Wall clock time and date at job start Tue Mar 31 2020 06:51:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46572 * 2 1 4 4 H 1.09005 * 109.46820 * 304.99842 * 3 2 1 5 5 C 1.52999 * 109.47468 * 64.99796 * 3 2 1 6 6 C 1.52997 * 109.47148 * 179.97438 * 5 3 2 7 7 C 1.53001 * 109.47180 * 300.00261 * 6 5 3 8 8 C 1.52997 * 109.47051 * 60.00126 * 7 6 5 9 9 C 1.53000 * 109.47036 * 299.99597 * 8 7 6 10 10 H 1.09003 * 109.46930 * 180.02562 * 9 8 7 11 11 C 1.50704 * 109.47387 * 300.00473 * 9 8 7 12 12 O 1.21286 * 119.99858 * 110.59781 * 11 9 8 13 13 N 1.34780 * 119.99582 * 290.59976 * 11 9 8 14 14 C 1.37097 * 120.00090 * 356.89680 * 13 11 9 15 15 H 1.07994 * 120.00230 * 16.21254 * 14 13 11 16 16 C 1.38951 * 119.99721 * 195.94123 * 14 13 11 17 17 N 1.31407 * 120.00341 * 24.25230 * 16 14 13 18 18 Si 1.86802 * 119.99907 * 204.26274 * 16 14 13 19 19 H 1.48498 * 109.47338 * 89.99657 * 18 16 14 20 20 H 1.48499 * 109.47164 * 209.99900 * 18 16 14 21 21 H 1.48501 * 109.47004 * 329.99380 * 18 16 14 22 22 C 1.46500 * 119.99685 * 176.89639 * 13 11 9 23 23 C 1.50697 * 109.47258 * 88.53740 * 22 13 11 24 24 O 1.20822 * 120.00041 * 359.97438 * 23 22 13 25 25 O 1.34229 * 120.00098 * 180.02562 * 23 22 13 26 26 H 1.09001 * 109.47761 * 299.99814 * 1 2 3 27 27 H 1.08996 * 109.47382 * 60.00856 * 1 2 3 28 28 H 1.09003 * 109.46794 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47067 * 240.00203 * 2 1 3 30 30 H 1.09000 * 109.46915 * 119.99314 * 2 1 3 31 31 H 1.09004 * 109.46696 * 59.99510 * 5 3 2 32 32 H 1.09000 * 109.46948 * 300.00598 * 5 3 2 33 33 H 1.09003 * 109.46921 * 180.02562 * 6 5 3 34 34 H 1.09005 * 109.46748 * 60.00287 * 6 5 3 35 35 H 1.08996 * 109.47096 * 299.99518 * 7 6 5 36 36 H 1.09003 * 109.47015 * 180.02562 * 7 6 5 37 37 H 1.08999 * 109.46655 * 180.02562 * 8 7 6 38 38 H 1.08992 * 109.47209 * 59.99902 * 8 7 6 39 39 H 0.96998 * 120.00491 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.46953 * 208.54387 * 22 13 11 41 41 H 1.09004 * 109.46766 * 328.53931 * 22 13 11 42 42 H 0.96700 * 116.99802 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9816 -0.8419 5 6 1.6351 2.1267 1.3073 6 6 2.1455 3.5690 1.3075 7 6 3.6704 3.5704 1.1820 8 6 4.0751 2.8863 -0.1253 9 6 3.5647 1.4440 -0.1255 10 1 3.8535 0.9565 -1.0567 11 6 4.1652 0.6985 1.0385 12 8 3.4646 0.3623 1.9697 13 7 5.4807 0.4054 1.0446 14 6 6.2601 0.7289 -0.0359 15 1 5.9010 1.4369 -0.7681 16 6 7.5144 0.1501 -0.1859 17 7 7.7762 -1.0066 0.3799 18 14 8.8286 1.0166 -1.1917 19 1 9.6203 1.9092 -0.3077 20 1 9.7264 0.0068 -1.8078 21 1 8.1837 1.8225 -2.2594 22 6 6.0778 -0.2588 2.2059 23 6 5.9709 -1.7528 2.0400 24 8 5.4491 -2.2153 1.0533 25 8 6.4545 -2.5698 2.9889 26 1 -0.3635 0.5138 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8901 31 1 2.0697 1.5876 2.1491 32 1 0.5488 2.1252 1.3969 33 1 1.8575 4.0562 2.2391 34 1 1.7111 4.1082 0.4656 35 1 4.1047 3.0312 2.0239 36 1 4.0340 4.5980 1.1826 37 1 5.1615 2.8870 -0.2144 38 1 3.6408 3.4255 -0.9671 39 1 8.6519 -1.4105 0.2755 40 1 7.1275 0.0237 2.2861 41 1 5.5496 0.0451 3.1096 42 1 6.3632 -3.5205 2.8379 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595441327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:40 Heat of formation + Delta-G solvation = -136.675315 kcal Electronic energy + Delta-G solvation = -24730.175011 eV Core-core repulsion = 21288.862453 eV Total energy + Delta-G solvation = -3441.312558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.02308 -38.74153 -36.71287 -34.99671 -34.47809 -33.36618 -31.64076 -30.64423 -28.46524 -27.61411 -24.92242 -23.36483 -22.54931 -20.87947 -20.24441 -19.72519 -18.83176 -16.92346 -16.63355 -15.94573 -15.51764 -14.90817 -14.57400 -14.34455 -14.27336 -14.05512 -13.71778 -13.28206 -12.91110 -12.76546 -12.68017 -12.06594 -11.91596 -11.84296 -11.45080 -11.39230 -11.29816 -11.00737 -10.91061 -10.81128 -10.55856 -10.46212 -10.28077 -10.14570 -10.12679 -9.99032 -9.49085 -9.41055 -9.27287 -9.00278 -8.15432 -7.91726 -6.51927 -3.96528 3.06817 3.17933 3.20037 3.67648 3.78216 4.04128 4.33421 4.70071 5.01745 5.21478 5.32833 5.35292 5.60683 5.66564 5.74365 5.87043 5.94943 6.05895 6.06336 6.14497 6.18826 6.22086 6.26303 6.37427 6.46211 6.49173 6.55916 6.60521 6.67042 6.70421 6.77467 6.79637 6.85100 6.95478 7.08090 7.23634 7.41325 7.65820 7.72066 8.25089 9.00026 9.29012 9.41201 9.82349 10.55858 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.016012 B = 0.007616 C = 0.006120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1748.299971 B = 3675.613687 C = 4573.739734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.127 4.127 3 C -0.058 4.058 4 H 0.057 0.943 5 C -0.133 4.133 6 C -0.114 4.114 7 C -0.116 4.116 8 C -0.114 4.114 9 C -0.085 4.085 10 H 0.086 0.914 11 C 0.485 3.515 12 O -0.592 6.592 13 N -0.430 5.430 14 C -0.338 4.338 15 H 0.110 0.890 16 C 0.037 3.963 17 N -0.863 5.863 18 Si 0.920 3.080 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.269 1.269 22 C 0.159 3.841 23 C 0.499 3.501 24 O -0.504 6.504 25 O -0.540 6.540 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.045 0.955 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.046 0.954 33 H 0.050 0.950 34 H 0.049 0.951 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.057 0.943 39 H 0.271 0.729 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.997 5.102 1.008 7.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.165 4.165 3 C -0.077 4.077 4 H 0.075 0.925 5 C -0.170 4.170 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.152 4.152 9 C -0.106 4.106 10 H 0.104 0.896 11 C 0.275 3.725 12 O -0.479 6.479 13 N -0.148 5.148 14 C -0.465 4.465 15 H 0.128 0.872 16 C -0.168 4.168 17 N -0.501 5.501 18 Si 0.747 3.253 19 H -0.202 1.202 20 H -0.211 1.211 21 H -0.193 1.193 22 C 0.032 3.968 23 C 0.339 3.661 24 O -0.389 6.389 25 O -0.351 6.351 26 H 0.072 0.928 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.105 0.895 31 H 0.126 0.874 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.102 0.898 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.129 0.871 41 H 0.100 0.900 42 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -5.262 5.102 1.239 7.434 hybrid contribution 0.930 -0.488 -0.940 1.409 sum -4.332 4.614 0.299 6.336 Atomic orbital electron populations 1.21779 0.97033 1.00589 1.00935 1.21696 0.94549 0.96952 1.03260 1.20854 0.93527 0.95845 0.97459 0.92468 1.22018 0.99203 0.95192 1.00592 1.21499 0.95935 0.97531 1.00172 1.21499 0.95816 0.99527 0.98556 1.21596 1.02374 0.93994 0.97206 1.21044 0.94932 0.96020 0.98620 0.89605 1.20054 0.81236 0.82866 0.88348 1.90360 1.59553 1.59004 1.38972 1.43451 1.06526 1.50039 1.14807 1.19755 0.97794 1.24740 1.04161 0.87210 1.25200 0.99303 0.94280 0.98028 1.69814 1.22662 1.12890 1.44737 0.86032 0.80576 0.79119 0.79619 1.20210 1.21119 1.19332 1.20324 1.01109 0.85512 0.89806 1.23582 0.72872 0.90407 0.79256 1.90549 1.42026 1.77017 1.29269 1.84519 1.77986 1.21826 1.50728 0.92822 0.93739 0.93621 0.93108 0.89478 0.87441 0.93559 0.93081 0.93246 0.91767 0.92916 0.89839 0.92464 0.91837 0.87114 0.89973 0.75533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.67 37.16 0.36 -1.79 16 2 C -0.13 -2.30 5.03 -26.73 -0.13 -2.43 16 3 C -0.06 -1.01 1.93 -90.62 -0.18 -1.18 16 4 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 5 C -0.13 -2.23 4.69 -26.73 -0.13 -2.35 16 6 C -0.11 -1.70 5.92 -26.73 -0.16 -1.86 16 7 C -0.12 -1.87 5.70 -26.73 -0.15 -2.03 16 8 C -0.11 -1.94 5.11 -26.73 -0.14 -2.08 16 9 C -0.09 -1.65 1.70 -91.77 -0.16 -1.80 16 10 H 0.09 1.76 7.51 -51.93 -0.39 1.37 16 11 C 0.48 10.99 5.08 -10.98 -0.06 10.94 16 12 O -0.59 -14.15 11.09 5.55 0.06 -14.08 16 13 N -0.43 -10.30 2.12 -116.10 -0.25 -10.55 16 14 C -0.34 -8.16 8.34 -14.93 -0.12 -8.28 16 15 H 0.11 2.50 4.89 -52.49 -0.26 2.25 16 16 C 0.04 0.90 4.82 -17.47 -0.08 0.82 16 17 N -0.86 -22.13 8.91 55.50 0.49 -21.63 16 18 Si 0.92 18.97 29.62 -169.99 -5.03 13.93 16 19 H -0.28 -5.62 7.11 56.52 0.40 -5.21 16 20 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 C 0.16 3.70 5.20 -5.19 -0.03 3.67 16 23 C 0.50 12.07 6.31 36.00 0.23 12.29 16 24 O -0.50 -13.93 16.51 -18.75 -0.31 -14.24 16 25 O -0.54 -10.89 13.42 -39.25 -0.53 -11.42 16 26 H 0.05 0.76 6.57 -51.93 -0.34 0.42 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.86 5.99 -51.93 -0.31 1.55 16 31 H 0.11 2.13 5.19 -51.93 -0.27 1.86 16 32 H 0.05 0.71 6.56 -51.93 -0.34 0.37 16 33 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.06 1.18 7.22 -51.93 -0.37 0.80 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.08 1.51 5.74 -51.93 -0.30 1.21 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 39 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 40 H 0.11 2.57 6.72 -51.93 -0.35 2.22 16 41 H 0.08 1.80 7.51 -51.93 -0.39 1.41 16 42 H 0.39 6.20 9.10 45.56 0.41 6.61 16 LS Contribution 318.94 15.07 4.81 4.81 Total: -1.00 -29.15 318.94 -6.92 -36.07 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: -5.42 Total: 13.22 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -0.74 Total: 3.90 kcal Atomic # 7 Polarization: -32.43 SS G_CDS: 0.25 Total: -32.18 kcal Atomic # 8 Polarization: -38.96 SS G_CDS: -0.77 Total: -39.74 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.93 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.15 -6.92 -36.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595441327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.609 kcal (2) G-P(sol) polarization free energy of solvation -29.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds