Wall clock time and date at job start Tue Mar 31 2020 05:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48508 * 109.46685 * 269.99639 * 3 2 1 5 5 H 1.48494 * 109.47357 * 29.99718 * 3 2 1 6 6 H 1.48494 * 109.47227 * 150.00236 * 3 2 1 7 7 C 1.37871 * 120.00126 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00197 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99987 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47305 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46969 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.46993 * 180.02562 * 11 10 9 13 13 C 1.34779 * 120.00165 * 179.97438 * 12 11 10 14 14 O 1.21282 * 119.99926 * 0.02562 * 13 12 11 15 15 C 1.50699 * 120.00033 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.47247 * 300.00119 * 15 13 12 17 17 C 1.52997 * 109.47265 * 60.00305 * 15 13 12 18 18 C 1.52999 * 109.47592 * 180.02562 * 17 15 13 19 19 C 1.53006 * 109.46626 * 300.00035 * 18 17 15 20 20 H 1.09000 * 109.47050 * 299.99699 * 19 18 17 21 21 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 22 22 O 1.20828 * 120.00000 * 0.02562 * 21 19 18 23 23 O 1.34231 * 120.00154 * 180.02562 * 21 19 18 24 24 C 1.52997 * 109.47164 * 59.99702 * 19 18 17 25 25 C 1.52996 * 109.46861 * 180.02562 * 15 13 12 26 26 H 0.97005 * 120.00032 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.47043 * 59.99928 * 9 7 2 28 28 H 1.09000 * 109.46974 * 300.00010 * 9 7 2 29 29 H 1.09000 * 109.46497 * 60.00267 * 10 9 7 30 30 H 1.09004 * 109.47059 * 300.00501 * 10 9 7 31 31 H 1.08996 * 109.47452 * 59.99938 * 11 10 9 32 32 H 1.09000 * 109.47054 * 300.00097 * 11 10 9 33 33 H 0.96996 * 119.99985 * 0.02562 * 12 11 10 34 34 H 1.09000 * 109.47140 * 59.99748 * 17 15 13 35 35 H 1.09002 * 109.47045 * 299.99841 * 17 15 13 36 36 H 1.08993 * 109.47839 * 180.02562 * 18 17 15 37 37 H 1.09000 * 109.47160 * 59.99666 * 18 17 15 38 38 H 0.96691 * 116.99942 * 179.97438 * 23 21 19 39 39 H 1.09000 * 109.47140 * 60.00051 * 24 19 18 40 40 H 1.09001 * 109.47230 * 179.97438 * 24 19 18 41 41 H 1.08992 * 109.47534 * 60.00272 * 25 15 13 42 42 H 1.08996 * 109.47134 * 299.99466 * 25 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4802 -4.9871 -0.0001 12 7 2.4322 -6.1006 0.0005 13 6 1.9830 -7.3713 0.0006 14 8 0.7906 -7.5929 -0.0003 15 6 2.9622 -8.5167 0.0007 16 1 3.5889 -8.4591 -0.8893 17 6 3.8419 -8.4357 1.2499 18 6 4.8366 -9.5982 1.2497 19 6 4.0719 -10.9235 1.2494 20 1 3.4453 -10.9816 2.1394 21 6 5.0516 -12.0686 1.2486 22 8 6.2395 -11.8473 1.2487 23 8 4.6047 -13.3343 1.2477 24 6 3.1923 -11.0046 0.0002 25 6 2.1972 -9.8417 0.0001 26 1 -0.4850 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8897 28 1 0.6240 -2.5567 0.8903 29 1 2.8718 -3.6043 0.8906 30 1 2.8720 -3.6043 -0.8894 31 1 0.8539 -5.0446 -0.8903 32 1 0.8532 -5.0450 0.8896 33 1 3.3858 -5.9234 0.0016 34 1 3.2152 -8.4933 2.1399 35 1 4.3869 -7.4917 1.2498 36 1 5.4629 -9.5407 2.1398 37 1 5.4632 -9.5401 0.3597 38 1 5.2709 -14.0351 1.2468 39 1 3.8189 -10.9464 -0.8898 40 1 2.6480 -11.9489 -0.0002 41 1 1.5709 -9.8993 -0.8900 42 1 1.5704 -9.8996 0.8899 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601065659.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:09 Heat of formation + Delta-G solvation = -198.202186 kcal Electronic energy + Delta-G solvation = -21768.920650 eV Core-core repulsion = 18324.940087 eV Total energy + Delta-G solvation = -3443.980563 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.67989 -40.89083 -38.51355 -37.08334 -36.89759 -35.19522 -33.34134 -32.29542 -31.70967 -28.66931 -26.27449 -24.73638 -23.70184 -22.64546 -22.29223 -21.09853 -20.59281 -18.97758 -18.57572 -18.05996 -17.60720 -17.08808 -16.77054 -16.55764 -16.39463 -15.71140 -15.25204 -15.08969 -14.68938 -14.52021 -14.28522 -13.87845 -13.77826 -13.51892 -13.28663 -13.17085 -12.74825 -12.59445 -12.54353 -12.53002 -12.37039 -12.30100 -12.11205 -11.66612 -11.56757 -11.50183 -11.36596 -11.23853 -11.13306 -10.64312 -10.55434 -10.05470 -8.19477 -6.30982 1.21728 1.41956 1.43215 1.54213 1.67216 2.14101 2.26464 2.43210 3.14258 3.53141 3.68891 3.71103 3.94886 4.08983 4.15552 4.22940 4.29423 4.34737 4.44315 4.50362 4.53798 4.56397 4.83245 4.84614 4.95118 5.00028 5.01925 5.12278 5.17237 5.17635 5.23168 5.32500 5.41437 5.47956 5.54862 5.65163 5.71043 5.84412 6.22322 6.62534 6.86790 7.02037 7.30805 7.38723 8.92585 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.039845 B = 0.002406 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.562106 B =11637.100728 C =12201.631565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.005 4.005 3 Si 0.967 3.033 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.023 3.977 10 C -0.101 4.101 11 C 0.129 3.871 12 N -0.715 5.715 13 C 0.509 3.491 14 O -0.590 6.590 15 C -0.101 4.101 16 H 0.120 0.880 17 C -0.105 4.105 18 C -0.096 4.096 19 C -0.082 4.082 20 H 0.122 0.878 21 C 0.489 3.511 22 O -0.550 6.550 23 O -0.513 6.513 24 C -0.099 4.099 25 C -0.095 4.095 26 H 0.263 0.737 27 H -0.009 1.009 28 H -0.009 1.009 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.415 0.585 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.426 0.574 39 H 0.076 0.924 40 H 0.089 0.911 41 H 0.067 0.933 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.939 -25.976 1.804 28.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.184 1.184 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.015 4.015 10 C -0.139 4.139 11 C 0.005 3.995 12 N -0.367 5.367 13 C 0.297 3.703 14 O -0.470 6.470 15 C -0.122 4.122 16 H 0.138 0.862 17 C -0.143 4.143 18 C -0.134 4.134 19 C -0.101 4.101 20 H 0.140 0.860 21 C 0.333 3.667 22 O -0.441 6.441 23 O -0.326 6.326 24 C -0.137 4.137 25 C -0.133 4.133 26 H 0.072 0.928 27 H 0.009 0.991 28 H 0.010 0.990 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.252 0.748 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.287 0.713 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.085 0.915 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.981 -25.656 1.806 27.966 hybrid contribution 0.612 0.760 -0.008 0.976 sum 11.593 -24.896 1.798 27.522 Atomic orbital electron populations 1.70114 1.07944 1.27780 1.51726 1.26036 0.95764 1.03599 0.94829 0.85410 0.78686 0.78271 0.78447 1.19836 1.21078 1.18397 1.21683 0.93751 0.92004 1.50368 0.91512 1.18954 0.94482 0.93073 0.94992 1.21590 0.98382 0.91847 1.02108 1.21199 0.92069 0.85781 1.00468 1.46045 1.11066 1.05221 1.74381 1.21376 0.89668 0.84673 0.74603 1.90683 1.19255 1.85444 1.51627 1.21440 0.96135 0.92188 1.02398 0.86221 1.21530 0.96912 0.99702 0.96162 1.21383 0.96961 0.90944 1.04106 1.21201 0.95643 0.90189 1.03074 0.85982 1.23722 0.88436 0.84326 0.70192 1.90724 1.19997 1.85941 1.47423 1.84516 1.46249 1.17048 1.84803 1.21486 0.96885 0.99396 0.95921 1.21301 0.97088 0.91623 1.03284 0.92828 0.99074 0.99010 0.91316 0.91406 0.93481 0.93402 0.74812 0.91240 0.89392 0.90528 0.90541 0.71254 0.90548 0.89267 0.91466 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.11 13.29 21.44 0.28 -56.83 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 3 Si 0.97 43.65 29.54 68.60 2.03 45.68 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 7 C -0.54 -29.99 9.11 25.60 0.23 -29.76 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.83 5.27 30.59 0.16 -3.67 16 11 C 0.13 4.46 5.67 86.38 0.49 4.95 16 12 N -0.72 -18.44 5.45 -463.07 -2.52 -20.96 16 13 C 0.51 13.39 7.15 87.66 0.63 14.02 16 14 O -0.59 -21.17 15.98 -3.04 -0.05 -21.22 16 15 C -0.10 -1.64 2.52 -11.54 -0.03 -1.67 16 16 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 17 C -0.11 -1.37 5.10 30.59 0.16 -1.21 16 18 C -0.10 -1.15 4.49 30.60 0.14 -1.02 16 19 C -0.08 -0.93 2.63 -11.54 -0.03 -0.96 16 20 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 21 C 0.49 6.77 7.63 71.24 0.54 7.31 16 22 O -0.55 -11.27 16.74 21.96 0.37 -10.90 16 23 O -0.51 -4.78 13.32 -51.43 -0.69 -5.47 16 24 C -0.10 -1.09 5.13 30.61 0.16 -0.94 16 25 C -0.09 -1.51 4.50 30.61 0.14 -1.37 16 26 H 0.26 15.10 8.31 -92.70 -0.77 14.33 16 27 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 28 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 29 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.41 7.89 7.89 -92.71 -0.73 7.16 16 34 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.09 0.98 7.56 -2.39 -0.02 0.97 16 36 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 37 H 0.08 0.94 8.10 -2.39 -0.02 0.92 16 38 H 0.43 0.68 9.10 -74.06 -0.67 0.01 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 0.87 8.11 -2.39 -0.02 0.85 16 41 H 0.07 1.23 8.10 -2.39 -0.02 1.21 16 42 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 Total: -1.00 -75.65 347.82 2.23 -73.42 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -0.39 Total: 9.09 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 3.19 Total: -12.80 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -2.24 Total: -77.79 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -0.37 Total: -37.59 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.68 kcal Total: -75.65 2.23 -73.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601065659.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.783 kcal (2) G-P(sol) polarization free energy of solvation -75.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds