Wall clock time and date at job start Tue Mar 31 2020 05:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99674 * 2 1 4 4 H 1.48502 * 109.47018 * 269.99606 * 3 2 1 5 5 H 1.48492 * 109.47310 * 29.99676 * 3 2 1 6 6 H 1.48498 * 109.46972 * 150.00021 * 3 2 1 7 7 C 1.37871 * 120.00503 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00413 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99826 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46935 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.46591 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99967 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99802 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00090 * 185.08006 * 13 11 10 15 15 H 1.08997 * 109.47191 * 323.50250 * 14 13 11 16 16 C 1.52996 * 109.47227 * 83.50048 * 14 13 11 17 17 C 1.50703 * 109.47422 * 57.19221 * 16 14 13 18 18 O 1.20824 * 119.99662 * 354.12619 * 17 16 14 19 19 O 1.34227 * 120.00297 * 174.12873 * 17 16 14 20 20 C 1.52999 * 109.47071 * 203.50061 * 14 13 11 21 21 C 1.54271 * 110.03192 * 174.78885 * 20 14 13 22 22 C 1.54893 * 104.19642 * 217.10692 * 21 20 14 23 23 C 1.54889 * 102.74829 * 37.94082 * 22 21 20 24 24 C 1.53874 * 110.03343 * 57.62207 * 20 14 13 25 25 H 0.96998 * 120.00430 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47048 * 59.99781 * 9 7 2 27 27 H 1.09007 * 109.46822 * 300.00020 * 9 7 2 28 28 H 1.08993 * 109.47062 * 60.00012 * 10 9 7 29 29 H 1.08999 * 109.46938 * 299.99514 * 10 9 7 30 30 H 0.97003 * 119.99705 * 5.07520 * 13 11 10 31 31 H 1.09005 * 109.47445 * 297.18915 * 16 14 13 32 32 H 1.09008 * 109.47415 * 177.19147 * 16 14 13 33 33 H 0.96695 * 116.99933 * 180.02562 * 19 17 16 34 34 H 1.09002 * 110.01674 * 296.22794 * 20 14 13 35 35 H 1.09002 * 110.48636 * 335.78259 * 21 20 14 36 36 H 1.09000 * 110.48825 * 98.42907 * 21 20 14 37 37 H 1.09000 * 110.75027 * 279.62680 * 22 21 20 38 38 H 1.08998 * 110.91484 * 156.33064 * 22 21 20 39 39 H 1.09000 * 110.48970 * 203.38244 * 23 22 21 40 40 H 1.09002 * 110.60038 * 80.79203 * 23 22 21 41 41 H 1.08997 * 110.03129 * 238.57006 * 24 20 14 42 42 H 1.09002 * 110.02975 * 359.97438 * 24 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4920 -4.9672 0.0025 12 8 0.2792 -4.9672 0.0015 13 7 2.1659 -6.1343 0.0031 14 6 1.4378 -7.4006 -0.1086 15 1 0.4963 -7.3276 0.4357 16 6 1.1531 -7.6969 -1.5824 17 6 2.4508 -7.7296 -2.3480 18 8 3.4844 -7.4319 -1.7978 19 8 2.4582 -8.0894 -3.6412 20 6 2.2836 -8.5292 0.4844 21 6 1.4781 -9.8449 0.4926 22 6 1.8974 -10.5388 1.8124 23 6 2.0192 -9.3513 2.7992 24 6 2.6277 -8.2154 1.9510 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8904 28 1 2.8714 -3.6038 0.8922 29 1 2.8728 -3.6046 -0.8877 30 1 3.1330 -6.1359 0.0775 31 1 0.5092 -6.9185 -1.9918 32 1 0.6556 -8.6630 -1.6693 33 1 3.3146 -8.0956 -4.0901 34 1 3.1982 -8.6542 -0.0952 35 1 0.4081 -9.6371 0.4941 36 1 1.7466 -10.4620 -0.3649 37 1 2.8562 -11.0439 1.6955 38 1 1.1313 -11.2396 2.1440 39 1 2.6827 -9.6079 3.6251 40 1 1.0376 -9.0628 3.1752 41 1 3.7093 -8.1888 2.0832 42 1 2.1924 -7.2587 2.2401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:20 Heat of formation + Delta-G solvation = -160.599293 kcal Electronic energy + Delta-G solvation = -22939.090869 eV Core-core repulsion = 19496.740889 eV Total energy + Delta-G solvation = -3442.349980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.82285 -39.25427 -38.13005 -36.26516 -34.58233 -33.40121 -31.67765 -30.56024 -28.88971 -28.43620 -25.82073 -23.92522 -21.96425 -20.98771 -20.72480 -19.95656 -19.28728 -18.23460 -16.90338 -16.60679 -16.24005 -16.10216 -15.55797 -15.11351 -14.81107 -14.68599 -14.38277 -13.61187 -13.49023 -13.18689 -13.09848 -12.55557 -12.39921 -12.15176 -11.92851 -11.63845 -11.35259 -11.26602 -11.21715 -11.11266 -10.95339 -10.91442 -10.89572 -10.67996 -10.56612 -10.18822 -9.91378 -9.62481 -9.13469 -8.96909 -8.71421 -8.29145 -5.93508 -3.97542 2.13180 2.94832 3.28586 3.35155 3.40992 3.43891 3.60720 4.35926 4.40194 4.49679 4.54782 4.75796 4.96656 5.18742 5.26021 5.29065 5.38766 5.39105 5.41407 5.48654 5.53703 5.58830 5.66365 5.71194 5.78579 5.91464 5.96704 6.10004 6.17227 6.25775 6.29296 6.32403 6.44791 6.84165 6.95911 7.77571 7.79077 7.90032 8.03486 8.10304 8.42538 8.84579 9.11212 9.65838 11.17441 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.003795 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.470029 B = 7376.192893 C = 8086.454143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.038 3.962 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.539 6.539 13 N -0.730 5.730 14 C 0.165 3.835 15 H 0.101 0.899 16 C -0.132 4.132 17 C 0.484 3.516 18 O -0.509 6.509 19 O -0.521 6.521 20 C -0.107 4.107 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.125 4.125 24 C -0.120 4.120 25 H 0.260 0.740 26 H 0.022 0.978 27 H 0.023 0.977 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.405 0.595 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.407 0.593 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.694 -23.232 -0.986 23.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.415 6.415 13 N -0.384 5.384 14 C 0.059 3.941 15 H 0.119 0.881 16 C -0.171 4.171 17 C 0.327 3.673 18 O -0.397 6.397 19 O -0.333 6.333 20 C -0.126 4.126 21 C -0.158 4.158 22 C -0.161 4.161 23 C -0.163 4.163 24 C -0.157 4.157 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.241 0.759 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.266 0.734 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.557 -22.995 -0.639 23.451 hybrid contribution 1.509 0.951 -0.423 1.833 sum 6.066 -22.044 -1.062 22.888 Atomic orbital electron populations 1.69998 1.06032 1.26522 1.50357 1.25018 0.94819 0.99183 0.95346 0.86599 0.79802 0.83554 0.78044 1.20708 1.21230 1.19886 1.21241 0.92945 0.91070 1.51191 0.92649 1.18891 0.93150 0.89390 0.98526 1.21855 1.00681 0.92054 1.02444 1.21588 0.88613 0.85852 0.74182 1.90650 1.14404 1.87756 1.48718 1.46297 1.11019 1.04711 1.76421 1.20790 0.97113 0.84296 0.91901 0.88114 1.22017 0.93298 1.05880 0.95927 1.23495 0.91919 0.72034 0.79850 1.90630 1.35134 1.44675 1.69302 1.84556 1.41475 1.81134 1.26085 1.22226 0.99481 0.93654 0.97245 1.22453 1.00161 0.95391 0.97823 1.22468 1.01110 0.97362 0.95136 1.22370 1.01036 0.95157 0.97720 1.22172 1.00805 0.99243 0.93528 0.92995 0.95927 0.95821 0.90359 0.90396 0.75940 0.86837 0.87225 0.73404 0.89194 0.91029 0.91792 0.91685 0.91651 0.91889 0.91558 0.91782 0.90957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.69 13.29 55.43 0.74 -26.96 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -15.20 9.11 -34.44 -0.31 -15.51 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 10 C -0.13 -2.75 5.64 -27.88 -0.16 -2.90 16 11 C 0.51 9.85 7.77 -10.98 -0.09 9.76 16 12 O -0.54 -12.37 15.64 5.56 0.09 -12.28 16 13 N -0.73 -10.67 3.33 -53.81 -0.18 -10.85 16 14 C 0.16 2.00 1.48 -67.94 -0.10 1.90 16 15 H 0.10 1.35 7.48 -51.93 -0.39 0.96 16 16 C -0.13 -1.45 5.59 -27.88 -0.16 -1.60 16 17 C 0.48 5.48 7.77 36.01 0.28 5.76 16 18 O -0.51 -6.66 13.31 -18.75 -0.25 -6.91 16 19 O -0.52 -4.80 13.42 -39.25 -0.53 -5.33 16 20 C -0.11 -1.06 2.27 -89.50 -0.20 -1.26 16 21 C -0.12 -0.97 5.36 -25.07 -0.13 -1.10 16 22 C -0.12 -0.94 6.91 -24.74 -0.17 -1.11 16 23 C -0.13 -1.09 6.83 -25.07 -0.17 -1.26 16 24 C -0.12 -1.21 6.15 -25.61 -0.16 -1.37 16 25 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 26 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 27 H 0.02 0.70 8.10 -51.92 -0.42 0.28 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 30 H 0.40 5.52 7.54 -40.82 -0.31 5.21 16 31 H 0.11 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.11 0.89 7.33 -51.92 -0.38 0.51 16 33 H 0.41 2.11 9.10 45.56 0.41 2.53 16 34 H 0.09 0.97 5.96 -51.93 -0.31 0.66 16 35 H 0.07 0.56 7.80 -51.93 -0.41 0.15 16 36 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.85 7.29 -51.93 -0.38 0.48 16 LS Contribution 342.47 15.07 5.16 5.16 Total: -1.00 -34.82 342.47 -7.52 -42.34 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -5.94 Total: 4.08 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: -1.59 Total: -6.18 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: 0.56 Total: -37.81 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.69 Total: -24.52 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.82 -7.52 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.262 kcal (2) G-P(sol) polarization free energy of solvation -34.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds