Wall clock time and date at job start Tue Mar 31 2020 05:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99769 * 2 1 4 4 H 1.48502 * 109.46818 * 239.99869 * 3 2 1 5 5 H 1.48496 * 109.47503 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47170 * 120.00465 * 3 2 1 7 7 C 1.37877 * 119.99983 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00074 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00167 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47280 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47202 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.46990 * 180.02562 * 11 10 9 13 13 O 1.21277 * 120.00279 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99766 * 179.97438 * 12 11 10 15 15 C 1.46497 * 120.00261 * 359.97438 * 14 12 11 16 16 C 1.50701 * 109.47313 * 270.00141 * 15 14 12 17 17 O 1.20829 * 119.99813 * 359.97438 * 16 15 14 18 18 O 1.34223 * 120.00200 * 179.97438 * 16 15 14 19 19 C 1.46500 * 120.00024 * 180.02562 * 14 12 11 20 20 C 1.54961 * 110.92632 * 126.53843 * 19 14 12 21 21 C 1.54270 * 104.16191 * 156.29508 * 20 19 14 22 22 C 1.53869 * 106.63967 * 336.44607 * 21 20 19 23 23 C 1.54268 * 106.60115 * 359.97438 * 22 21 20 24 24 H 0.96995 * 120.00356 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47092 * 60.00020 * 9 7 2 26 26 H 1.08997 * 109.47578 * 300.00006 * 9 7 2 27 27 H 1.09004 * 109.46878 * 60.00089 * 10 9 7 28 28 H 1.09005 * 109.47160 * 300.00284 * 10 9 7 29 29 H 1.08999 * 109.47358 * 59.99591 * 11 10 9 30 30 H 1.09005 * 109.46991 * 300.00015 * 11 10 9 31 31 H 1.09003 * 109.47237 * 29.99893 * 15 14 12 32 32 H 1.09000 * 109.47693 * 150.00009 * 15 14 12 33 33 H 0.96706 * 117.00550 * 180.02562 * 18 16 15 34 34 H 1.09001 * 110.67461 * 3.22955 * 19 14 12 35 35 H 1.08997 * 110.47708 * 37.64106 * 20 19 14 36 36 H 1.09002 * 110.53308 * 274.97498 * 20 19 14 37 37 H 1.09002 * 110.03399 * 217.13605 * 21 20 19 38 38 H 1.08995 * 110.02943 * 95.75505 * 21 20 19 39 39 H 1.08999 * 110.03405 * 119.26051 * 22 21 20 40 40 H 1.09001 * 110.03705 * 240.64196 * 22 21 20 41 41 H 1.08997 * 110.48788 * 142.28685 * 23 22 21 42 42 H 1.09001 * 110.48482 * 264.93365 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4803 -4.9871 0.0020 12 6 2.4596 -6.1325 0.0024 13 8 3.6520 -5.9109 0.0018 14 7 2.0104 -7.4032 0.0034 15 6 0.5701 -7.6709 0.0047 16 6 0.0773 -7.7620 1.4260 17 8 0.8501 -7.6184 2.3437 18 8 -1.2200 -8.0025 1.6724 19 6 2.9623 -8.5167 0.0044 20 6 2.6670 -9.4964 1.1681 21 6 3.2805 -10.8327 0.7014 22 6 3.3455 -10.7750 -0.8348 23 6 2.7686 -9.4056 -1.2493 24 1 -0.4850 0.8400 0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6247 -2.5564 0.8919 27 1 2.8726 -3.6039 0.8910 28 1 2.8713 -3.6047 -0.8891 29 1 0.8532 -5.0450 -0.8877 30 1 0.8540 -5.0447 0.8923 31 1 0.0497 -6.8626 -0.5091 32 1 0.3750 -8.6126 -0.5085 33 1 -1.4890 -8.0518 2.6000 34 1 3.9863 -8.1475 0.0615 35 1 1.5920 -9.6009 1.3150 36 1 3.1471 -9.1561 2.0856 37 1 2.6499 -11.6637 1.0175 38 1 4.2830 -10.9474 1.1135 39 1 4.3797 -10.8609 -1.1683 40 1 2.7472 -11.5785 -1.2644 41 1 3.3227 -8.9984 -2.0950 42 1 1.7101 -9.4957 -1.4932 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601064544.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:29 Heat of formation + Delta-G solvation = -172.127565 kcal Electronic energy + Delta-G solvation = -22888.910662 eV Core-core repulsion = 19446.060779 eV Total energy + Delta-G solvation = -3442.849883 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.92077 -40.58697 -38.87664 -37.09314 -36.16782 -35.79565 -34.02672 -30.40518 -29.76115 -29.63967 -28.18850 -25.71472 -23.27987 -22.60185 -21.38927 -21.20269 -19.97210 -19.11269 -18.61568 -18.40381 -17.77117 -17.33096 -16.62029 -16.50096 -16.49148 -16.31537 -15.29470 -15.08244 -14.41831 -14.34169 -14.21942 -14.02958 -13.87709 -13.40940 -13.24980 -13.19619 -12.73174 -12.59175 -12.52670 -12.49994 -12.41772 -12.14067 -11.99854 -11.73149 -11.64850 -11.59691 -11.46703 -11.28909 -11.26517 -10.81382 -10.54856 -9.88775 -8.20884 -6.30930 1.18279 1.35189 1.39132 1.42073 1.50161 1.72056 2.29857 2.41313 3.11986 3.40140 3.66130 3.72491 3.87337 3.96312 4.06316 4.13909 4.28052 4.30826 4.41817 4.45689 4.49546 4.60627 4.70526 4.75032 4.89614 4.90936 5.03060 5.07782 5.12507 5.16154 5.20041 5.27745 5.46416 5.49957 5.52537 5.63461 5.72381 5.84190 6.13273 6.27235 6.83495 6.96664 7.06405 7.37542 8.90494 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.024733 B = 0.003582 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.810364 B = 7814.623497 C = 8523.370675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.005 3.995 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.550 4.550 8 H 0.050 0.950 9 C 0.028 3.972 10 C -0.082 4.082 11 C -0.131 4.131 12 C 0.522 3.478 13 O -0.573 6.573 14 N -0.590 5.590 15 C 0.107 3.893 16 C 0.458 3.542 17 O -0.541 6.541 18 O -0.507 6.507 19 C 0.125 3.875 20 C -0.121 4.121 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.128 4.128 24 H 0.265 0.735 25 H 0.007 0.993 26 H -0.004 1.004 27 H 0.033 0.967 28 H 0.047 0.953 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.147 0.853 32 H 0.163 0.837 33 H 0.427 0.573 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.043 0.957 37 H 0.081 0.919 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 -25.898 -1.843 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.588 4.588 8 H 0.069 0.931 9 C -0.009 4.009 10 C -0.120 4.120 11 C -0.171 4.171 12 C 0.312 3.688 13 O -0.452 6.452 14 N -0.321 5.321 15 C -0.017 4.017 16 C 0.300 3.700 17 O -0.431 6.431 18 O -0.320 6.320 19 C 0.022 3.978 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.166 4.166 24 H 0.074 0.926 25 H 0.026 0.974 26 H 0.015 0.985 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.140 0.860 30 H 0.109 0.891 31 H 0.165 0.835 32 H 0.180 0.820 33 H 0.289 0.711 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.107 0.893 41 H 0.086 0.914 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.685 -25.612 -1.996 25.745 hybrid contribution 0.297 1.221 1.164 1.713 sum -1.389 -24.391 -0.832 24.445 Atomic orbital electron populations 1.70049 1.07448 1.27899 1.51396 1.25890 0.95843 1.03003 0.94601 0.85561 0.78417 0.78407 0.79042 1.19264 1.20225 1.19673 1.21652 0.93329 0.92818 1.51016 0.93135 1.18994 0.94093 0.92213 0.95570 1.21167 0.97713 0.92847 1.00280 1.21756 0.98069 0.92069 1.05162 1.21129 0.89454 0.84489 0.73710 1.90651 1.18968 1.84804 1.50737 1.47653 1.06251 1.05406 1.72822 1.21408 0.80656 1.09470 0.90161 1.24431 0.80221 0.71544 0.93814 1.90794 1.57530 1.46744 1.48018 1.84473 1.26532 1.82889 1.38113 1.22289 0.93133 0.85517 0.96855 1.22611 1.01118 0.95317 0.96924 1.22096 1.01220 0.96206 0.96285 1.22065 1.01866 0.96615 0.94918 1.22718 1.03019 0.94867 0.95999 0.92598 0.97436 0.98522 0.94821 0.93404 0.85982 0.89116 0.83503 0.81964 0.71120 0.90329 0.91343 0.93768 0.90063 0.91859 0.91459 0.89328 0.91378 0.88895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 2 C 0.00 0.28 5.46 84.65 0.46 0.74 16 3 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 4 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.55 -32.82 9.11 25.60 0.23 -32.59 16 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 9 C 0.03 1.53 4.97 29.85 0.15 1.67 16 10 C -0.08 -3.73 4.44 30.59 0.14 -3.59 16 11 C -0.13 -4.46 4.25 29.85 0.13 -4.33 16 12 C 0.52 17.72 7.67 87.66 0.67 18.39 16 13 O -0.57 -24.53 15.35 -3.02 -0.05 -24.58 16 14 N -0.59 -14.42 2.05 -794.84 -1.63 -16.05 16 15 C 0.11 1.70 5.11 85.63 0.44 2.13 16 16 C 0.46 8.97 6.91 71.24 0.49 9.46 16 17 O -0.54 -15.47 15.60 21.95 0.34 -15.13 16 18 O -0.51 -6.85 13.42 -51.35 -0.69 -7.54 16 19 C 0.12 2.82 3.29 46.31 0.15 2.97 16 20 C -0.12 -2.43 5.24 31.70 0.17 -2.27 16 21 C -0.12 -1.69 6.80 31.32 0.21 -1.47 16 22 C -0.12 -1.37 6.80 31.32 0.21 -1.16 16 23 C -0.13 -1.88 6.39 31.67 0.20 -1.67 16 24 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 25 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 26 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 27 H 0.03 1.64 8.10 -2.38 -0.02 1.62 16 28 H 0.05 2.23 8.10 -2.38 -0.02 2.21 16 29 H 0.12 3.34 7.40 -2.39 -0.02 3.32 16 30 H 0.09 2.99 8.00 -2.38 -0.02 2.98 16 31 H 0.15 1.84 6.44 -2.39 -0.02 1.83 16 32 H 0.16 1.26 6.38 -2.39 -0.02 1.25 16 33 H 0.43 2.98 9.10 -74.05 -0.67 2.31 16 34 H 0.08 2.30 7.00 -2.39 -0.02 2.28 16 35 H 0.07 1.27 5.56 -2.39 -0.01 1.26 16 36 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 0.93 6.36 -2.39 -0.02 0.91 16 Total: -1.00 -80.34 340.65 4.29 -76.05 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: 0.35 Total: 7.59 kcal Atomic # 6 Polarization: -15.37 SS G_CDS: 3.66 Total: -11.71 kcal Atomic # 7 Polarization: -70.94 SS G_CDS: -1.34 Total: -72.28 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -0.39 Total: -47.24 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -80.34 4.29 -76.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064544.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.081 kcal (2) G-P(sol) polarization free energy of solvation -80.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds