Wall clock time and date at job start Tue Mar 31 2020 06:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47366 * 2 1 4 4 H 1.08999 * 109.46911 * 305.00278 * 3 2 1 5 5 C 1.53003 * 109.47098 * 64.99630 * 3 2 1 6 6 C 1.52999 * 109.47415 * 180.02562 * 5 3 2 7 7 C 1.52999 * 109.47228 * 300.00478 * 6 5 3 8 8 C 1.53003 * 109.47313 * 59.99459 * 7 6 5 9 9 C 1.52999 * 109.47415 * 300.00426 * 8 7 6 10 10 H 1.08998 * 109.46711 * 300.00056 * 9 8 7 11 11 C 1.50696 * 109.47342 * 179.97438 * 9 8 7 12 12 O 1.21299 * 119.99605 * 254.70838 * 11 9 8 13 13 N 1.34768 * 120.00138 * 74.70189 * 11 9 8 14 14 C 1.37103 * 120.00069 * 3.04650 * 13 11 9 15 15 H 1.08000 * 119.99636 * 231.70848 * 14 13 11 16 16 C 1.38944 * 119.99969 * 51.70432 * 14 13 11 17 17 N 1.31413 * 120.00135 * 201.78875 * 16 14 13 18 18 Si 1.86804 * 120.00076 * 21.79288 * 16 14 13 19 19 H 1.48496 * 109.47225 * 93.58508 * 18 16 14 20 20 H 1.48502 * 109.47073 * 213.58466 * 18 16 14 21 21 H 1.48500 * 109.46862 * 333.58274 * 18 16 14 22 22 C 1.46502 * 120.00114 * 183.04102 * 13 11 9 23 23 C 1.50697 * 109.46884 * 90.00514 * 22 13 11 24 24 O 1.20824 * 120.00122 * 359.97438 * 23 22 13 25 25 O 1.34237 * 119.99926 * 179.97438 * 23 22 13 26 26 H 1.09001 * 109.47687 * 299.99827 * 1 2 3 27 27 H 1.09006 * 109.47036 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47202 * 60.00131 * 1 2 3 29 29 H 1.08996 * 109.47202 * 119.99869 * 2 1 3 30 30 H 1.09001 * 109.47360 * 239.99737 * 2 1 3 31 31 H 1.08995 * 109.47237 * 300.00773 * 5 3 2 32 32 H 1.08999 * 109.46711 * 60.00526 * 5 3 2 33 33 H 1.08998 * 109.47032 * 180.02562 * 6 5 3 34 34 H 1.08999 * 109.46886 * 60.00468 * 6 5 3 35 35 H 1.09002 * 109.46793 * 300.00149 * 7 6 5 36 36 H 1.08993 * 109.47417 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.47237 * 179.97438 * 8 7 6 38 38 H 1.08999 * 109.46711 * 60.00065 * 8 7 6 39 39 H 0.97000 * 120.00259 * 179.97438 * 17 16 14 40 40 H 1.09005 * 109.47043 * 210.00039 * 22 13 11 41 41 H 1.08997 * 109.47315 * 329.99963 * 22 13 11 42 42 H 0.96693 * 117.00016 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1446 3.5692 1.3071 7 6 3.6694 3.5716 1.1811 8 6 4.0743 2.8875 -0.1262 9 6 3.5648 1.4448 -0.1260 10 1 3.9997 0.9061 0.7158 11 6 3.9630 0.7713 -1.4139 12 8 3.1333 0.5727 -2.2762 13 7 5.2409 0.3896 -1.6077 14 6 6.1653 0.5573 -0.6092 15 1 7.0983 1.0604 -0.8161 16 6 5.9018 0.0799 0.6688 17 7 6.5388 0.5829 1.7024 18 14 4.6422 -1.2769 0.9178 19 1 5.3273 -2.5943 0.9185 20 1 3.9506 -1.0779 2.2168 21 1 3.6473 -1.2368 -0.1839 22 6 5.6422 -0.2046 -2.8853 23 6 6.0894 0.8837 -3.8269 24 8 6.0740 2.0373 -3.4678 25 8 6.5049 0.5715 -5.0645 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 0.5489 2.1252 1.3969 32 1 2.0698 1.5875 2.1491 33 1 1.8566 4.0564 2.2387 34 1 1.7096 4.1080 0.4654 35 1 4.1044 3.0328 2.0229 36 1 4.0324 4.5993 1.1805 37 1 5.1605 2.8896 -0.2162 38 1 3.6393 3.4263 -0.9680 39 1 6.3546 0.2499 2.5946 40 1 6.4635 -0.9018 -2.7196 41 1 4.7962 -0.7365 -3.3203 42 1 6.7817 1.3035 -5.6324 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595441325.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:37 Heat of formation + Delta-G solvation = -137.384074 kcal Electronic energy + Delta-G solvation = -24831.834467 eV Core-core repulsion = 21390.491175 eV Total energy + Delta-G solvation = -3441.343292 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13765 -39.30292 -37.21995 -35.57663 -34.81859 -33.32516 -32.27495 -30.57587 -28.56384 -27.93967 -24.58650 -23.44453 -22.98108 -21.16378 -20.14100 -19.85377 -18.81004 -17.60184 -17.43561 -16.10729 -15.55906 -15.33619 -14.93866 -14.67447 -14.41483 -13.92325 -13.73685 -13.48228 -13.23394 -12.86883 -12.69642 -12.55807 -12.33984 -11.80165 -11.77494 -11.49364 -11.31109 -11.22175 -11.01346 -10.92348 -10.80037 -10.56563 -10.47426 -10.18268 -10.08752 -10.03784 -9.82408 -9.42415 -9.29716 -9.00311 -8.51836 -7.76991 -6.54181 -4.28336 2.83949 3.05819 3.18122 3.22742 3.34629 3.90137 4.05298 4.39827 4.81518 5.17292 5.22344 5.33221 5.54255 5.64969 5.73518 5.77883 5.86686 5.90016 5.99012 6.01109 6.05342 6.11961 6.14655 6.16347 6.20027 6.28874 6.45354 6.49807 6.57227 6.67409 6.68604 6.79126 6.87325 6.94215 6.96520 7.14048 7.24453 7.55469 7.62701 8.42705 8.46639 8.89882 9.18273 9.60435 10.53275 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.015036 B = 0.008252 C = 0.007724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.792926 B = 3392.316430 C = 3623.977383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C -0.069 4.069 4 H 0.074 0.926 5 C -0.115 4.115 6 C -0.118 4.118 7 C -0.115 4.115 8 C -0.095 4.095 9 C -0.086 4.086 10 H 0.095 0.905 11 C 0.513 3.487 12 O -0.587 6.587 13 N -0.460 5.460 14 C -0.350 4.350 15 H 0.097 0.903 16 C 0.083 3.917 17 N -0.847 5.847 18 Si 0.842 3.158 19 H -0.280 1.280 20 H -0.276 1.276 21 H -0.241 1.241 22 C 0.116 3.884 23 C 0.460 3.540 24 O -0.501 6.501 25 O -0.528 6.528 26 H 0.050 0.950 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.048 0.952 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.089 0.911 38 H 0.049 0.951 39 H 0.276 0.724 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.505 0.414 -2.364 6.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.167 4.167 3 C -0.088 4.088 4 H 0.093 0.907 5 C -0.152 4.152 6 C -0.156 4.156 7 C -0.152 4.152 8 C -0.132 4.132 9 C -0.107 4.107 10 H 0.112 0.888 11 C 0.304 3.696 12 O -0.471 6.471 13 N -0.182 5.182 14 C -0.477 4.477 15 H 0.115 0.885 16 C -0.125 4.125 17 N -0.480 5.480 18 Si 0.666 3.334 19 H -0.206 1.206 20 H -0.202 1.202 21 H -0.165 1.165 22 C -0.009 4.009 23 C 0.300 3.700 24 O -0.387 6.387 25 O -0.339 6.339 26 H 0.069 0.931 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.108 0.892 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.124 0.876 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -5.984 0.333 -2.216 6.390 hybrid contribution -0.099 -0.282 -0.005 0.300 sum -6.083 0.050 -2.221 6.476 Atomic orbital electron populations 1.21769 0.96537 1.00700 1.01282 1.21871 0.95279 0.97191 1.02349 1.21002 0.94464 0.95842 0.97514 0.90733 1.21643 0.99927 0.95883 0.97770 1.21555 0.96699 0.96511 1.00788 1.21501 0.94792 1.00064 0.98875 1.21249 1.03115 0.92592 0.96276 1.21207 0.94795 0.97967 0.96745 0.88760 1.20620 0.82279 0.77890 0.88774 1.90504 1.51286 1.58567 1.46714 1.43356 1.08547 1.55265 1.10992 1.18814 1.01956 1.39388 0.87513 0.88532 1.25477 0.95958 0.95745 0.95344 1.69751 1.40919 1.38334 0.99021 0.87497 0.82869 0.83249 0.79761 1.20642 1.20179 1.16482 1.20951 1.02364 0.91940 0.85688 1.24664 0.73327 0.91480 0.80502 1.90686 1.49806 1.22239 1.75947 1.84566 1.77988 1.44784 1.26585 0.93105 0.93552 0.92860 0.93354 0.89968 0.92139 0.92347 0.92716 0.92385 0.91606 0.92489 0.89207 0.93209 0.91328 0.86785 0.87580 0.74379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.67 37.15 0.36 -1.85 16 2 C -0.13 -2.44 3.84 -26.74 -0.10 -2.54 16 3 C -0.07 -1.33 1.33 -90.62 -0.12 -1.45 16 4 H 0.07 1.47 7.94 -51.93 -0.41 1.06 16 5 C -0.11 -1.87 4.96 -26.73 -0.13 -2.01 16 6 C -0.12 -1.82 5.92 -26.73 -0.16 -1.98 16 7 C -0.11 -2.03 5.92 -26.73 -0.16 -2.19 16 8 C -0.09 -1.98 5.09 -26.73 -0.14 -2.11 16 9 C -0.09 -1.88 0.76 -91.77 -0.07 -1.95 16 10 H 0.09 2.18 3.05 -51.93 -0.16 2.03 16 11 C 0.51 12.16 4.07 -10.99 -0.04 12.12 16 12 O -0.59 -14.53 13.95 5.54 0.08 -14.45 16 13 N -0.46 -10.77 1.43 -116.10 -0.17 -10.94 16 14 C -0.35 -8.82 8.03 -14.93 -0.12 -8.94 16 15 H 0.10 2.67 8.06 -52.49 -0.42 2.25 16 16 C 0.08 2.09 3.96 -17.47 -0.07 2.03 16 17 N -0.85 -22.07 13.96 55.50 0.77 -21.30 16 18 Si 0.84 19.29 23.11 -169.99 -3.93 15.36 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 21 H -0.24 -5.50 3.79 56.52 0.21 -5.29 16 22 C 0.12 2.31 5.99 -5.19 -0.03 2.28 16 23 C 0.46 8.99 8.40 36.00 0.30 9.29 16 24 O -0.50 -11.56 17.19 -18.75 -0.32 -11.89 16 25 O -0.53 -7.93 13.42 -39.28 -0.53 -8.46 16 26 H 0.05 0.69 6.57 -51.93 -0.34 0.35 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.92 6.36 -51.93 -0.33 0.59 16 30 H 0.08 1.75 5.21 -51.93 -0.27 1.48 16 31 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.09 2.13 6.93 -51.93 -0.36 1.77 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.28 6.79 8.31 -40.82 -0.34 6.45 16 40 H 0.11 2.00 8.04 -51.93 -0.42 1.59 16 41 H 0.11 2.01 7.38 -51.93 -0.38 1.63 16 42 H 0.40 4.19 9.10 45.56 0.41 4.61 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -29.73 317.66 -5.51 -35.24 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -5.73 Total: 10.94 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -0.48 Total: 0.70 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.61 Total: -32.23 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -0.77 Total: -34.80 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -3.93 Total: 15.36 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.73 -5.51 -35.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595441325.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.143 kcal (2) G-P(sol) polarization free energy of solvation -29.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds