Wall clock time and date at job start Tue Mar 31 2020 05:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46974 * 2 1 4 4 C 1.53002 * 109.47267 * 184.46009 * 3 2 1 5 5 C 1.52991 * 109.47298 * 185.01422 * 4 3 2 6 6 C 1.50704 * 115.54977 * 306.28169 * 5 4 3 7 7 O 1.21290 * 119.99716 * 114.17634 * 6 5 4 8 8 N 1.34775 * 120.00044 * 293.89427 * 6 5 4 9 9 C 1.37094 * 119.99969 * 355.23614 * 8 6 5 10 10 H 1.07999 * 120.00531 * 323.12346 * 9 8 6 11 11 C 1.38956 * 119.99753 * 143.12337 * 9 8 6 12 12 N 1.31406 * 120.00185 * 337.92247 * 11 9 8 13 13 Si 1.86801 * 119.99573 * 157.92278 * 11 9 8 14 14 H 1.48505 * 109.47369 * 5.01121 * 13 11 9 15 15 H 1.48499 * 109.47149 * 125.01152 * 13 11 9 16 16 H 1.48500 * 109.46966 * 245.00971 * 13 11 9 17 17 C 1.46499 * 119.99819 * 175.23072 * 8 6 5 18 18 C 1.52999 * 109.46964 * 88.65051 * 17 8 6 19 19 C 1.50703 * 109.47158 * 180.02562 * 18 17 8 20 20 O 1.20822 * 119.99762 * 359.97438 * 19 18 17 21 21 O 1.34228 * 120.00033 * 179.97438 * 19 18 17 22 22 C 1.52995 * 117.50034 * 91.95142 * 5 4 3 23 23 C 1.53000 * 117.49883 * 160.61168 * 5 4 3 24 24 H 1.09000 * 109.46745 * 184.73469 * 1 2 3 25 25 H 1.08992 * 109.46893 * 304.73202 * 1 2 3 26 26 H 1.08998 * 109.46969 * 64.74016 * 1 2 3 27 27 H 1.08996 * 109.47227 * 240.00074 * 2 1 3 28 28 H 1.08998 * 109.46786 * 119.99848 * 2 1 3 29 29 H 1.09000 * 109.47232 * 64.46816 * 3 2 1 30 30 H 1.09001 * 109.47551 * 304.46511 * 3 2 1 31 31 H 1.09001 * 109.46555 * 65.01566 * 4 3 2 32 32 H 1.08993 * 109.47319 * 305.01735 * 4 3 2 33 33 H 0.96997 * 120.00146 * 179.97438 * 12 11 9 34 34 H 1.09002 * 109.46925 * 208.64327 * 17 8 6 35 35 H 1.09000 * 109.47214 * 328.64650 * 17 8 6 36 36 H 1.09005 * 109.47180 * 299.99583 * 18 17 8 37 37 H 1.09000 * 109.47483 * 59.99763 * 18 17 8 38 38 H 0.96694 * 117.00244 * 179.97438 * 21 19 18 39 39 H 1.09001 * 117.50211 * 214.99958 * 22 5 4 40 40 H 1.09000 * 117.49597 * 0.02562 * 22 5 4 41 41 H 1.09000 * 117.49795 * 359.97438 * 23 5 4 42 42 H 1.09001 * 117.49703 * 144.97395 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5659 1.4440 -0.1122 5 6 4.0851 2.8776 0.0134 6 6 3.4711 3.8765 -0.9334 7 8 2.7866 4.7799 -0.5017 8 7 3.6874 3.7693 -2.2594 9 6 4.5435 2.8120 -2.7391 10 1 5.4391 2.5638 -2.1889 11 6 4.2590 2.1611 -3.9333 12 7 3.0239 2.1179 -4.3801 13 14 5.6323 1.3473 -4.9036 14 1 6.8994 1.4312 -4.1337 15 1 5.2919 -0.0782 -5.1429 16 1 5.7973 2.0421 -6.2056 17 6 3.0075 4.6757 -3.1881 18 6 3.8530 5.9361 -3.3814 19 6 3.1533 6.8688 -4.3362 20 8 2.0880 6.5571 -4.8135 21 8 3.7136 8.0458 -4.6564 22 6 4.4671 3.3709 1.4103 23 6 5.5583 3.0658 0.3811 24 1 -0.3633 -1.0242 0.0848 25 1 -0.3633 0.5855 0.8445 26 1 -0.3633 0.4385 -0.9294 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7435 1.9327 0.9273 30 1 1.6128 1.9789 -0.8473 31 1 3.8595 1.0346 -1.0788 32 1 3.9895 0.8331 0.6849 33 1 2.8254 1.6638 -5.2139 34 1 2.8727 4.1779 -4.1484 35 1 2.0342 4.9498 -2.7811 36 1 3.9878 6.4340 -2.4211 37 1 4.8263 5.6620 -3.7883 38 1 3.2275 8.6101 -5.2730 39 1 4.2745 4.4178 1.6447 40 1 4.3490 2.6738 2.2399 41 1 6.1575 2.1682 0.5339 42 1 6.0835 3.9119 -0.0622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595656708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:17 Heat of formation + Delta-G solvation = -123.270524 kcal Electronic energy + Delta-G solvation = -23632.356573 eV Core-core repulsion = 20191.625290 eV Total energy + Delta-G solvation = -3440.731283 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.85796 -39.19019 -36.45965 -35.73128 -34.90393 -34.32391 -31.94340 -30.54430 -29.34766 -25.25955 -24.81441 -23.56533 -21.90581 -21.47774 -20.47976 -20.10694 -18.67605 -17.75064 -16.62803 -16.05603 -15.75973 -15.35894 -14.96775 -14.73231 -14.35924 -14.26638 -13.54543 -13.25953 -13.19603 -12.69342 -12.54168 -12.38812 -12.27557 -11.70330 -11.55410 -11.32039 -11.15434 -11.05304 -11.03754 -10.95436 -10.82776 -10.64045 -10.49777 -10.37460 -10.14687 -10.05553 -9.98975 -9.56391 -9.20738 -9.06365 -8.42057 -7.59817 -6.40810 -4.09442 2.66872 3.07177 3.20175 3.22331 3.41618 3.78745 4.09103 4.39371 4.77166 4.94442 5.18060 5.44189 5.49266 5.57520 5.60223 5.64647 5.69890 5.80658 5.93733 6.06763 6.09308 6.12950 6.18468 6.23145 6.33797 6.35527 6.41940 6.52480 6.58252 6.63580 6.66661 6.76717 6.82873 6.89314 7.07201 7.11875 7.29578 7.46527 7.85160 8.29774 8.35702 9.04862 9.46716 9.89386 10.60813 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.006754 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.423948 B = 4144.700022 C = 4785.865456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.120 4.120 3 C -0.111 4.111 4 C -0.069 4.069 5 C -0.108 4.108 6 C 0.508 3.492 7 O -0.602 6.602 8 N -0.432 5.432 9 C -0.337 4.337 10 H 0.095 0.905 11 C 0.046 3.954 12 N -0.850 5.850 13 Si 0.905 3.095 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.280 1.280 17 C 0.127 3.873 18 C -0.125 4.125 19 C 0.483 3.517 20 O -0.515 6.515 21 O -0.525 6.525 22 C -0.165 4.165 23 C -0.163 4.163 24 H 0.046 0.954 25 H 0.049 0.951 26 H 0.055 0.945 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.089 0.911 32 H 0.050 0.950 33 H 0.270 0.730 34 H 0.115 0.885 35 H 0.063 0.937 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.401 0.599 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.925 0.298 3.632 4.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.149 4.149 4 C -0.107 4.107 5 C -0.111 4.111 6 C 0.297 3.703 7 O -0.488 6.488 8 N -0.149 5.149 9 C -0.464 4.464 10 H 0.112 0.888 11 C -0.162 4.162 12 N -0.485 5.485 13 Si 0.731 3.269 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.206 1.206 17 C 0.003 3.997 18 C -0.164 4.164 19 C 0.325 3.675 20 O -0.402 6.402 21 O -0.336 6.336 22 C -0.203 4.203 23 C -0.201 4.201 24 H 0.065 0.935 25 H 0.068 0.932 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.108 0.892 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.132 0.868 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.122 0.878 38 H 0.258 0.742 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.386 0.304 3.789 4.488 hybrid contribution 0.385 -0.064 -1.115 1.181 sum 2.771 0.240 2.674 3.859 Atomic orbital electron populations 1.21754 0.96514 1.00614 1.01845 1.21485 0.95373 0.97600 1.01277 1.21470 0.95660 0.95771 1.01959 1.21007 0.95029 0.91938 1.02732 1.21115 0.97433 0.96751 0.95756 1.19472 0.82007 0.85419 0.83398 1.90527 1.43429 1.36905 1.77906 1.43327 1.40064 1.28394 1.03144 1.19462 1.02858 1.16729 1.07401 0.88754 1.25360 0.95934 0.96065 0.98794 1.69951 1.17357 1.39872 1.21347 0.86224 0.81767 0.78838 0.80037 1.19060 1.20765 1.20558 1.21163 0.93396 0.86969 0.98169 1.21868 1.01713 0.95347 0.97429 1.23816 0.83785 0.79880 0.80023 1.90700 1.22674 1.74768 1.52066 1.84592 1.54752 1.31189 1.63108 1.22961 1.03142 1.02051 0.92135 1.22894 0.91219 1.02868 1.03081 0.93498 0.93167 0.92607 0.91957 0.92958 0.92944 0.91349 0.89229 0.93085 0.91992 0.86765 0.91883 0.88473 0.87768 0.74169 0.88831 0.89217 0.88979 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.12 -1.88 5.93 -26.73 -0.16 -2.04 16 3 C -0.11 -2.05 4.85 -26.73 -0.13 -2.18 16 4 C -0.07 -1.28 4.96 -26.73 -0.13 -1.41 16 5 C -0.11 -2.11 1.06 -155.66 -0.16 -2.27 16 6 C 0.51 11.90 5.89 -10.98 -0.06 11.84 16 7 O -0.60 -15.60 16.36 5.55 0.09 -15.51 16 8 N -0.43 -10.25 2.53 -114.81 -0.29 -10.54 16 9 C -0.34 -7.89 7.18 -14.93 -0.11 -8.00 16 10 H 0.09 2.15 6.67 -52.49 -0.35 1.80 16 11 C 0.05 1.08 4.93 -17.47 -0.09 0.99 16 12 N -0.85 -21.56 11.48 55.50 0.64 -20.92 16 13 Si 0.90 18.59 29.61 -169.99 -5.03 13.56 16 14 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 15 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 16 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 17 C 0.13 2.99 4.23 -4.04 -0.02 2.98 16 18 C -0.12 -2.45 6.13 -27.88 -0.17 -2.62 16 19 C 0.48 8.92 8.33 36.01 0.30 9.22 16 20 O -0.51 -11.03 16.74 -18.75 -0.31 -11.34 16 21 O -0.52 -7.56 13.42 -39.25 -0.53 -8.09 16 22 C -0.17 -2.81 9.74 -26.70 -0.26 -3.07 16 23 C -0.16 -2.75 9.01 -26.69 -0.24 -2.99 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.51 7.60 -51.93 -0.39 1.12 16 31 H 0.09 1.83 6.82 -51.93 -0.35 1.48 16 32 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 34 H 0.11 2.91 5.47 -51.93 -0.28 2.63 16 35 H 0.06 1.60 7.50 -51.93 -0.39 1.21 16 36 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 37 H 0.10 1.94 8.14 -51.93 -0.42 1.52 16 38 H 0.40 3.83 9.10 45.56 0.41 4.24 16 39 H 0.09 1.67 8.00 -51.93 -0.42 1.26 16 40 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 41 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 42 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 LS Contribution 350.73 15.07 5.29 5.29 Total: -1.00 -29.16 350.73 -6.99 -36.15 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -5.98 Total: 12.76 kcal Atomic # 6 Polarization: -0.50 SS G_CDS: -0.86 Total: -1.36 kcal Atomic # 7 Polarization: -31.81 SS G_CDS: 0.35 Total: -31.46 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.75 Total: -34.94 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.16 -6.99 -36.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595656708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.122 kcal (2) G-P(sol) polarization free energy of solvation -29.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds