Wall clock time and date at job start Tue Mar 31 2020 05:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86807 * 119.99674 * 2 1 4 4 H 1.48502 * 109.47018 * 269.99606 * 3 2 1 5 5 H 1.48492 * 109.47310 * 29.99676 * 3 2 1 6 6 H 1.48498 * 109.46972 * 150.00021 * 3 2 1 7 7 C 1.37871 * 120.00503 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00413 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99826 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.46935 * 180.02562 * 9 7 2 11 11 C 1.50709 * 109.46591 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99967 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99802 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00090 * 185.08006 * 13 11 10 15 15 H 1.08997 * 109.47191 * 323.50250 * 14 13 11 16 16 C 1.52996 * 109.47227 * 83.50048 * 14 13 11 17 17 C 1.50703 * 109.47422 * 57.19221 * 16 14 13 18 18 O 1.20824 * 119.99662 * 354.12619 * 17 16 14 19 19 O 1.34227 * 120.00297 * 174.12873 * 17 16 14 20 20 C 1.52999 * 109.47071 * 203.50061 * 14 13 11 21 21 C 1.54271 * 110.03192 * 174.78885 * 20 14 13 22 22 C 1.54893 * 104.19642 * 217.10692 * 21 20 14 23 23 C 1.54889 * 102.74829 * 37.94082 * 22 21 20 24 24 C 1.53874 * 110.03343 * 57.62207 * 20 14 13 25 25 H 0.96998 * 120.00430 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47048 * 59.99781 * 9 7 2 27 27 H 1.09007 * 109.46822 * 300.00020 * 9 7 2 28 28 H 1.08993 * 109.47062 * 60.00012 * 10 9 7 29 29 H 1.08999 * 109.46938 * 299.99514 * 10 9 7 30 30 H 0.97003 * 119.99705 * 5.07520 * 13 11 10 31 31 H 1.09005 * 109.47445 * 297.18915 * 16 14 13 32 32 H 1.09008 * 109.47415 * 177.19147 * 16 14 13 33 33 H 0.96695 * 116.99933 * 180.02562 * 19 17 16 34 34 H 1.09002 * 110.01674 * 296.22794 * 20 14 13 35 35 H 1.09002 * 110.48636 * 335.78259 * 21 20 14 36 36 H 1.09000 * 110.48825 * 98.42907 * 21 20 14 37 37 H 1.09000 * 110.75027 * 279.62680 * 22 21 20 38 38 H 1.08998 * 110.91484 * 156.33064 * 22 21 20 39 39 H 1.09000 * 110.48970 * 203.38244 * 23 22 21 40 40 H 1.09002 * 110.60038 * 80.79203 * 23 22 21 41 41 H 1.08997 * 110.03129 * 238.57006 * 24 20 14 42 42 H 1.09002 * 110.02975 * 359.97438 * 24 20 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0018 11 6 1.4920 -4.9672 0.0025 12 8 0.2792 -4.9672 0.0015 13 7 2.1659 -6.1343 0.0031 14 6 1.4378 -7.4006 -0.1086 15 1 0.4963 -7.3276 0.4357 16 6 1.1531 -7.6969 -1.5824 17 6 2.4508 -7.7296 -2.3480 18 8 3.4844 -7.4319 -1.7978 19 8 2.4582 -8.0894 -3.6412 20 6 2.2836 -8.5292 0.4844 21 6 1.4781 -9.8449 0.4926 22 6 1.8974 -10.5388 1.8124 23 6 2.0192 -9.3513 2.7992 24 6 2.6277 -8.2154 1.9510 25 1 -0.4851 0.8400 -0.0004 26 1 0.6248 -2.5571 -0.8897 27 1 0.6241 -2.5567 0.8904 28 1 2.8714 -3.6038 0.8922 29 1 2.8728 -3.6046 -0.8877 30 1 3.1330 -6.1359 0.0775 31 1 0.5092 -6.9185 -1.9918 32 1 0.6556 -8.6630 -1.6693 33 1 3.3146 -8.0956 -4.0901 34 1 3.1982 -8.6542 -0.0952 35 1 0.4081 -9.6371 0.4941 36 1 1.7466 -10.4620 -0.3649 37 1 2.8562 -11.0439 1.6955 38 1 1.1313 -11.2396 2.1440 39 1 2.6827 -9.6079 3.6251 40 1 1.0376 -9.0628 3.1752 41 1 3.7093 -8.1888 2.0832 42 1 2.1924 -7.2587 2.2401 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601067555.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:19:19 Heat of formation + Delta-G solvation = -184.066674 kcal Electronic energy + Delta-G solvation = -22940.108491 eV Core-core repulsion = 19496.740889 eV Total energy + Delta-G solvation = -3443.367602 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80961 -40.48059 -39.16773 -37.10408 -35.80275 -35.46809 -33.28148 -32.16945 -29.68902 -29.18946 -27.76514 -25.12217 -23.54871 -22.16367 -21.49638 -21.04161 -20.53193 -19.10008 -18.79265 -17.69153 -17.52135 -17.02788 -16.84166 -16.52420 -16.28895 -16.04920 -15.59751 -14.87042 -14.60929 -14.22733 -14.15065 -14.04878 -13.88774 -13.47123 -13.23169 -13.04077 -12.81655 -12.50203 -12.47700 -12.13176 -11.94484 -11.93767 -11.91697 -11.78437 -11.69225 -11.63509 -11.40405 -11.30976 -11.05813 -10.67105 -10.57417 -10.03045 -8.18624 -6.32646 1.24469 1.41056 1.43810 1.54897 1.71321 2.14068 2.31314 2.45256 3.14033 3.50265 3.61522 3.80425 3.91258 4.09435 4.23953 4.35154 4.46336 4.48638 4.52880 4.57255 4.60523 4.63952 4.75336 4.80847 4.89202 4.91395 5.04117 5.10025 5.11649 5.28358 5.31845 5.45953 5.48332 5.51808 5.60976 5.62989 5.68202 5.84721 6.17752 6.65467 6.85177 7.03427 7.35885 7.38189 8.93913 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.003795 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.470029 B = 7376.192893 C = 8086.454143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.045 3.955 10 C -0.122 4.122 11 C 0.512 3.488 12 O -0.583 6.583 13 N -0.708 5.708 14 C 0.161 3.839 15 H 0.086 0.914 16 C -0.132 4.132 17 C 0.488 3.512 18 O -0.530 6.530 19 O -0.516 6.516 20 C -0.097 4.097 21 C -0.118 4.118 22 C -0.119 4.119 23 C -0.126 4.126 24 C -0.123 4.123 25 H 0.263 0.737 26 H -0.017 1.017 27 H -0.015 1.015 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.413 0.587 31 H 0.094 0.906 32 H 0.143 0.857 33 H 0.426 0.574 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.722 -24.494 -1.344 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.797 3.203 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.181 1.181 7 C -0.583 4.583 8 H 0.090 0.910 9 C 0.008 3.992 10 C -0.162 4.162 11 C 0.301 3.699 12 O -0.463 6.463 13 N -0.361 5.361 14 C 0.056 3.944 15 H 0.104 0.896 16 C -0.170 4.170 17 C 0.331 3.669 18 O -0.420 6.420 19 O -0.330 6.330 20 C -0.116 4.116 21 C -0.156 4.156 22 C -0.156 4.156 23 C -0.163 4.163 24 C -0.160 4.160 25 H 0.072 0.928 26 H 0.002 0.998 27 H 0.003 0.997 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.250 0.750 31 H 0.112 0.888 32 H 0.160 0.840 33 H 0.288 0.712 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 6.639 -24.313 -1.017 25.224 hybrid contribution 0.870 1.274 -0.341 1.580 sum 7.509 -23.039 -1.358 24.270 Atomic orbital electron populations 1.70168 1.08207 1.27822 1.51369 1.26109 0.95743 1.03820 0.94566 0.85333 0.78656 0.77793 0.78538 1.19689 1.20945 1.18112 1.21706 0.93867 0.91797 1.50970 0.91019 1.18662 0.93565 0.92200 0.94797 1.21625 0.99415 0.90934 1.04180 1.21205 0.87831 0.86672 0.74225 1.90637 1.16100 1.88346 1.51247 1.46069 1.11316 1.04427 1.74242 1.20990 0.96681 0.83560 0.93139 0.89585 1.21962 0.93411 1.06986 0.94662 1.23409 0.91459 0.71621 0.80397 1.90624 1.35748 1.45743 1.69884 1.84508 1.43027 1.80458 1.25038 1.22156 0.99164 0.93600 0.96675 1.22478 0.99992 0.94308 0.98856 1.22463 1.01933 0.96960 0.94251 1.22375 1.00719 0.95142 0.98105 1.22184 1.01027 0.98771 0.94047 0.92798 0.99809 0.99685 0.88342 0.88767 0.74976 0.88771 0.83961 0.71217 0.89377 0.90777 0.90211 0.90930 0.90466 0.91103 0.92225 0.91334 0.93230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.92 13.29 21.45 0.28 -59.63 16 2 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 3 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 7 C -0.55 -31.89 9.11 25.60 0.23 -31.66 16 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.05 2.59 4.26 29.85 0.13 2.72 16 10 C -0.12 -5.19 5.64 29.85 0.17 -5.02 16 11 C 0.51 20.35 7.77 87.66 0.68 21.03 16 12 O -0.58 -28.13 15.64 -3.02 -0.05 -28.18 16 13 N -0.71 -20.62 3.33 -442.55 -1.48 -22.10 16 14 C 0.16 3.83 1.48 44.99 0.07 3.90 16 15 H 0.09 2.35 7.48 -2.39 -0.02 2.34 16 16 C -0.13 -2.74 5.59 29.85 0.17 -2.58 16 17 C 0.49 10.19 7.77 71.24 0.55 10.74 16 18 O -0.53 -12.95 13.31 21.97 0.29 -12.66 16 19 O -0.52 -8.36 13.42 -51.39 -0.69 -9.05 16 20 C -0.10 -1.78 2.27 -10.07 -0.02 -1.80 16 21 C -0.12 -1.62 5.36 31.67 0.17 -1.45 16 22 C -0.12 -1.51 6.91 31.89 0.22 -1.29 16 23 C -0.13 -2.01 6.83 31.67 0.22 -1.79 16 24 C -0.12 -2.36 6.15 31.32 0.19 -2.17 16 25 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 26 H -0.02 -1.06 8.10 -2.39 -0.02 -1.08 16 27 H -0.02 -0.98 8.10 -2.38 -0.02 -1.00 16 28 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 29 H 0.09 3.69 8.14 -2.39 -0.02 3.67 16 30 H 0.41 10.89 7.54 -92.71 -0.70 10.19 16 31 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 32 H 0.14 1.99 7.33 -2.38 -0.02 1.97 16 33 H 0.43 3.36 9.10 -74.06 -0.67 2.69 16 34 H 0.09 1.71 5.96 -2.39 -0.01 1.70 16 35 H 0.07 1.00 7.80 -2.39 -0.02 0.98 16 36 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 40 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.18 7.29 -2.39 -0.02 1.16 16 Total: -1.00 -77.74 342.47 3.28 -74.46 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -0.34 Total: 19.26 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 3.23 Total: -9.18 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -1.19 Total: -81.73 kcal Atomic # 8 Polarization: -49.44 SS G_CDS: -0.44 Total: -49.88 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -77.74 3.28 -74.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067555.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.610 kcal (2) G-P(sol) polarization free energy of solvation -77.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds