Wall clock time and date at job start Tue Mar 31 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00358 * 2 1 4 4 H 1.48496 * 109.46996 * 275.51045 * 3 2 1 5 5 H 1.48505 * 109.46893 * 35.51194 * 3 2 1 6 6 H 1.48497 * 109.47270 * 155.50584 * 3 2 1 7 7 C 1.37880 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99643 * 343.56701 * 7 2 1 9 9 C 1.50695 * 120.00305 * 163.56529 * 7 2 1 10 10 C 1.53006 * 115.54859 * 324.42377 * 9 7 2 11 11 N 1.46895 * 109.47067 * 305.91381 * 10 9 7 12 12 C 1.46849 * 110.99935 * 167.23305 * 11 10 9 13 13 C 1.53035 * 109.52240 * 185.84243 * 12 11 10 14 14 C 1.53118 * 109.27684 * 300.81766 * 13 12 11 15 15 C 1.53001 * 109.52429 * 177.56379 * 14 13 12 16 16 H 1.09007 * 109.46631 * 300.12427 * 15 14 13 17 17 O 1.42898 * 109.47387 * 60.12226 * 15 14 13 18 18 C 1.50697 * 109.47441 * 180.12925 * 15 14 13 19 19 O 1.20820 * 120.00026 * 244.99972 * 18 15 14 20 20 O 1.34231 * 120.00127 * 64.99091 * 18 15 14 21 21 C 1.53122 * 109.21589 * 57.62349 * 14 13 12 22 22 C 1.46845 * 111.00098 * 291.44003 * 11 10 9 23 23 C 1.53006 * 117.50042 * 110.09231 * 9 7 2 24 24 C 1.53003 * 117.50100 * 178.75280 * 9 7 2 25 25 H 0.97003 * 119.99637 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47005 * 185.91317 * 10 9 7 27 27 H 1.08997 * 109.47134 * 65.91715 * 10 9 7 28 28 H 1.08999 * 109.46273 * 65.82320 * 12 11 10 29 29 H 1.08999 * 109.45991 * 305.85445 * 12 11 10 30 30 H 1.09002 * 109.50553 * 180.87871 * 13 12 11 31 31 H 1.09002 * 109.50686 * 60.75604 * 13 12 11 32 32 H 1.08999 * 109.52525 * 297.68795 * 14 13 12 33 33 H 0.96709 * 113.99551 * 60.00439 * 17 15 14 34 34 H 0.96700 * 116.99849 * 179.97438 * 20 18 15 35 35 H 1.09009 * 109.50015 * 62.31762 * 21 14 13 36 36 H 1.08991 * 109.50747 * 182.43225 * 21 14 13 37 37 H 1.09000 * 109.46546 * 294.17594 * 22 11 10 38 38 H 1.09002 * 109.45883 * 54.15040 * 22 11 10 39 39 H 1.08993 * 117.49868 * 215.00770 * 23 9 7 40 40 H 1.08998 * 117.49158 * 0.02562 * 23 9 7 41 41 H 1.09000 * 117.49860 * 359.97438 * 24 9 7 42 42 H 1.08996 * 117.49923 * 144.97489 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3803 2.1135 -1.3936 5 1 1.5097 2.6162 0.8133 6 1 3.6000 1.4093 0.5805 7 6 2.0045 -1.1941 0.0005 8 1 1.4975 -2.1102 0.2656 9 6 3.4653 -1.2210 -0.3687 10 6 3.8883 -0.2355 -1.4599 11 7 3.0463 -0.4292 -2.6479 12 6 3.2101 0.6804 -3.5957 13 6 2.2152 0.5203 -4.7474 14 6 2.4660 -0.8169 -5.4499 15 6 1.4354 -1.0104 -6.5641 16 1 0.4327 -1.0056 -6.1363 17 8 1.5537 0.0520 -7.5124 18 6 1.6813 -2.3282 -7.2526 19 8 2.0207 -2.3499 -8.4119 20 8 1.5234 -3.4778 -6.5778 21 6 2.3380 -1.9531 -4.4314 22 6 3.3283 -1.7204 -3.2880 23 6 4.4706 -1.5142 0.7468 24 6 4.1813 -2.5723 -0.3209 25 1 -0.4850 0.8401 0.0004 26 1 4.9320 -0.4096 -1.7220 27 1 3.7710 0.7844 -1.0938 28 1 4.2263 0.6741 -3.9900 29 1 3.0249 1.6250 -3.0845 30 1 2.3476 1.3355 -5.4588 31 1 1.1983 0.5402 -4.3554 32 1 3.4689 -0.8217 -5.8768 33 1 2.4224 0.1080 -7.9338 34 1 1.6923 -4.2977 -7.0619 35 1 1.3231 -1.9731 -4.0342 36 1 2.5581 -2.9037 -4.9171 37 1 4.3439 -1.7154 -3.6838 38 1 3.2289 -2.5194 -2.5533 39 1 5.4333 -1.0050 0.7033 40 1 4.0753 -1.6881 1.7476 41 1 3.5958 -3.4418 -0.0220 42 1 4.9534 -2.7594 -1.0671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601063261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:45 Heat of formation + Delta-G solvation = -102.259275 kcal Electronic energy + Delta-G solvation = -23959.272084 eV Core-core repulsion = 20519.451918 eV Total energy + Delta-G solvation = -3439.820167 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.79429 -38.93515 -37.41188 -36.50668 -35.75562 -32.95246 -32.03352 -30.46377 -28.60451 -26.26279 -24.76480 -23.08688 -22.42355 -21.32032 -21.26923 -19.63667 -18.91656 -18.34650 -17.72789 -16.47414 -16.11311 -16.02814 -15.48092 -15.01475 -14.45973 -14.23142 -14.00614 -13.78232 -13.36495 -13.10112 -12.98392 -12.71225 -12.34491 -12.13659 -11.92770 -11.76982 -11.63990 -11.39923 -10.89410 -10.76256 -10.68481 -10.54436 -10.46202 -10.40633 -10.03982 -9.90410 -9.65080 -9.34093 -9.12279 -8.58301 -8.17764 -7.47562 -6.01469 -3.89173 1.95393 2.80271 3.31223 3.44172 3.45860 4.00069 4.40445 4.52385 4.55945 4.80062 4.93398 4.96340 5.13918 5.33137 5.48172 5.52164 5.59967 5.68069 5.78187 5.86058 5.89740 5.96728 6.11311 6.15265 6.18455 6.23183 6.29365 6.38960 6.45969 6.49482 6.52146 6.67782 6.74974 6.76849 7.02054 7.17901 7.20087 7.70162 7.74589 7.84952 7.96109 8.62155 9.03172 9.68851 11.11582 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.005546 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.055764 B = 5047.124353 C = 5494.273547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.100 3.900 3 Si 0.881 3.119 4 H -0.273 1.273 5 H -0.306 1.306 6 H -0.271 1.271 7 C -0.468 4.468 8 H 0.071 0.929 9 C 0.024 3.976 10 C 0.085 3.915 11 N -0.503 5.503 12 C 0.048 3.952 13 C -0.101 4.101 14 C -0.111 4.111 15 C 0.123 3.877 16 H 0.142 0.858 17 O -0.530 6.530 18 C 0.455 3.545 19 O -0.519 6.519 20 O -0.501 6.501 21 C -0.115 4.115 22 C 0.065 3.935 23 C -0.214 4.214 24 C -0.195 4.195 25 H 0.261 0.739 26 H 0.014 0.986 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.077 0.923 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.382 0.618 34 H 0.405 0.595 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.013 0.987 38 H 0.092 0.908 39 H 0.063 0.937 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.090 -2.295 -12.049 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.104 4.104 3 Si 0.714 3.286 4 H -0.200 1.200 5 H -0.234 1.234 6 H -0.197 1.197 7 C -0.505 4.505 8 H 0.089 0.911 9 C 0.022 3.978 10 C -0.041 4.041 11 N -0.226 5.226 12 C -0.080 4.080 13 C -0.138 4.138 14 C -0.130 4.130 15 C 0.062 3.938 16 H 0.159 0.841 17 O -0.335 6.335 18 C 0.297 3.703 19 O -0.408 6.408 20 O -0.313 6.313 21 C -0.153 4.153 22 C -0.063 4.063 23 C -0.252 4.252 24 C -0.232 4.232 25 H 0.071 0.929 26 H 0.032 0.968 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.231 0.769 34 H 0.264 0.736 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.031 0.969 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.812 -1.720 -11.835 12.891 hybrid contribution 2.092 0.212 -0.740 2.229 sum 6.905 -1.507 -12.575 14.425 Atomic orbital electron populations 1.69968 1.06487 1.26784 1.49183 1.24710 0.94069 0.98509 0.93091 0.87080 0.79746 0.84278 0.77499 1.20009 1.23413 1.19741 1.20048 0.89651 0.95108 1.45647 0.91055 1.19301 0.94096 0.91814 0.92578 1.21883 0.91906 0.99511 0.90843 1.61660 1.55114 1.00638 1.05207 1.22200 0.96191 0.96114 0.93524 1.21509 1.01439 0.94822 0.96075 1.21854 0.97332 0.98751 0.95031 1.21734 1.03627 0.80415 0.87976 0.84098 1.86667 1.39554 1.48909 1.58412 1.24735 0.72684 0.87436 0.85446 1.90711 1.43798 1.88041 1.18259 1.84708 1.81903 1.17107 1.47558 1.21767 1.02388 0.96390 0.94710 1.22035 0.94727 0.93495 0.96028 1.23165 1.00748 1.05238 0.96072 1.22824 1.03620 0.94558 1.02225 0.92885 0.96758 0.91896 0.96254 0.90519 0.91386 0.90100 0.91239 0.76924 0.73577 0.89740 0.90501 0.96901 0.89003 0.91845 0.89693 0.90037 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 2 C 0.10 2.77 5.30 -17.82 -0.09 2.67 16 3 Si 0.88 21.50 24.00 -169.99 -4.08 17.42 16 4 H -0.27 -6.27 5.07 56.52 0.29 -5.98 16 5 H -0.31 -7.64 7.11 56.52 0.40 -7.24 16 6 H -0.27 -6.46 6.76 56.52 0.38 -6.08 16 7 C -0.47 -12.67 9.22 -34.44 -0.32 -12.99 16 8 H 0.07 2.12 8.06 -52.48 -0.42 1.70 16 9 C 0.02 0.53 0.92 -155.66 -0.14 0.39 16 10 C 0.09 1.79 3.73 -3.82 -0.01 1.78 16 11 N -0.50 -9.81 4.02 -234.67 -0.94 -10.76 16 12 C 0.05 0.81 5.45 -3.83 -0.02 0.79 16 13 C -0.10 -1.44 5.20 -26.65 -0.14 -1.58 16 14 C -0.11 -1.38 2.01 -90.49 -0.18 -1.56 16 15 C 0.12 1.43 3.09 -27.88 -0.09 1.34 16 16 H 0.14 1.61 8.14 -51.93 -0.42 1.19 16 17 O -0.53 -6.18 12.38 -55.14 -0.68 -6.86 16 18 C 0.45 5.30 7.50 36.00 0.27 5.57 16 19 O -0.52 -7.34 17.08 -25.46 -0.43 -7.77 16 20 O -0.50 -4.79 10.70 -39.26 -0.42 -5.21 16 21 C -0.11 -1.64 4.77 -26.65 -0.13 -1.77 16 22 C 0.07 1.10 5.22 -3.83 -0.02 1.08 16 23 C -0.21 -4.46 9.96 -26.69 -0.27 -4.73 16 24 C -0.19 -3.88 8.26 -26.69 -0.22 -4.10 16 25 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 26 H 0.01 0.28 8.04 -51.93 -0.42 -0.14 16 27 H 0.06 1.40 2.76 -51.93 -0.14 1.26 16 28 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 1.40 6.01 -51.93 -0.31 1.09 16 30 H 0.07 0.86 7.77 -51.93 -0.40 0.45 16 31 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 32 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.38 3.43 8.79 45.56 0.40 3.83 16 34 H 0.41 2.17 9.10 45.56 0.41 2.59 16 35 H 0.08 1.37 8.14 -51.92 -0.42 0.95 16 36 H 0.08 0.97 5.72 -51.93 -0.30 0.67 16 37 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 38 H 0.09 1.70 5.88 -51.93 -0.31 1.40 16 39 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.08 1.80 8.14 -51.93 -0.42 1.38 16 41 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 42 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 LS Contribution 323.54 15.07 4.88 4.88 Total: -1.00 -31.86 323.54 -7.25 -39.11 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -4.98 Total: 7.75 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -1.36 Total: -13.11 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: -0.17 Total: -36.21 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.54 Total: -19.84 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.08 Total: 17.42 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.86 -7.25 -39.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.146 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds