Wall clock time and date at job start Tue Mar 31 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99639 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99718 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00236 * 3 2 1 7 7 C 1.37871 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00197 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47305 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46969 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46993 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00165 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99926 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00033 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.47247 * 300.00119 * 15 13 12 17 17 C 1.52997 * 109.47265 * 60.00305 * 15 13 12 18 18 C 1.52999 * 109.47592 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.46626 * 300.00035 * 18 17 15 20 20 H 1.09000 * 109.47050 * 299.99699 * 19 18 17 21 21 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 22 22 O 1.20828 * 120.00000 * 0.02562 * 21 19 18 23 23 O 1.34231 * 120.00154 * 180.02562 * 21 19 18 24 24 C 1.52997 * 109.47164 * 59.99702 * 19 18 17 25 25 C 1.52996 * 109.46861 * 180.02562 * 15 13 12 26 26 H 0.97005 * 120.00032 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47043 * 59.99928 * 9 7 2 28 28 H 1.09000 * 109.46974 * 300.00010 * 9 7 2 29 29 H 1.09000 * 109.46497 * 60.00267 * 10 9 7 30 30 H 1.09004 * 109.47059 * 300.00501 * 10 9 7 31 31 H 1.08996 * 109.47452 * 59.99938 * 11 10 9 32 32 H 1.09000 * 109.47054 * 300.00097 * 11 10 9 33 33 H 0.96996 * 119.99985 * 0.02562 * 12 11 10 34 34 H 1.09000 * 109.47140 * 59.99748 * 17 15 13 35 35 H 1.09002 * 109.47045 * 299.99841 * 17 15 13 36 36 H 1.08993 * 109.47839 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.47160 * 59.99666 * 18 17 15 38 38 H 0.96691 * 116.99942 * 179.97438 * 23 21 19 39 39 H 1.09000 * 109.47140 * 60.00051 * 24 19 18 40 40 H 1.09001 * 109.47230 * 179.97438 * 24 19 18 41 41 H 1.08992 * 109.47534 * 60.00272 * 25 15 13 42 42 H 1.08996 * 109.47134 * 299.99466 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4322 -6.1006 0.0005 13 6 1.9830 -7.3713 0.0006 14 8 0.7906 -7.5929 -0.0003 15 6 2.9622 -8.5167 0.0007 16 1 3.5889 -8.4591 -0.8893 17 6 3.8419 -8.4357 1.2499 18 6 4.8366 -9.5982 1.2497 19 6 4.0719 -10.9235 1.2494 20 1 3.4453 -10.9816 2.1394 21 6 5.0516 -12.0686 1.2486 22 8 6.2395 -11.8473 1.2487 23 8 4.6047 -13.3343 1.2477 24 6 3.1923 -11.0046 0.0002 25 6 2.1972 -9.8417 0.0001 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8718 -3.6043 0.8906 30 1 2.8720 -3.6043 -0.8894 31 1 0.8539 -5.0446 -0.8903 32 1 0.8532 -5.0450 0.8896 33 1 3.3858 -5.9234 0.0016 34 1 3.2152 -8.4933 2.1399 35 1 4.3869 -7.4917 1.2498 36 1 5.4629 -9.5407 2.1398 37 1 5.4632 -9.5401 0.3597 38 1 5.2709 -14.0351 1.2468 39 1 3.8189 -10.9464 -0.8898 40 1 2.6480 -11.9489 -0.0002 41 1 1.5709 -9.8993 -0.8900 42 1 1.5704 -9.8996 0.8899 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601065659.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:09 Heat of formation + Delta-G solvation = -174.495170 kcal Electronic energy + Delta-G solvation = -21767.892637 eV Core-core repulsion = 18324.940087 eV Total energy + Delta-G solvation = -3442.952550 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02096 -39.92194 -37.73279 -36.48210 -35.41438 -33.37300 -32.14037 -31.17515 -30.86153 -26.98218 -25.27391 -23.17833 -23.08371 -21.79259 -20.71363 -20.31054 -19.63442 -18.40659 -17.29289 -16.85107 -16.45703 -16.27034 -15.52924 -15.42157 -14.68089 -14.50559 -14.44426 -14.14672 -13.96661 -13.49217 -13.12997 -12.72576 -12.58600 -12.28847 -11.98341 -11.88613 -11.81006 -11.78366 -11.58938 -11.50253 -10.91584 -10.88881 -10.75990 -10.70128 -10.61367 -10.51949 -9.88150 -9.80620 -9.34299 -9.11949 -8.78017 -8.38470 -6.03012 -4.06210 1.80357 2.62168 2.76240 3.29959 3.35560 3.37129 3.40324 4.12845 4.27690 4.42434 4.45664 4.61594 4.73024 4.88235 4.93821 5.04345 5.09055 5.13927 5.32761 5.40695 5.46539 5.55967 5.68043 5.71517 5.76146 5.78896 5.81921 5.95070 6.06672 6.11071 6.14970 6.48256 6.58398 6.82112 6.99099 7.48829 7.62068 7.70593 7.74536 7.95622 8.35571 8.40085 9.00477 9.58083 11.08239 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.039845 B = 0.002406 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.562106 B =11637.100728 C =12201.631565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.023 3.977 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.726 5.726 13 C 0.511 3.489 14 O -0.544 6.544 15 C -0.111 4.111 16 H 0.098 0.902 17 C -0.111 4.111 18 C -0.102 4.102 19 C -0.081 4.081 20 H 0.112 0.888 21 C 0.482 3.518 22 O -0.516 6.516 23 O -0.516 6.516 24 C -0.110 4.110 25 C -0.097 4.097 26 H 0.261 0.739 27 H 0.019 0.981 28 H 0.019 0.981 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.398 0.602 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.409 0.591 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.645 -25.288 1.776 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.007 4.007 12 N -0.376 5.376 13 C 0.296 3.704 14 O -0.422 6.422 15 C -0.132 4.132 16 H 0.116 0.884 17 C -0.148 4.148 18 C -0.140 4.140 19 C -0.100 4.100 20 H 0.130 0.870 21 C 0.325 3.675 22 O -0.403 6.403 23 O -0.328 6.328 24 C -0.147 4.147 25 C -0.135 4.135 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.232 0.768 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.267 0.733 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.644 -24.930 1.778 26.446 hybrid contribution 1.387 0.622 -0.002 1.520 sum 10.031 -24.308 1.776 26.356 Atomic orbital electron populations 1.69967 1.06059 1.26695 1.50550 1.25034 0.94869 0.99327 0.95282 0.86577 0.79793 0.83416 0.78100 1.20656 1.21203 1.19896 1.21201 0.92984 0.90944 1.50936 0.92652 1.19033 0.93859 0.90884 0.97639 1.21884 0.99747 0.93390 1.00842 1.21641 0.91922 0.85207 1.01936 1.46248 1.10765 1.06019 1.74584 1.20555 0.89522 0.84059 0.76220 1.90698 1.16935 1.84842 1.49705 1.21417 0.96962 0.94263 1.00582 0.88408 1.21551 0.97148 0.98812 0.97329 1.21455 0.97279 0.91158 1.04089 1.21167 0.95774 0.90547 1.02555 0.87025 1.23632 0.88988 0.83667 0.71230 1.90730 1.18612 1.85392 1.45605 1.84552 1.45580 1.17174 1.85488 1.21580 0.97390 1.00066 0.95713 1.21341 0.96834 0.91039 1.04289 0.92920 0.96304 0.96280 0.92739 0.92760 0.91826 0.91820 0.76835 0.90821 0.90405 0.90482 0.90566 0.73264 0.91216 0.90104 0.90352 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 10 C -0.12 -2.32 5.27 -26.73 -0.14 -2.46 16 11 C 0.12 1.99 5.67 -4.04 -0.02 1.97 16 12 N -0.73 -9.80 5.45 -60.30 -0.33 -10.13 16 13 C 0.51 6.94 7.15 -10.99 -0.08 6.86 16 14 O -0.54 -9.66 15.98 5.56 0.09 -9.57 16 15 C -0.11 -1.01 2.52 -91.78 -0.23 -1.24 16 16 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 17 C -0.11 -0.84 5.10 -26.73 -0.14 -0.98 16 18 C -0.10 -0.73 4.49 -26.73 -0.12 -0.85 16 19 C -0.08 -0.55 2.63 -91.77 -0.24 -0.79 16 20 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 21 C 0.48 3.82 7.63 36.01 0.27 4.10 16 22 O -0.52 -5.68 16.74 -18.75 -0.31 -5.99 16 23 O -0.52 -3.00 13.32 -39.26 -0.52 -3.52 16 24 C -0.11 -0.73 5.13 -26.71 -0.14 -0.86 16 25 C -0.10 -0.84 4.50 -26.71 -0.12 -0.96 16 26 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.40 4.28 7.89 -40.82 -0.32 3.95 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.08 0.55 7.56 -51.93 -0.39 0.15 16 36 H 0.08 0.57 8.10 -51.93 -0.42 0.14 16 37 H 0.08 0.57 8.10 -51.93 -0.42 0.15 16 38 H 0.41 0.77 9.10 45.56 0.41 1.19 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.49 8.11 -51.93 -0.42 0.07 16 41 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 42 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 LS Contribution 347.82 15.07 5.24 5.24 Total: -1.00 -34.56 347.82 -7.80 -42.36 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: -6.17 Total: -0.69 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -1.50 Total: -8.08 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.41 Total: -36.14 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -0.75 Total: -19.08 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.56 -7.80 -42.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065659.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.138 kcal (2) G-P(sol) polarization free energy of solvation -34.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds