 37 H 1.08992 * 109.47722 * 300.00142 * 8 7 6 38 38 H 1.08995 * 109.47324 * 179.97438 * 8 7 6 39 39 H 0.97006 * 119.99701 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.47350 * 208.53744 * 22 13 11 41 41 H 1.09003 * 109.47078 * 328.53892 * 22 13 11 42 42 H 0.96698 * 117.00556 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 0.8417 5 6 1.6351 2.1265 -1.3075 6 6 2.1456 3.5688 -1.3078 7 6 3.6704 3.5703 -1.1823 8 6 4.0751 2.8864 0.1252 9 6 3.5647 1.4444 0.1258 10 1 3.9995 0.9054 -0.7160 11 6 3.9634 0.7708 1.4135 12 8 3.1262 0.5344 2.2587 13 7 5.2501 0.4309 1.6260 14 6 6.1874 0.6513 0.6500 15 1 5.9837 1.3523 -0.1459 16 6 7.3995 -0.0274 0.6849 17 7 7.4933 -1.1723 1.3233 18 14 8.8953 0.6876 -0.1757 19 1 10.0543 -0.2223 0.0088 20 1 8.6088 0.8357 -1.6252 21 1 9.2119 2.0172 0.4048 22 6 5.6473 -0.1739 2.8998 23 6 5.4962 -1.6708 2.8139 24 8 5.0982 -2.1803 1.7932 25 8 5.8049 -2.4383 3.8710 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3635 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 0.5489 2.1252 -1.3971 32 1 2.0699 1.5874 -2.1492 33 1 1.7112 4.1081 -0.4660 34 1 1.8569 4.0562 -2.2390 35 1 4.0339 4.5978 -1.1821 36 1 4.1048 3.0309 -2.0240 37 1 3.6408 3.4256 0.9669 38 1 5.1614 2.8870 0.2144 39 1 8.3394 -1.6462 1.3473 40 1 6.6872 0.0748 3.1116 41 1 5.0120 0.2101 3.6981 42 1 5.6914 -3.3931 3.7684 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595441322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:30 Heat of formation + Delta-G solvation = -145.073935 kcal Electronic energy + Delta-G solvation = -24402.745373 eV Core-core repulsion = 20961.068623 eV Total energy + Delta-G solvation = -3441.676750 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.77140 -38.69273 -37.06945 -35.10369 -34.44025 -33.36529 -31.58460 -30.74928 -28.61037 -27.59301 -24.89136 -23.42177 -22.73429 -20.79829 -20.17449 -19.47205 -18.95299 -17.07823 -16.80906 -16.07816 -15.46996 -14.79179 -14.50349 -14.34647 -14.24594 -14.11950 -13.86070 -13.51145 -13.14289 -12.83855 -12.51851 -12.13326 -11.97614 -11.70500 -11.60871 -11.36710 -11.11085 -11.10125 -10.98254 -10.87705 -10.65192 -10.51051 -10.34707 -10.19262 -10.09517 -9.93236 -9.73026 -9.48561 -9.40302 -9.01068 -8.33437 -7.90742 -6.49579 -3.97394 3.08355 3.18106 3.19352 3.68132 3.80098 4.05473 4.34278 4.68984 5.01472 5.09839 5.14551 5.26116 5.50383 5.63407 5.71248 5.76946 5.88268 5.92554 5.97807 6.02004 6.09895 6.11572 6.22924 6.34055 6.39078 6.47004 6.51168 6.52315 6.54362 6.62129 6.63830 6.72696 6.76874 6.81245 7.07675 7.10039 7.40763 7.61679 7.74116 8.25469 9.00327 9.31556 9.41781 9.82050 10.57502 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015196 B = 0.007647 C = 0.005628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.197813 B = 3660.495573 C = 4973.540524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.125 4.125 3 C -0.062 4.062 4 H 0.071 0.929 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.117 4.117 8 C -0.113 4.113 9 C -0.081 4.081 10 H 0.088 0.912 11 C 0.478 3.522 12 O -0.599 6.599 13 N -0.430 5.430 14 C -0.339 4.339 15 H 0.109 0.891 16 C 0.038 3.962 17 N -0.861 5.861 18 Si 0.920 3.080 19 H -0.285 1.285 20 H -0.273 1.273 21 H -0.272 1.272 22 C 0.159 3.841 23 C 0.497 3.503 24 O -0.500 6.500 25 O -0.540 6.540 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.061 0.939 37 H 0.057 0.943 38 H 0.081 0.919 39 H 0.271 0.729 40 H 0.108 0.892 41 H 0.083 0.917 42 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.810 5.476 -2.161 7.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.162 4.162 3 C -0.080 4.080 4 H 0.090 0.910 5 C -0.152 4.152 6 C -0.156 4.156 7 C -0.154 4.154 8 C -0.150 4.150 9 C -0.102 4.102 10 H 0.107 0.893 11 C 0.268 3.732 12 O -0.485 6.485 13 N -0.148 5.148 14 C -0.466 4.466 15 H 0.126 0.874 16 C -0.168 4.168 17 N -0.498 5.498 18 Si 0.746 3.254 19 H -0.210 1.210 20 H -0.198 1.198 21 H -0.197 1.197 22 C 0.032 3.968 23 C 0.337 3.663 24 O -0.384 6.384 25 O -0.352 6.352 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.126 0.874 41 H 0.101 0.899 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -5.107 5.495 -1.964 7.755 hybrid contribution 1.036 -0.650 -0.641 1.381 sum -4.071 4.844 -2.605 6.843 Atomic orbital electron populations 1.21760 0.96899 1.00640 1.00928 1.21650 0.94798 0.96770 1.02998 1.20890 0.94074 0.96136 0.96944 0.91047 1.21656 1.00045 0.95458 0.98070 1.21540 0.96171 0.96958 1.00890 1.21529 0.95562 0.99995 0.98331 1.21550 1.02234 0.94183 0.97072 1.21002 0.95531 0.96286 0.97360 0.89338 1.20217 0.81556 0.82674 0.88725 1.90500 1.49997 1.60639 1.47405 1.43416 1.06599 1.52111 1.12717 1.19665 0.94935 1.24207 1.07808 0.87391 1.25231 0.99892 0.93838 0.97805 1.69823 1.26185 1.11017 1.42809 0.86101 0.80604 0.78956 0.79707 1.21017 1.19781 1.19733 1.20284 1.02369 0.86094 0.88011 1.23534 0.72100 0.90855 0.79811 1.90546 1.42988 1.74507 1.30394 1.84513 1.82803 1.23146 1.44703 0.93604 0.93091 0.93387 0.93096 0.89791 0.92196 0.92256 0.92314 0.92741 0.92430 0.91990 0.92406 0.90031 0.91840 0.87387 0.89893 0.75538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.67 37.15 0.36 -1.82 16 2 C -0.12 -2.28 5.15 -26.73 -0.14 -2.42 16 3 C -0.06 -1.07 1.33 -90.62 -0.12 -1.19 16 4 H 0.07 1.32 7.96 -51.93 -0.41 0.91 16 5 C -0.11 -1.62 4.96 -26.73 -0.13 -1.75 16 6 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 7 C -0.12 -1.62 5.92 -26.73 -0.16 -1.77 16 8 C -0.11 -1.91 4.88 -26.75 -0.13 -2.04 16 9 C -0.08 -1.58 1.21 -91.79 -0.11 -1.69 16 10 H 0.09 1.84 7.41 -51.93 -0.38 1.46 16 11 C 0.48 11.27 6.29 -10.99 -0.07 11.20 16 12 O -0.60 -15.23 13.89 5.55 0.08 -15.15 16 13 N -0.43 -10.53 2.11 -116.10 -0.25 -10.77 16 14 C -0.34 -8.28 8.37 -14.93 -0.13 -8.40 16 15 H 0.11 2.47 5.00 -52.49 -0.26 2.21 16 16 C 0.04 0.93 4.81 -17.46 -0.08 0.84 16 17 N -0.86 -22.28 8.81 55.50 0.49 -21.79 16 18 Si 0.92 19.04 29.61 -169.99 -5.03 14.01 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.58 16 20 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 C 0.16 3.75 5.21 -5.19 -0.03 3.73 16 23 C 0.50 12.18 6.29 36.00 0.23 12.40 16 24 O -0.50 -13.95 16.28 -18.75 -0.31 -14.25 16 25 O -0.54 -11.02 13.42 -39.26 -0.53 -11.55 16 26 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 27 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.63 6.57 -51.93 -0.34 0.29 16 29 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.08 1.87 5.88 -51.92 -0.31 1.56 16 31 H 0.06 0.77 6.56 -51.93 -0.34 0.43 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.46 5.98 -51.93 -0.31 1.15 16 39 H 0.27 6.77 8.31 -40.82 -0.34 6.43 16 40 H 0.11 2.52 6.91 -51.93 -0.36 2.16 16 41 H 0.08 1.85 7.50 -51.93 -0.39 1.46 16 42 H 0.39 6.27 9.10 45.56 0.41 6.68 16 LS Contribution 325.95 15.07 4.91 4.91 Total: -1.00 -30.13 325.95 -6.93 -37.07 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -5.63 Total: 12.11 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: -0.67 Total: 5.41 kcal Atomic # 7 Polarization: -32.81 SS G_CDS: 0.24 Total: -32.56 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.76 Total: -40.95 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.13 -6.93 -37.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595441322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.007 kcal (2) G-P(sol) polarization free energy of solvation -30.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds