Wall clock time and date at job start Tue Mar 31 2020 05:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00358 * 2 1 4 4 H 1.48496 * 109.46996 * 275.51045 * 3 2 1 5 5 H 1.48505 * 109.46893 * 35.51194 * 3 2 1 6 6 H 1.48497 * 109.47270 * 155.50584 * 3 2 1 7 7 C 1.37880 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99643 * 343.56701 * 7 2 1 9 9 C 1.50695 * 120.00305 * 163.56529 * 7 2 1 10 10 C 1.53006 * 115.54859 * 324.42377 * 9 7 2 11 11 N 1.46895 * 109.47067 * 305.91381 * 10 9 7 12 12 C 1.46849 * 110.99935 * 167.23305 * 11 10 9 13 13 C 1.53035 * 109.52240 * 185.84243 * 12 11 10 14 14 C 1.53118 * 109.27684 * 300.81766 * 13 12 11 15 15 C 1.53001 * 109.52429 * 177.56379 * 14 13 12 16 16 H 1.09007 * 109.46631 * 300.12427 * 15 14 13 17 17 O 1.42898 * 109.47387 * 60.12226 * 15 14 13 18 18 C 1.50697 * 109.47441 * 180.12925 * 15 14 13 19 19 O 1.20820 * 120.00026 * 244.99972 * 18 15 14 20 20 O 1.34231 * 120.00127 * 64.99091 * 18 15 14 21 21 C 1.53122 * 109.21589 * 57.62349 * 14 13 12 22 22 C 1.46845 * 111.00098 * 291.44003 * 11 10 9 23 23 C 1.53006 * 117.50042 * 110.09231 * 9 7 2 24 24 C 1.53003 * 117.50100 * 178.75280 * 9 7 2 25 25 H 0.97003 * 119.99637 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47005 * 185.91317 * 10 9 7 27 27 H 1.08997 * 109.47134 * 65.91715 * 10 9 7 28 28 H 1.08999 * 109.46273 * 65.82320 * 12 11 10 29 29 H 1.08999 * 109.45991 * 305.85445 * 12 11 10 30 30 H 1.09002 * 109.50553 * 180.87871 * 13 12 11 31 31 H 1.09002 * 109.50686 * 60.75604 * 13 12 11 32 32 H 1.08999 * 109.52525 * 297.68795 * 14 13 12 33 33 H 0.96709 * 113.99551 * 60.00439 * 17 15 14 34 34 H 0.96700 * 116.99849 * 179.97438 * 20 18 15 35 35 H 1.09009 * 109.50015 * 62.31762 * 21 14 13 36 36 H 1.08991 * 109.50747 * 182.43225 * 21 14 13 37 37 H 1.09000 * 109.46546 * 294.17594 * 22 11 10 38 38 H 1.09002 * 109.45883 * 54.15040 * 22 11 10 39 39 H 1.08993 * 117.49868 * 215.00770 * 23 9 7 40 40 H 1.08998 * 117.49158 * 0.02562 * 23 9 7 41 41 H 1.09000 * 117.49860 * 359.97438 * 24 9 7 42 42 H 1.08996 * 117.49923 * 144.97489 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.3803 2.1135 -1.3936 5 1 1.5097 2.6162 0.8133 6 1 3.6000 1.4093 0.5805 7 6 2.0045 -1.1941 0.0005 8 1 1.4975 -2.1102 0.2656 9 6 3.4653 -1.2210 -0.3687 10 6 3.8883 -0.2355 -1.4599 11 7 3.0463 -0.4292 -2.6479 12 6 3.2101 0.6804 -3.5957 13 6 2.2152 0.5203 -4.7474 14 6 2.4660 -0.8169 -5.4499 15 6 1.4354 -1.0104 -6.5641 16 1 0.4327 -1.0056 -6.1363 17 8 1.5537 0.0520 -7.5124 18 6 1.6813 -2.3282 -7.2526 19 8 2.0207 -2.3499 -8.4119 20 8 1.5234 -3.4778 -6.5778 21 6 2.3380 -1.9531 -4.4314 22 6 3.3283 -1.7204 -3.2880 23 6 4.4706 -1.5142 0.7468 24 6 4.1813 -2.5723 -0.3209 25 1 -0.4850 0.8401 0.0004 26 1 4.9320 -0.4096 -1.7220 27 1 3.7710 0.7844 -1.0938 28 1 4.2263 0.6741 -3.9900 29 1 3.0249 1.6250 -3.0845 30 1 2.3476 1.3355 -5.4588 31 1 1.1983 0.5402 -4.3554 32 1 3.4689 -0.8217 -5.8768 33 1 2.4224 0.1080 -7.9338 34 1 1.6923 -4.2977 -7.0619 35 1 1.3231 -1.9731 -4.0342 36 1 2.5581 -2.9037 -4.9171 37 1 4.3439 -1.7154 -3.6838 38 1 3.2289 -2.5194 -2.5533 39 1 5.4333 -1.0050 0.7033 40 1 4.0753 -1.6881 1.7476 41 1 3.5958 -3.4418 -0.0220 42 1 4.9534 -2.7594 -1.0671 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063261.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:45 Heat of formation + Delta-G solvation = -126.728156 kcal Electronic energy + Delta-G solvation = -23960.333135 eV Core-core repulsion = 20519.451918 eV Total energy + Delta-G solvation = -3440.881217 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.73143 -40.23780 -38.61799 -37.63556 -36.84460 -34.18148 -34.13724 -31.69148 -29.80934 -27.95606 -26.40183 -24.32092 -23.66085 -22.89532 -22.26612 -20.81497 -20.76478 -19.24784 -18.64011 -18.23243 -17.39498 -17.12234 -16.94551 -16.27650 -15.75001 -15.65996 -15.35236 -14.97687 -14.85883 -14.68895 -14.30225 -13.94686 -13.78184 -13.54534 -13.21131 -13.03953 -12.71715 -12.60681 -12.50772 -12.31881 -12.12136 -12.01585 -11.85132 -11.58488 -11.49931 -11.33001 -11.16245 -11.09383 -10.73122 -10.33131 -10.17000 -8.87255 -8.15938 -6.05919 1.04902 1.36670 1.45526 1.52577 1.99198 2.48414 2.91166 3.14148 3.21013 3.53737 3.60694 3.79592 3.97443 4.10868 4.20678 4.22065 4.30441 4.39840 4.46717 4.49622 4.54776 4.60605 4.68461 4.77206 4.87785 4.92597 4.93440 5.05407 5.10676 5.12539 5.27307 5.31958 5.37807 5.52938 5.54921 5.55215 5.85361 6.38025 6.44385 6.48270 6.54112 6.88717 6.94210 7.54773 9.01034 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.021190 B = 0.005546 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.055764 B = 5047.124353 C = 5494.273547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.052 3.948 3 Si 0.937 3.063 4 H -0.253 1.253 5 H -0.318 1.318 6 H -0.258 1.258 7 C -0.467 4.467 8 H 0.024 0.976 9 C -0.006 4.006 10 C 0.090 3.910 11 N -0.533 5.533 12 C 0.047 3.953 13 C -0.096 4.096 14 C -0.098 4.098 15 C 0.129 3.871 16 H 0.138 0.862 17 O -0.538 6.538 18 C 0.464 3.536 19 O -0.544 6.544 20 O -0.500 6.500 21 C -0.108 4.108 22 C 0.066 3.934 23 C -0.207 4.207 24 C -0.171 4.171 25 H 0.260 0.740 26 H 0.039 0.961 27 H 0.050 0.950 28 H 0.043 0.957 29 H 0.058 0.942 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.394 0.606 34 H 0.425 0.575 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.035 0.965 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.808 -2.121 -13.809 16.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.147 4.147 3 Si 0.767 3.233 4 H -0.179 1.179 5 H -0.248 1.248 6 H -0.183 1.183 7 C -0.504 4.504 8 H 0.042 0.958 9 C -0.008 4.008 10 C -0.037 4.037 11 N -0.257 5.257 12 C -0.081 4.081 13 C -0.134 4.134 14 C -0.117 4.117 15 C 0.068 3.932 16 H 0.155 0.845 17 O -0.346 6.346 18 C 0.308 3.692 19 O -0.435 6.435 20 O -0.314 6.314 21 C -0.146 4.146 22 C -0.062 4.062 23 C -0.245 4.245 24 C -0.209 4.209 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.108 0.892 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.245 0.755 34 H 0.288 0.712 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.090 0.910 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.566 -1.580 -13.604 15.647 hybrid contribution 1.218 0.002 -0.149 1.227 sum 8.784 -1.578 -13.754 16.396 Atomic orbital electron populations 1.70105 1.08326 1.27412 1.51949 1.25375 0.94516 1.01768 0.93039 0.86187 0.78703 0.79962 0.78412 1.17862 1.24800 1.18296 1.20166 0.92199 0.93168 1.44827 0.95775 1.19270 0.91892 0.94933 0.94661 1.21743 0.93386 0.97821 0.90793 1.61588 1.55776 1.02420 1.05951 1.22229 0.98063 0.94321 0.93471 1.21457 0.99305 0.96780 0.95852 1.21707 0.98681 0.96761 0.94532 1.21576 1.03171 0.80718 0.87756 0.84509 1.86651 1.40739 1.48823 1.58359 1.24579 0.71944 0.87813 0.84894 1.90710 1.45095 1.88438 1.19260 1.84650 1.81349 1.17691 1.47704 1.21683 1.00108 0.98248 0.94516 1.22026 0.96477 0.91638 0.96045 1.23167 1.00876 1.05275 0.95173 1.22813 1.03057 0.92955 1.02044 0.93120 0.94282 0.93239 0.93869 0.92328 0.89239 0.92753 0.89169 0.75480 0.71242 0.92605 0.88530 0.94718 0.91217 0.89155 0.90845 0.91017 0.88420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.89 13.96 21.45 0.30 -57.59 16 2 C 0.05 2.95 5.30 84.66 0.45 3.39 16 3 Si 0.94 44.74 24.00 68.60 1.65 46.39 16 4 H -0.25 -11.14 5.07 99.48 0.50 -10.63 16 5 H -0.32 -15.71 7.11 99.48 0.71 -15.00 16 6 H -0.26 -11.60 6.76 99.48 0.67 -10.92 16 7 C -0.47 -26.00 9.22 25.60 0.24 -25.76 16 8 H 0.02 1.52 8.06 -2.91 -0.02 1.50 16 9 C -0.01 -0.28 0.92 -52.92 -0.05 -0.33 16 10 C 0.09 3.54 3.73 86.31 0.32 3.87 16 11 N -0.53 -19.92 4.02 -896.35 -3.60 -23.52 16 12 C 0.05 1.46 5.45 86.32 0.47 1.93 16 13 C -0.10 -2.57 5.20 30.65 0.16 -2.41 16 14 C -0.10 -2.19 2.01 -10.71 -0.02 -2.21 16 15 C 0.13 2.72 3.09 29.85 0.09 2.81 16 16 H 0.14 3.01 8.14 -2.38 -0.02 2.99 16 17 O -0.54 -11.28 12.38 -129.95 -1.61 -12.89 16 18 C 0.46 9.75 7.50 71.23 0.53 10.29 16 19 O -0.54 -14.14 17.08 28.40 0.49 -13.65 16 20 O -0.50 -8.36 10.70 -51.43 -0.55 -8.91 16 21 C -0.11 -2.89 4.77 30.65 0.15 -2.75 16 22 C 0.07 2.07 5.22 86.33 0.45 2.52 16 23 C -0.21 -8.15 9.96 30.62 0.30 -7.85 16 24 C -0.17 -6.47 8.26 30.62 0.25 -6.21 16 25 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 26 H 0.04 1.34 8.04 -2.39 -0.02 1.32 16 27 H 0.05 2.08 2.76 -2.39 -0.01 2.07 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.06 2.02 6.01 -2.39 -0.01 2.01 16 30 H 0.09 2.00 7.77 -2.39 -0.02 1.98 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.39 5.94 8.79 -74.05 -0.65 5.29 16 34 H 0.43 3.41 9.10 -74.06 -0.67 2.74 16 35 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 36 H 0.10 2.18 5.72 -2.39 -0.01 2.17 16 37 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 2.49 5.88 -2.39 -0.01 2.47 16 39 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 42 H 0.10 3.09 8.10 -2.39 -0.02 3.07 16 Total: -1.00 -70.69 323.54 -0.50 -71.19 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: -0.52 Total: 21.70 kcal Atomic # 6 Polarization: -26.05 SS G_CDS: 3.35 Total: -22.70 kcal Atomic # 7 Polarization: -77.81 SS G_CDS: -3.31 Total: -81.12 kcal Atomic # 8 Polarization: -33.78 SS G_CDS: -1.67 Total: -35.46 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 1.65 Total: 46.39 kcal Total: -70.69 -0.50 -71.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063261.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.541 kcal (2) G-P(sol) polarization free energy of solvation -70.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds