Wall clock time and date at job start Tue Mar 31 2020 05:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46974 * 2 1 4 4 C 1.53002 * 109.47267 * 184.46009 * 3 2 1 5 5 C 1.52991 * 109.47298 * 185.01422 * 4 3 2 6 6 C 1.50704 * 115.54977 * 306.28169 * 5 4 3 7 7 O 1.21290 * 119.99716 * 114.17634 * 6 5 4 8 8 N 1.34775 * 120.00044 * 293.89427 * 6 5 4 9 9 C 1.37094 * 119.99969 * 355.23614 * 8 6 5 10 10 H 1.07999 * 120.00531 * 323.12346 * 9 8 6 11 11 C 1.38956 * 119.99753 * 143.12337 * 9 8 6 12 12 N 1.31406 * 120.00185 * 337.92247 * 11 9 8 13 13 Si 1.86801 * 119.99573 * 157.92278 * 11 9 8 14 14 H 1.48505 * 109.47369 * 5.01121 * 13 11 9 15 15 H 1.48499 * 109.47149 * 125.01152 * 13 11 9 16 16 H 1.48500 * 109.46966 * 245.00971 * 13 11 9 17 17 C 1.46499 * 119.99819 * 175.23072 * 8 6 5 18 18 C 1.52999 * 109.46964 * 88.65051 * 17 8 6 19 19 C 1.50703 * 109.47158 * 180.02562 * 18 17 8 20 20 O 1.20822 * 119.99762 * 359.97438 * 19 18 17 21 21 O 1.34228 * 120.00033 * 179.97438 * 19 18 17 22 22 C 1.52995 * 117.50034 * 91.95142 * 5 4 3 23 23 C 1.53000 * 117.49883 * 160.61168 * 5 4 3 24 24 H 1.09000 * 109.46745 * 184.73469 * 1 2 3 25 25 H 1.08992 * 109.46893 * 304.73202 * 1 2 3 26 26 H 1.08998 * 109.46969 * 64.74016 * 1 2 3 27 27 H 1.08996 * 109.47227 * 240.00074 * 2 1 3 28 28 H 1.08998 * 109.46786 * 119.99848 * 2 1 3 29 29 H 1.09000 * 109.47232 * 64.46816 * 3 2 1 30 30 H 1.09001 * 109.47551 * 304.46511 * 3 2 1 31 31 H 1.09001 * 109.46555 * 65.01566 * 4 3 2 32 32 H 1.08993 * 109.47319 * 305.01735 * 4 3 2 33 33 H 0.96997 * 120.00146 * 179.97438 * 12 11 9 34 34 H 1.09002 * 109.46925 * 208.64327 * 17 8 6 35 35 H 1.09000 * 109.47214 * 328.64650 * 17 8 6 36 36 H 1.09005 * 109.47180 * 299.99583 * 18 17 8 37 37 H 1.09000 * 109.47483 * 59.99763 * 18 17 8 38 38 H 0.96694 * 117.00244 * 179.97438 * 21 19 18 39 39 H 1.09001 * 117.50211 * 214.99958 * 22 5 4 40 40 H 1.09000 * 117.49597 * 0.02562 * 22 5 4 41 41 H 1.09000 * 117.49795 * 359.97438 * 23 5 4 42 42 H 1.09001 * 117.49703 * 144.97395 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5659 1.4440 -0.1122 5 6 4.0851 2.8776 0.0134 6 6 3.4711 3.8765 -0.9334 7 8 2.7866 4.7799 -0.5017 8 7 3.6874 3.7693 -2.2594 9 6 4.5435 2.8120 -2.7391 10 1 5.4391 2.5638 -2.1889 11 6 4.2590 2.1611 -3.9333 12 7 3.0239 2.1179 -4.3801 13 14 5.6323 1.3473 -4.9036 14 1 6.8994 1.4312 -4.1337 15 1 5.2919 -0.0782 -5.1429 16 1 5.7973 2.0421 -6.2056 17 6 3.0075 4.6757 -3.1881 18 6 3.8530 5.9361 -3.3814 19 6 3.1533 6.8688 -4.3362 20 8 2.0880 6.5571 -4.8135 21 8 3.7136 8.0458 -4.6564 22 6 4.4671 3.3709 1.4103 23 6 5.5583 3.0658 0.3811 24 1 -0.3633 -1.0242 0.0848 25 1 -0.3633 0.5855 0.8445 26 1 -0.3633 0.4385 -0.9294 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.7435 1.9327 0.9273 30 1 1.6128 1.9789 -0.8473 31 1 3.8595 1.0346 -1.0788 32 1 3.9895 0.8331 0.6849 33 1 2.8254 1.6638 -5.2139 34 1 2.8727 4.1779 -4.1484 35 1 2.0342 4.9498 -2.7811 36 1 3.9878 6.4340 -2.4211 37 1 4.8263 5.6620 -3.7883 38 1 3.2275 8.6101 -5.2730 39 1 4.2745 4.4178 1.6447 40 1 4.3490 2.6738 2.2399 41 1 6.1575 2.1682 0.5339 42 1 6.0835 3.9119 -0.0622 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595656708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:16 Heat of formation + Delta-G solvation = -140.153888 kcal Electronic energy + Delta-G solvation = -23633.088690 eV Core-core repulsion = 20191.625290 eV Total energy + Delta-G solvation = -3441.463400 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.41190 -40.83361 -38.02442 -37.17644 -36.71932 -35.70779 -33.76942 -32.28393 -30.69740 -27.06560 -26.49302 -25.01857 -23.25461 -23.02591 -21.85029 -21.73188 -20.46311 -19.22964 -18.28039 -17.63082 -17.44871 -16.95192 -16.50219 -16.32362 -16.00782 -15.83396 -15.15140 -14.80548 -14.55836 -14.32666 -14.02203 -13.91200 -13.73177 -13.43243 -13.08779 -12.96598 -12.75059 -12.59691 -12.59100 -12.35297 -12.23516 -12.09384 -12.04304 -11.90515 -11.83536 -11.68722 -11.41800 -10.99300 -10.98264 -10.56079 -10.22749 -9.48744 -8.24137 -5.98058 1.15832 1.43007 1.52048 1.62841 1.94333 2.06071 2.38849 2.90552 3.10913 3.19836 3.79499 3.97379 4.07178 4.09377 4.15031 4.21479 4.30090 4.35713 4.47538 4.51665 4.70462 4.71731 4.83187 4.84472 4.91072 4.97551 5.00044 5.09764 5.17493 5.21120 5.33873 5.34767 5.36257 5.39679 5.54579 5.56486 5.60107 5.63597 6.01768 6.48281 6.97385 7.19681 7.63078 8.06244 8.78669 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.011981 B = 0.006754 C = 0.005849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2336.423948 B = 4144.700022 C = 4785.865456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.105 4.105 4 C -0.061 4.061 5 C -0.140 4.140 6 C 0.497 3.503 7 O -0.639 6.639 8 N -0.440 5.440 9 C -0.336 4.336 10 H 0.106 0.894 11 C 0.006 3.994 12 N -0.888 5.888 13 Si 0.969 3.031 14 H -0.249 1.249 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.132 3.868 18 C -0.116 4.116 19 C 0.494 3.506 20 O -0.550 6.550 21 O -0.506 6.506 22 C -0.150 4.150 23 C -0.145 4.145 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.032 0.968 27 H 0.050 0.950 28 H 0.082 0.918 29 H 0.054 0.946 30 H 0.016 0.984 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.268 0.732 34 H 0.093 0.907 35 H 0.028 0.972 36 H 0.099 0.901 37 H 0.119 0.881 38 H 0.427 0.573 39 H 0.079 0.921 40 H 0.121 0.879 41 H 0.122 0.878 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.214 -0.603 4.809 7.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.143 4.143 4 C -0.098 4.098 5 C -0.142 4.142 6 C 0.288 3.712 7 O -0.527 6.527 8 N -0.157 5.157 9 C -0.463 4.463 10 H 0.124 0.876 11 C -0.197 4.197 12 N -0.525 5.525 13 Si 0.793 3.207 14 H -0.172 1.172 15 H -0.211 1.211 16 H -0.210 1.210 17 C 0.007 3.993 18 C -0.155 4.155 19 C 0.338 3.662 20 O -0.441 6.441 21 O -0.320 6.320 22 C -0.187 4.187 23 C -0.182 4.182 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.083 0.917 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.111 0.889 35 H 0.047 0.953 36 H 0.117 0.883 37 H 0.137 0.863 38 H 0.288 0.712 39 H 0.097 0.903 40 H 0.139 0.861 41 H 0.140 0.860 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.706 -0.568 4.961 6.861 hybrid contribution -0.378 0.314 -1.472 1.552 sum 4.327 -0.254 3.490 5.565 Atomic orbital electron populations 1.21748 0.95821 1.02101 1.00962 1.21456 0.96045 0.95578 1.02113 1.21393 0.96118 0.97123 0.99635 1.20941 0.94597 0.91614 1.02675 1.21125 0.99949 0.96319 0.96841 1.20216 0.81571 0.85662 0.83755 1.90483 1.45046 1.38672 1.78497 1.43539 1.40004 1.28635 1.03502 1.19716 1.02760 1.16355 1.07466 0.87644 1.26122 0.97562 0.96577 0.99480 1.70083 1.19442 1.41291 1.21710 0.85236 0.79666 0.77365 0.78397 1.17245 1.21119 1.21029 1.20912 0.92902 0.88637 0.96835 1.21618 1.01496 0.94120 0.98218 1.23400 0.82908 0.80637 0.79265 1.90701 1.24153 1.75819 1.53416 1.84503 1.54294 1.29730 1.63473 1.23036 1.02016 1.01952 0.91724 1.23007 0.89814 1.03786 1.01601 0.91024 0.92497 0.94862 0.93081 0.89935 0.92754 0.96549 0.91700 0.89371 0.92250 0.88869 0.95322 0.88250 0.86308 0.71173 0.90253 0.86076 0.86000 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 9.91 71.98 0.71 -3.50 16 2 C -0.11 -3.47 5.93 30.60 0.18 -3.29 16 3 C -0.10 -3.92 4.85 30.59 0.15 -3.77 16 4 C -0.06 -2.16 4.96 30.59 0.15 -2.01 16 5 C -0.14 -5.33 1.06 -52.93 -0.06 -5.39 16 6 C 0.50 23.92 5.89 87.66 0.52 24.43 16 7 O -0.64 -34.48 16.36 -3.06 -0.05 -34.53 16 8 N -0.44 -21.54 2.53 -635.54 -1.60 -23.15 16 9 C -0.34 -15.79 7.18 84.04 0.60 -15.19 16 10 H 0.11 4.66 6.67 -2.91 -0.02 4.64 16 11 C 0.01 0.29 4.93 84.93 0.42 0.71 16 12 N -0.89 -46.80 11.48 21.66 0.25 -46.55 16 13 Si 0.97 37.81 29.61 68.60 2.03 39.84 16 14 H -0.25 -8.97 7.11 99.48 0.71 -8.27 16 15 H -0.29 -11.22 7.11 99.48 0.71 -10.52 16 16 H -0.28 -11.24 7.11 99.48 0.71 -10.53 16 17 C 0.13 6.52 4.23 86.38 0.37 6.88 16 18 C -0.12 -4.62 6.13 29.85 0.18 -4.44 16 19 C 0.49 18.27 8.33 71.24 0.59 18.86 16 20 O -0.55 -24.20 16.74 21.98 0.37 -23.83 16 21 O -0.51 -13.66 13.42 -51.39 -0.69 -14.35 16 22 C -0.15 -4.73 9.74 30.62 0.30 -4.43 16 23 C -0.14 -4.47 9.01 30.62 0.28 -4.20 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.02 0.75 7.60 -2.39 -0.02 0.73 16 31 H 0.06 2.62 6.82 -2.39 -0.02 2.61 16 32 H 0.09 2.47 8.08 -2.39 -0.02 2.45 16 33 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 34 H 0.09 5.03 5.47 -2.39 -0.01 5.01 16 35 H 0.03 1.56 7.50 -2.39 -0.02 1.55 16 36 H 0.10 3.93 8.14 -2.38 -0.02 3.91 16 37 H 0.12 4.37 8.14 -2.39 -0.02 4.35 16 38 H 0.43 7.14 9.10 -74.06 -0.67 6.46 16 39 H 0.08 2.74 8.00 -2.39 -0.02 2.72 16 40 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -66.56 350.73 5.04 -61.53 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: 0.34 Total: 36.38 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: 4.39 Total: 4.67 kcal Atomic # 7 Polarization: -68.34 SS G_CDS: -1.36 Total: -69.70 kcal Atomic # 8 Polarization: -72.34 SS G_CDS: -0.37 Total: -72.71 kcal Atomic # 14 Polarization: 37.81 SS G_CDS: 2.03 Total: 39.84 kcal Total: -66.56 5.04 -61.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595656708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.628 kcal (2) G-P(sol) polarization free energy of solvation -66.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds