Wall clock time and date at job start Tue Mar 31 2020 05:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00257 * 2 1 4 4 H 1.48507 * 109.47066 * 270.00271 * 3 2 1 5 5 H 1.48503 * 109.47031 * 29.99703 * 3 2 1 6 6 H 1.48496 * 109.47306 * 150.00021 * 3 2 1 7 7 C 1.37875 * 119.99460 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99460 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00420 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47245 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47208 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.47283 * 179.97438 * 11 10 9 13 13 O 1.21288 * 119.99718 * 0.02562 * 12 11 10 14 14 N 1.34769 * 120.00215 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00098 * 180.02562 * 14 12 11 16 16 H 1.09000 * 110.81757 * 31.67210 * 15 14 12 17 17 C 1.54886 * 110.76079 * 268.33000 * 15 14 12 18 18 C 1.54263 * 104.20183 * 203.74470 * 17 15 14 19 19 C 1.53878 * 106.59561 * 23.60642 * 18 17 15 20 20 C 1.54261 * 106.59990 * 0.02562 * 19 18 17 21 21 H 1.08999 * 110.48692 * 95.19747 * 20 19 18 22 22 C 1.52996 * 110.48732 * 217.70991 * 20 19 18 23 23 C 1.50706 * 109.47215 * 293.54697 * 22 20 19 24 24 O 1.20825 * 119.99859 * 359.97438 * 23 22 20 25 25 O 1.34224 * 120.00295 * 180.02562 * 23 22 20 26 26 H 0.97011 * 119.99681 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47073 * 60.00125 * 9 7 2 28 28 H 1.09000 * 109.46993 * 300.00079 * 9 7 2 29 29 H 1.09003 * 109.47367 * 59.99923 * 10 9 7 30 30 H 1.09000 * 109.47250 * 299.99995 * 10 9 7 31 31 H 1.08999 * 109.46828 * 60.00371 * 11 10 9 32 32 H 1.09000 * 109.47275 * 300.00303 * 11 10 9 33 33 H 0.96997 * 120.00039 * 0.02562 * 14 12 11 34 34 H 1.09006 * 110.48524 * 85.06138 * 17 15 14 35 35 H 1.09005 * 110.59630 * 322.48331 * 17 15 14 36 36 H 1.09002 * 110.03244 * 264.32625 * 18 17 15 37 37 H 1.08998 * 110.07376 * 142.91601 * 18 17 15 38 38 H 1.08995 * 110.03510 * 240.71474 * 19 18 17 39 39 H 1.09003 * 110.02731 * 119.28499 * 19 18 17 40 40 H 1.08997 * 109.47192 * 173.54783 * 22 20 19 41 41 H 1.09000 * 109.47459 * 53.54863 * 22 20 19 42 42 H 0.96700 * 117.00196 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2451 -3.6621 -0.0018 11 6 1.4801 -4.9871 -0.0012 12 6 2.4593 -6.1326 -0.0031 13 8 3.6518 -5.9110 -0.0043 14 7 2.0101 -7.4032 -0.0034 15 6 2.9620 -8.5167 -0.0047 16 1 3.8732 -8.2480 0.5297 17 6 3.2856 -8.9607 -1.4529 18 6 3.7500 -10.4244 -1.3051 19 6 3.1370 -10.9499 0.0048 20 6 2.3209 -9.7875 0.6069 21 1 1.2732 -9.8666 0.3170 22 6 2.4538 -9.7731 2.1310 23 6 1.7978 -11.0029 2.7041 24 8 1.2769 -11.8080 1.9690 25 8 1.7911 -11.2034 4.0313 26 1 -0.4850 0.8402 0.0004 27 1 0.6239 -2.5566 -0.8903 28 1 0.6246 -2.5570 0.8897 29 1 2.8725 -3.6048 0.8877 30 1 2.8711 -3.6040 -0.8923 31 1 0.8525 -5.0447 -0.8905 32 1 0.8543 -5.0450 0.8895 33 1 1.0564 -7.5805 -0.0028 34 1 4.0841 -8.3474 -1.8705 35 1 2.3953 -8.9043 -2.0792 36 1 4.8379 -10.4673 -1.2518 37 1 3.3941 -11.0167 -2.1481 38 1 3.9272 -11.2480 0.6937 39 1 2.4828 -11.7968 -0.2027 40 1 1.9677 -8.8828 2.5297 41 1 3.5091 -9.7638 2.4037 42 1 1.3580 -12.0063 4.3519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601064969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:29 Heat of formation + Delta-G solvation = -168.825908 kcal Electronic energy + Delta-G solvation = -21924.521785 eV Core-core repulsion = 18481.815073 eV Total energy + Delta-G solvation = -3442.706712 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.83110 -39.77147 -38.10058 -36.42227 -34.18309 -33.68655 -32.18064 -31.98793 -28.63353 -27.27430 -26.51958 -23.77519 -22.12370 -21.09539 -20.64800 -20.17167 -19.51674 -18.42618 -17.19152 -16.75624 -16.37369 -16.15443 -15.94946 -15.33309 -15.18226 -14.42669 -14.17309 -13.98899 -13.52095 -13.47629 -13.18473 -12.72181 -12.37366 -12.25146 -11.92440 -11.85538 -11.74339 -11.42340 -11.31219 -11.19785 -11.02339 -10.83573 -10.79541 -10.64153 -10.59165 -10.52280 -9.68023 -9.66364 -9.25417 -9.01081 -8.99057 -8.31035 -5.96791 -3.98107 1.85359 2.66082 2.91564 3.26496 3.35487 3.41298 3.46192 4.12809 4.26677 4.42562 4.50250 4.78052 4.86170 5.00666 5.07050 5.09394 5.25425 5.27871 5.37369 5.38432 5.39365 5.47347 5.72423 5.72932 5.74774 5.82086 5.93482 5.99529 6.10315 6.15371 6.28632 6.53566 6.74168 6.94706 7.17734 7.52907 7.60666 7.72320 7.85064 8.04095 8.45994 8.48509 9.09095 9.65850 11.14727 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.026184 B = 0.002732 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.087494 B =10248.101791 C =10875.203542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.139 4.139 12 C 0.514 3.486 13 O -0.537 6.537 14 N -0.735 5.735 15 C 0.145 3.855 16 H 0.099 0.901 17 C -0.135 4.135 18 C -0.123 4.123 19 C -0.114 4.114 20 C -0.087 4.087 21 H 0.091 0.909 22 C -0.110 4.110 23 C 0.479 3.521 24 O -0.514 6.514 25 O -0.519 6.519 26 H 0.260 0.740 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.399 0.601 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 -25.683 3.152 26.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.074 0.926 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.179 4.179 12 C 0.302 3.698 13 O -0.412 6.412 14 N -0.387 5.387 15 C 0.040 3.960 16 H 0.117 0.883 17 C -0.174 4.174 18 C -0.161 4.161 19 C -0.152 4.152 20 C -0.107 4.107 21 H 0.109 0.891 22 C -0.147 4.147 23 C 0.322 3.678 24 O -0.402 6.402 25 O -0.331 6.331 26 H 0.069 0.931 27 H 0.034 0.966 28 H 0.034 0.966 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.234 0.766 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.095 0.905 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.551 -25.245 2.814 25.649 hybrid contribution -0.438 0.252 0.237 0.559 sum 3.113 -24.993 3.051 25.370 Atomic orbital electron populations 1.69968 1.06038 1.26519 1.51246 1.25022 0.94857 0.99251 0.95407 0.86594 0.79901 0.83428 0.78101 1.20683 1.21274 1.19832 1.21278 0.93191 0.91036 1.50093 0.92585 1.19130 0.93976 0.91486 0.97099 1.21440 0.98613 0.91560 1.01658 1.21855 0.98178 0.94157 1.03741 1.21276 0.90393 0.83738 0.74377 1.90676 1.17325 1.84688 1.48556 1.46146 1.09782 1.05617 1.77180 1.21927 0.93317 0.84641 0.96150 0.88258 1.22731 1.01997 0.95870 0.96788 1.22090 1.00649 0.95789 0.97599 1.22148 0.98883 0.97544 0.96664 1.22111 1.01592 0.95339 0.91618 0.89114 1.21499 1.02981 0.94304 0.95948 1.23562 0.76709 0.87714 0.79846 1.90721 1.42967 1.46143 1.60324 1.84561 1.74346 1.48673 1.25478 0.93082 0.96643 0.96620 0.92727 0.92731 0.89385 0.89387 0.76637 0.90861 0.91120 0.91582 0.91572 0.91897 0.90548 0.87203 0.87271 0.73189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.99 9.11 -34.44 -0.31 -15.30 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.02 0.52 4.97 -27.89 -0.14 0.38 16 10 C -0.09 -2.02 4.44 -26.73 -0.12 -2.14 16 11 C -0.14 -2.23 5.70 -27.88 -0.16 -2.39 16 12 C 0.51 7.80 7.83 -10.99 -0.09 7.71 16 13 O -0.54 -10.27 15.63 5.55 0.09 -10.18 16 14 N -0.73 -7.88 5.18 -51.87 -0.27 -8.15 16 15 C 0.14 1.41 2.69 -65.93 -0.18 1.23 16 16 H 0.10 1.12 7.47 -51.93 -0.39 0.73 16 17 C -0.14 -1.28 6.51 -25.08 -0.16 -1.44 16 18 C -0.12 -0.96 6.80 -25.61 -0.17 -1.13 16 19 C -0.11 -0.88 5.39 -25.61 -0.14 -1.02 16 20 C -0.09 -0.68 2.10 -88.95 -0.19 -0.87 16 21 H 0.09 0.73 7.90 -51.93 -0.41 0.32 16 22 C -0.11 -0.78 5.20 -27.88 -0.14 -0.92 16 23 C 0.48 3.86 8.11 36.01 0.29 4.15 16 24 O -0.51 -5.44 15.55 -18.75 -0.29 -5.73 16 25 O -0.52 -3.33 13.42 -39.24 -0.53 -3.86 16 26 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 30 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.40 3.27 8.57 -40.82 -0.35 2.92 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.45 7.77 -51.93 -0.40 0.05 16 39 H 0.08 0.65 7.61 -51.93 -0.40 0.26 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.11 0.67 8.05 -51.93 -0.42 0.25 16 42 H 0.41 0.99 9.10 45.56 0.41 1.40 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -35.24 350.25 -7.75 -42.99 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -6.14 Total: -0.73 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -1.61 Total: -10.23 kcal Atomic # 7 Polarization: -35.01 SS G_CDS: 0.47 Total: -34.54 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.73 Total: -19.78 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.24 -7.75 -42.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601064969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.839 kcal (2) G-P(sol) polarization free energy of solvation -35.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds