Wall clock time and date at job start Tue Mar 31 2020 05:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99769 * 2 1 4 4 H 1.48502 * 109.46818 * 239.99869 * 3 2 1 5 5 H 1.48496 * 109.47503 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47170 * 120.00465 * 3 2 1 7 7 C 1.37877 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47280 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47202 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.46990 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00279 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99766 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00261 * 359.97438 * 14 12 11 16 16 C 1.50701 * 109.47313 * 270.00141 * 15 14 12 17 17 O 1.20829 * 119.99813 * 359.97438 * 16 15 14 18 18 O 1.34223 * 120.00200 * 179.97438 * 16 15 14 19 19 C 1.46500 * 120.00024 * 180.02562 * 14 12 11 20 20 C 1.54961 * 110.92632 * 126.53843 * 19 14 12 21 21 C 1.54270 * 104.16191 * 156.29508 * 20 19 14 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 0.96995 * 120.00356 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47092 * 60.00020 * 9 7 2 26 26 H 1.08997 * 109.47578 * 300.00006 * 9 7 2 27 27 H 1.09004 * 109.46878 * 60.00089 * 10 9 7 28 28 H 1.09005 * 109.47160 * 300.00284 * 10 9 7 29 29 H 1.08999 * 109.47358 * 59.99591 * 11 10 9 30 30 H 1.09005 * 109.46991 * 300.00015 * 11 10 9 31 31 H 1.09003 * 109.47237 * 29.99893 * 15 14 12 32 32 H 1.09000 * 109.47693 * 150.00009 * 15 14 12 33 33 H 0.96706 * 117.00550 * 180.02562 * 18 16 15 34 34 H 1.09001 * 110.67461 * 3.22955 * 19 14 12 35 35 H 1.08997 * 110.47708 * 37.64106 * 20 19 14 36 36 H 1.09002 * 110.53308 * 274.97498 * 20 19 14 37 37 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 38 38 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 39 39 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 40 40 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 41 41 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 42 42 H 1.09001 * 110.48482 * 264.93365 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0020 12 6 2.4596 -6.1325 0.0024 13 8 3.6520 -5.9109 0.0018 14 7 2.0104 -7.4032 0.0034 15 6 0.5701 -7.6709 0.0047 16 6 0.0773 -7.7620 1.4260 17 8 0.8501 -7.6184 2.3437 18 8 -1.2200 -8.0025 1.6724 19 6 2.9623 -8.5167 0.0044 20 6 2.6670 -9.4964 1.1681 21 6 3.2805 -10.8327 0.7014 22 6 3.3455 -10.7750 -0.8348 23 6 2.7686 -9.4056 -1.2493 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6247 -2.5564 0.8919 27 1 2.8726 -3.6039 0.8910 28 1 2.8713 -3.6047 -0.8891 29 1 0.8532 -5.0450 -0.8877 30 1 0.8540 -5.0447 0.8923 31 1 0.0497 -6.8626 -0.5091 32 1 0.3750 -8.6126 -0.5085 33 1 -1.4890 -8.0518 2.6000 34 1 3.9863 -8.1475 0.0615 35 1 1.5920 -9.6009 1.3150 36 1 3.1471 -9.1561 2.0856 37 1 2.6499 -11.6637 1.0175 38 1 4.2830 -10.9474 1.1135 39 1 4.3797 -10.8609 -1.1683 40 1 2.7472 -11.5785 -1.2644 41 1 3.3227 -8.9984 -2.0950 42 1 1.7101 -9.4957 -1.4932 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:29 Heat of formation + Delta-G solvation = -148.588992 kcal Electronic energy + Delta-G solvation = -22887.889953 eV Core-core repulsion = 19446.060779 eV Total energy + Delta-G solvation = -3441.829174 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.94660 -39.55102 -37.90268 -36.28899 -34.78152 -34.21067 -32.02384 -29.31713 -28.94391 -28.37773 -26.93846 -23.84600 -22.40587 -21.10088 -20.55503 -19.98444 -18.90267 -18.30087 -17.38933 -16.94907 -16.50547 -16.01215 -15.74933 -15.52316 -15.14206 -14.43535 -14.14995 -13.76207 -13.52891 -13.37202 -13.00329 -12.74256 -12.49613 -12.21360 -11.83719 -11.78531 -11.69490 -11.48962 -11.33214 -11.27886 -10.85685 -10.79021 -10.76971 -10.66155 -10.60402 -10.53658 -9.70329 -9.66706 -9.26852 -9.02621 -8.85537 -8.30460 -5.96337 -3.97722 2.00957 2.40160 2.83957 3.17478 3.37925 3.41097 3.45176 4.33812 4.41069 4.50317 4.56076 4.62075 4.75161 4.91981 5.06955 5.15467 5.21711 5.29024 5.30670 5.39402 5.39769 5.61135 5.63552 5.66287 5.69117 5.81563 5.96602 6.00107 6.12394 6.18396 6.31870 6.43278 6.71957 6.92355 7.15612 7.26769 7.70884 7.71581 7.84199 8.03995 8.30253 8.48066 9.08927 9.66104 11.15192 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024733 B = 0.003582 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.810364 B = 7814.623497 C = 8523.370675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.021 3.979 10 C -0.095 4.095 11 C -0.140 4.140 12 C 0.523 3.477 13 O -0.524 6.524 14 N -0.599 5.599 15 C 0.117 3.883 16 C 0.453 3.547 17 O -0.496 6.496 18 O -0.518 6.518 19 C 0.134 3.866 20 C -0.127 4.127 21 C -0.124 4.124 22 C -0.122 4.122 23 C -0.136 4.136 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.129 0.871 32 H 0.122 0.878 33 H 0.411 0.589 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.350 -24.438 -0.803 24.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.180 4.180 12 C 0.313 3.687 13 O -0.398 6.398 14 N -0.333 5.333 15 C -0.009 4.009 16 C 0.292 3.708 17 O -0.382 6.382 18 O -0.330 6.330 19 C 0.031 3.969 20 C -0.166 4.166 21 C -0.162 4.162 22 C -0.160 4.160 23 C -0.175 4.175 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.270 0.730 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.487 -24.099 -0.956 24.123 hybrid contribution 0.030 0.812 0.795 1.136 sum -0.457 -23.287 -0.162 23.292 Atomic orbital electron populations 1.69949 1.06032 1.26651 1.51140 1.25014 0.94860 0.99233 0.95362 0.86646 0.79570 0.83038 0.78698 1.20212 1.21337 1.20225 1.21232 0.93171 0.90995 1.50269 0.92605 1.19122 0.93932 0.91432 0.97087 1.21460 0.98682 0.91323 1.01808 1.21934 0.98316 0.94416 1.03350 1.21286 0.90405 0.83132 0.73839 1.90670 1.17241 1.83834 1.48058 1.47739 1.04283 1.06592 1.74713 1.20954 0.82980 1.06606 0.90327 1.24262 0.79937 0.72752 0.93837 1.90784 1.56292 1.44463 1.46641 1.84513 1.28172 1.83732 1.36545 1.22162 0.94859 0.85555 0.94325 1.22691 1.00890 0.94366 0.98622 1.22105 1.01214 0.97309 0.95621 1.22065 1.01357 0.96835 0.95717 1.22742 1.01481 0.95188 0.98060 0.93016 0.96571 0.96671 0.92628 0.92525 0.89145 0.89696 0.85371 0.86045 0.72999 0.87069 0.92007 0.90846 0.91772 0.91563 0.91505 0.91611 0.90865 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 10 C -0.09 -2.09 4.44 -26.73 -0.12 -2.21 16 11 C -0.14 -2.40 4.25 -27.88 -0.12 -2.52 16 12 C 0.52 8.79 7.67 -10.99 -0.08 8.71 16 13 O -0.52 -10.72 15.35 5.56 0.09 -10.63 16 14 N -0.60 -7.60 2.05 -165.16 -0.34 -7.94 16 15 C 0.12 1.09 5.11 -5.20 -0.03 1.06 16 16 C 0.45 4.86 6.91 36.01 0.25 5.11 16 17 O -0.50 -7.17 15.60 -18.75 -0.29 -7.46 16 18 O -0.52 -4.20 13.42 -39.24 -0.53 -4.72 16 19 C 0.13 1.54 3.29 -65.89 -0.22 1.33 16 20 C -0.13 -1.32 5.24 -25.03 -0.13 -1.45 16 21 C -0.12 -0.99 6.80 -25.61 -0.17 -1.17 16 22 C -0.12 -0.89 6.80 -25.62 -0.17 -1.06 16 23 C -0.14 -1.16 6.39 -25.07 -0.16 -1.33 16 24 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 1.30 8.10 -51.93 -0.42 0.88 16 28 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 29 H 0.09 1.32 7.40 -51.93 -0.38 0.94 16 30 H 0.08 1.42 8.00 -51.93 -0.42 1.00 16 31 H 0.13 1.03 6.44 -51.93 -0.33 0.70 16 32 H 0.12 0.76 6.38 -51.93 -0.33 0.42 16 33 H 0.41 1.90 9.10 45.56 0.41 2.31 16 34 H 0.11 1.54 7.00 -51.93 -0.36 1.17 16 35 H 0.06 0.63 5.56 -51.93 -0.29 0.34 16 36 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.07 0.50 6.36 -51.93 -0.33 0.17 16 LS Contribution 340.65 15.07 5.13 5.13 Total: -1.00 -35.86 340.65 -7.53 -43.38 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -5.80 Total: -1.41 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: -1.51 Total: -7.03 kcal Atomic # 7 Polarization: -34.83 SS G_CDS: 0.40 Total: -34.43 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.73 Total: -22.82 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.86 -7.53 -43.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.205 kcal (2) G-P(sol) polarization free energy of solvation -35.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds