Wall clock time and date at job start Tue Mar 31 2020 05:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00366 * 2 1 4 4 H 1.48505 * 109.46706 * 239.99826 * 3 2 1 5 5 H 1.48498 * 109.46832 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47152 * 119.99797 * 3 2 1 7 7 C 1.37885 * 119.99414 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99293 * 171.16104 * 7 2 1 9 9 C 1.50690 * 120.00348 * 351.16269 * 7 2 1 10 10 C 1.53008 * 115.54868 * 324.25458 * 9 7 2 11 11 N 1.46892 * 109.47093 * 306.36788 * 10 9 7 12 12 C 1.46847 * 111.00149 * 288.09763 * 11 10 9 13 13 C 1.53042 * 109.52315 * 174.16327 * 12 11 10 14 14 C 1.53115 * 109.28097 * 59.17626 * 13 12 11 15 15 C 1.52995 * 109.52299 * 182.43733 * 14 13 12 16 16 H 1.09002 * 109.47192 * 179.68442 * 15 14 13 17 17 O 1.42903 * 109.47064 * 59.69011 * 15 14 13 18 18 C 1.50691 * 109.47483 * 299.68751 * 15 14 13 19 19 O 1.20830 * 120.00115 * 115.00226 * 18 15 14 20 20 O 1.34234 * 120.00165 * 294.99836 * 18 15 14 21 21 C 1.53118 * 109.16241 * 302.34908 * 14 13 12 22 22 C 1.46853 * 111.00199 * 163.88645 * 11 10 9 23 23 C 1.53000 * 117.50238 * 109.92584 * 9 7 2 24 24 C 1.53000 * 117.50121 * 178.58803 * 9 7 2 25 25 H 0.97003 * 119.99325 * 5.01824 * 1 2 3 26 26 H 1.08996 * 109.46761 * 186.36806 * 10 9 7 27 27 H 1.09000 * 109.46632 * 66.36894 * 10 9 7 28 28 H 1.09001 * 109.46346 * 294.17356 * 12 11 10 29 29 H 1.08997 * 109.46257 * 54.14467 * 12 11 10 30 30 H 1.09002 * 109.49833 * 299.23752 * 13 12 11 31 31 H 1.08997 * 109.53231 * 179.13985 * 13 12 11 32 32 H 1.09007 * 109.57307 * 62.28392 * 14 13 12 33 33 H 0.96707 * 113.99571 * 300.00016 * 17 15 14 34 34 H 0.96699 * 117.00141 * 180.02562 * 20 18 15 35 35 H 1.09002 * 109.50143 * 297.70961 * 21 14 13 36 36 H 1.08997 * 109.53621 * 177.61615 * 21 14 13 37 37 H 1.09001 * 109.45679 * 305.85730 * 22 11 10 38 38 H 1.08999 * 109.45791 * 65.82163 * 22 11 10 39 39 H 1.08999 * 117.50159 * 215.00841 * 23 9 7 40 40 H 1.09002 * 117.49817 * 0.02562 * 23 9 7 41 41 H 1.08995 * 117.49999 * 359.97241 * 24 9 7 42 42 H 1.09002 * 117.50440 * 144.97476 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0044 -1.1942 0.0005 8 1 3.0748 -1.1998 -0.1432 9 6 1.2643 -2.4913 0.2016 10 6 0.0830 -2.4335 1.1723 11 7 0.5302 -1.8744 2.4550 12 6 1.3731 -2.8326 3.1815 13 6 1.9375 -2.1668 4.4386 14 6 0.7806 -1.7005 5.3265 15 6 1.3378 -0.9800 6.5558 16 1 0.5134 -0.6435 7.1845 17 8 2.1091 0.1480 6.1379 18 6 2.2129 -1.9249 7.3382 19 8 3.3965 -1.7056 7.4428 20 8 1.6776 -3.0102 7.9190 21 6 -0.1089 -0.7414 4.5306 22 6 -0.6140 -1.4484 3.2710 23 6 1.1457 -3.4307 -1.0002 24 6 2.0808 -3.7846 0.1589 25 1 -0.4849 0.8369 -0.0735 26 1 -0.3068 -3.4390 1.3304 27 1 -0.7004 -1.8016 0.7538 28 1 0.7757 -3.6987 3.4664 29 1 2.1942 -3.1530 2.5403 30 1 2.5463 -1.3087 4.1537 31 1 2.5508 -2.8825 4.9859 32 1 0.1938 -2.5624 5.6444 33 1 2.8616 -0.0773 5.5737 34 1 2.2786 -3.5866 8.4106 35 1 0.4677 0.1392 4.2473 36 1 -0.9580 -0.4386 5.1433 37 1 -1.2360 -0.7635 2.6947 38 1 -1.2021 -2.3210 3.5553 39 1 0.2262 -4.0074 -1.0995 40 1 1.6034 -3.1107 -1.9363 41 1 3.1533 -3.6972 -0.0151 42 1 1.7767 -4.5940 0.8225 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601063262.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:48 Heat of formation + Delta-G solvation = -134.523660 kcal Electronic energy + Delta-G solvation = -23981.208095 eV Core-core repulsion = 20539.988839 eV Total energy + Delta-G solvation = -3441.219255 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.73594 -40.06335 -38.55006 -37.41161 -36.77766 -34.02476 -33.78125 -31.67221 -29.67167 -27.52119 -26.43961 -24.28011 -23.59634 -22.81965 -22.14089 -20.73356 -20.49966 -19.17464 -18.60704 -18.03418 -17.28231 -16.77987 -16.56635 -16.28971 -15.77101 -15.68956 -15.34831 -15.14642 -14.69980 -14.29875 -14.12253 -13.71818 -13.44664 -13.24719 -13.06717 -12.82530 -12.76199 -12.60469 -12.52700 -12.30565 -12.21435 -12.04290 -11.95792 -11.68982 -11.59808 -11.34250 -11.03101 -10.89309 -10.79434 -10.37717 -9.85185 -8.66283 -7.85599 -5.92941 1.07969 1.47294 1.51281 1.56080 2.00164 2.54511 3.12860 3.17943 3.40665 3.60737 3.73535 3.79233 3.96043 4.22314 4.31782 4.39804 4.41004 4.43770 4.58233 4.58906 4.69970 4.78384 4.84277 4.92277 4.94159 4.98680 5.02142 5.10835 5.19254 5.23906 5.30652 5.46823 5.53527 5.55787 5.59916 5.72143 6.11357 6.38736 6.50784 6.69413 6.79558 6.92865 7.05170 7.67924 9.13697 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.017925 B = 0.005835 C = 0.005165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.666289 B = 4797.721179 C = 5419.472597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.934 3.066 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.489 4.489 8 H 0.035 0.965 9 C 0.042 3.958 10 C 0.117 3.883 11 N -0.515 5.515 12 C 0.064 3.936 13 C -0.111 4.111 14 C -0.100 4.100 15 C 0.128 3.872 16 H 0.161 0.839 17 O -0.544 6.544 18 C 0.460 3.540 19 O -0.546 6.546 20 O -0.504 6.504 21 C -0.096 4.096 22 C 0.064 3.936 23 C -0.210 4.210 24 C -0.197 4.197 25 H 0.255 0.745 26 H -0.010 1.010 27 H 0.089 0.911 28 H 0.024 0.976 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.104 0.896 33 H 0.388 0.612 34 H 0.427 0.573 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.056 0.944 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.070 0.930 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.804 -5.445 14.491 15.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.142 4.142 3 Si 0.762 3.238 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.526 4.526 8 H 0.054 0.946 9 C 0.042 3.958 10 C -0.011 4.011 11 N -0.239 5.239 12 C -0.064 4.064 13 C -0.148 4.148 14 C -0.119 4.119 15 C 0.067 3.933 16 H 0.178 0.822 17 O -0.351 6.351 18 C 0.303 3.697 19 O -0.437 6.437 20 O -0.318 6.318 21 C -0.133 4.133 22 C -0.065 4.065 23 C -0.249 4.249 24 C -0.234 4.234 25 H 0.065 0.935 26 H 0.008 0.992 27 H 0.107 0.893 28 H 0.042 0.958 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.122 0.878 33 H 0.239 0.761 34 H 0.289 0.711 35 H 0.076 0.924 36 H 0.108 0.892 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.065 -4.261 14.625 15.373 hybrid contribution 1.066 -0.596 -0.392 1.283 sum -0.999 -4.858 14.233 15.072 Atomic orbital electron populations 1.69878 1.06462 1.26319 1.49949 1.25139 0.95147 1.00179 0.93690 0.86034 0.78745 0.81085 0.77967 1.21007 1.21280 1.20376 1.20360 0.92262 0.90600 1.49404 0.94636 1.19058 0.94847 0.88392 0.93534 1.21434 0.97355 0.93653 0.88620 1.61474 1.19551 1.39988 1.02873 1.21963 0.97162 0.92670 0.94572 1.21608 0.97359 1.00336 0.95530 1.21777 0.97329 0.99379 0.93409 1.21710 0.92250 0.84861 0.94479 0.82152 1.86600 1.46040 1.31085 1.71406 1.24731 0.87768 0.80731 0.76430 1.90734 1.19034 1.74288 1.59614 1.84509 1.47178 1.35631 1.64442 1.21469 0.99240 0.97787 0.94831 1.21975 0.92195 0.98073 0.94213 1.22968 1.00169 1.07636 0.94112 1.22892 0.96410 1.01537 1.02576 0.93525 0.99190 0.89348 0.95837 0.91880 0.92233 0.91614 0.87793 0.76122 0.71119 0.92435 0.89235 0.92535 0.95525 0.90763 0.91504 0.91162 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.62 10.71 21.45 0.23 -47.39 16 2 C 0.06 3.18 5.18 84.66 0.44 3.62 16 3 Si 0.93 43.66 29.55 68.60 2.03 45.69 16 4 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 7 C -0.49 -26.27 8.72 25.60 0.22 -26.04 16 8 H 0.04 1.97 7.83 -2.91 -0.02 1.94 16 9 C 0.04 2.04 1.57 -52.93 -0.08 1.95 16 10 C 0.12 5.26 4.05 86.31 0.35 5.61 16 11 N -0.52 -20.64 4.17 -896.36 -3.74 -24.39 16 12 C 0.06 2.22 5.26 86.33 0.45 2.68 16 13 C -0.11 -3.15 4.83 30.65 0.15 -3.00 16 14 C -0.10 -2.33 2.13 -10.72 -0.02 -2.35 16 15 C 0.13 2.69 3.30 29.84 0.10 2.79 16 16 H 0.16 2.53 8.14 -2.39 -0.02 2.51 16 17 O -0.54 -14.37 12.24 -129.95 -1.59 -15.96 16 18 C 0.46 9.93 6.45 71.23 0.46 10.39 16 19 O -0.55 -15.60 17.08 28.37 0.48 -15.11 16 20 O -0.50 -7.55 13.42 -51.45 -0.69 -8.24 16 21 C -0.10 -2.62 5.26 30.64 0.16 -2.46 16 22 C 0.06 2.17 5.44 86.32 0.47 2.64 16 23 C -0.21 -9.40 9.96 30.62 0.30 -9.09 16 24 C -0.20 -8.28 8.39 30.62 0.26 -8.02 16 25 H 0.26 13.32 8.32 -92.71 -0.77 12.55 16 26 H -0.01 -0.42 7.99 -2.39 -0.02 -0.44 16 27 H 0.09 4.47 5.75 -2.39 -0.01 4.45 16 28 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 29 H 0.06 2.42 6.02 -2.39 -0.01 2.41 16 30 H 0.06 1.91 6.66 -2.39 -0.02 1.89 16 31 H 0.07 1.69 7.32 -2.39 -0.02 1.67 16 32 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 33 H 0.39 10.10 7.02 -74.05 -0.52 9.58 16 34 H 0.43 2.98 9.10 -74.06 -0.67 2.30 16 35 H 0.06 1.89 7.62 -2.39 -0.02 1.87 16 36 H 0.09 1.94 8.14 -2.39 -0.02 1.93 16 37 H 0.06 2.18 7.96 -2.39 -0.02 2.16 16 38 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 40 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.07 2.96 8.14 -2.39 -0.02 2.94 16 42 H 0.08 3.08 8.06 -2.39 -0.02 3.07 16 Total: -1.00 -63.26 333.82 -0.18 -63.44 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -0.16 Total: 23.25 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: 3.26 Total: -21.29 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -3.51 Total: -71.78 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -1.80 Total: -39.31 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -63.26 -0.18 -63.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601063262.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.080 kcal (2) G-P(sol) polarization free energy of solvation -63.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds