Wall clock time and date at job start Tue Mar 31 2020 05:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86794 * 120.00328 * 2 1 4 4 H 1.48493 * 109.47492 * 89.99856 * 3 2 1 5 5 H 1.48504 * 109.47157 * 210.00216 * 3 2 1 6 6 H 1.48506 * 109.47162 * 329.99830 * 3 2 1 7 7 C 1.37884 * 119.99949 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00105 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99632 * 359.97438 * 7 2 1 10 10 N 1.46906 * 109.47246 * 177.53193 * 9 7 2 11 11 C 1.46847 * 110.99569 * 300.53876 * 10 9 7 12 12 C 1.53045 * 109.51687 * 185.83527 * 11 10 9 13 13 C 1.53110 * 109.27808 * 300.81498 * 12 11 10 14 14 H 1.08994 * 109.53152 * 297.75387 * 13 12 11 15 15 C 1.50703 * 109.52381 * 177.56194 * 13 12 11 16 16 O 1.20829 * 120.00261 * 240.32235 * 15 13 12 17 17 O 1.34229 * 119.99950 * 60.31281 * 15 13 12 18 18 C 1.53127 * 109.16127 * 57.66067 * 13 12 11 19 19 C 1.46848 * 110.99599 * 64.74222 * 10 9 7 20 20 H 1.08996 * 109.46554 * 294.18140 * 19 10 9 21 21 C 1.53005 * 109.46341 * 54.15889 * 19 10 9 22 22 H 1.09002 * 109.86917 * 293.26322 * 21 19 10 23 23 C 1.54104 * 109.87712 * 54.26940 * 21 19 10 24 24 C 1.54804 * 104.18843 * 121.45308 * 23 21 19 25 25 C 1.54995 * 102.09112 * 20.88067 * 24 23 21 26 26 O 1.43735 * 109.88028 * 172.09813 * 21 19 10 27 27 H 0.96997 * 119.99555 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47342 * 297.52882 * 9 7 2 29 29 H 1.09000 * 109.47494 * 57.53725 * 9 7 2 30 30 H 1.08994 * 109.45997 * 305.84704 * 11 10 9 31 31 H 1.08999 * 109.46301 * 65.82056 * 11 10 9 32 32 H 1.09003 * 109.49539 * 180.87880 * 12 11 10 33 33 H 1.08995 * 109.53621 * 60.78213 * 12 11 10 34 34 H 0.96695 * 117.00339 * 179.97438 * 17 15 13 35 35 H 1.08995 * 109.50250 * 182.40024 * 18 13 12 36 36 H 1.08994 * 109.50315 * 62.28123 * 18 13 12 37 37 H 1.09006 * 110.48619 * 240.13215 * 23 21 19 38 38 H 1.09001 * 110.48665 * 2.77232 * 23 21 19 39 39 H 1.09005 * 110.90668 * 139.07898 * 24 23 21 40 40 H 1.09000 * 110.90978 * 262.68093 * 24 23 21 41 41 H 1.09005 * 110.61742 * 81.47877 * 25 24 23 42 42 H 1.09007 * 110.61748 * 204.31526 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5468 1.4400 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2044 -3.6152 -0.0608 11 6 3.0307 -3.5364 -1.2722 12 6 3.9073 -4.7868 -1.3753 13 6 4.7973 -4.8840 -0.1333 14 1 5.4585 -4.0185 -0.0902 15 6 5.6199 -6.1449 -0.2006 16 8 5.5116 -6.9838 0.6622 17 8 6.4729 -6.3362 -1.2192 18 6 3.9138 -4.9156 1.1170 19 6 3.0371 -3.6617 1.1479 20 1 3.6712 -2.7760 1.1864 21 6 2.1379 -3.6990 2.3853 22 1 1.5982 -2.7567 2.4796 23 6 1.1384 -4.8663 2.2717 24 6 1.4230 -5.7328 3.5226 25 6 2.1319 -4.7239 4.4618 26 8 2.9329 -3.9300 3.5603 27 1 -0.4849 0.8401 -0.0004 28 1 0.6583 -2.5765 0.9110 29 1 0.5913 -2.5378 -0.8673 30 1 2.3855 -3.4720 -2.1483 31 1 3.6649 -2.6514 -1.2223 32 1 4.5317 -4.7207 -2.2663 33 1 3.2740 -5.6716 -1.4395 34 1 6.9791 -7.1600 -1.2192 35 1 4.5430 -4.9418 2.0066 36 1 3.2802 -5.8021 1.0924 37 1 0.1138 -4.4945 2.2901 38 1 1.3213 -5.4380 1.3618 39 1 0.4945 -6.0915 3.9668 40 1 2.0824 -6.5653 3.2773 41 1 1.4012 -4.1001 4.9767 42 1 2.7629 -5.2468 5.1806 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:05 Heat of formation + Delta-G solvation = -142.304077 kcal Electronic energy + Delta-G solvation = -24165.927285 eV Core-core repulsion = 20724.370646 eV Total energy + Delta-G solvation = -3441.556640 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50548 -39.44006 -37.55332 -36.06567 -33.88238 -32.18620 -31.60257 -31.10117 -27.71583 -27.03922 -24.89549 -23.41567 -22.38788 -21.37247 -21.12401 -20.20886 -18.74328 -17.89081 -16.64617 -16.46232 -15.94386 -15.51388 -15.12865 -15.08796 -14.86149 -14.12553 -14.02732 -13.46832 -13.26134 -13.14426 -12.72604 -12.69670 -12.19758 -11.80880 -11.51045 -11.31240 -11.25964 -11.12228 -11.00999 -10.92811 -10.77414 -10.72047 -10.53813 -10.31237 -10.20686 -10.09509 -9.87677 -9.79755 -9.58009 -8.97466 -8.44498 -7.25691 -6.06890 -4.15931 2.30364 3.13546 3.25852 3.33064 3.35449 4.19424 4.38057 4.87010 4.96231 5.06679 5.09717 5.18810 5.23995 5.30400 5.38741 5.51230 5.61756 5.71245 5.76500 5.93103 5.95471 6.00656 6.03471 6.13641 6.19840 6.25090 6.41999 6.44819 6.48828 6.55424 6.58515 6.66632 6.74340 6.90438 7.19221 7.39502 7.49915 7.86006 7.96054 7.99060 8.20781 8.23503 8.93726 9.51527 10.98042 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.006743 C = 0.005146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.768455 B = 4151.495299 C = 5440.230077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.275 1.275 6 H -0.286 1.286 7 C -0.550 4.550 8 H 0.057 0.943 9 C 0.183 3.817 10 N -0.533 5.533 11 C 0.067 3.933 12 C -0.107 4.107 13 C -0.080 4.080 14 H 0.104 0.896 15 C 0.484 3.516 16 O -0.518 6.518 17 O -0.518 6.518 18 C -0.090 4.090 19 C 0.099 3.901 20 H 0.052 0.948 21 C 0.087 3.913 22 H 0.084 0.916 23 C -0.139 4.139 24 C -0.158 4.158 25 C 0.048 3.952 26 O -0.378 6.378 27 H 0.262 0.738 28 H 0.035 0.965 29 H 0.034 0.966 30 H 0.074 0.926 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.403 0.597 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.055 0.945 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.668 -11.348 1.390 13.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.206 1.206 5 H -0.199 1.199 6 H -0.212 1.212 7 C -0.589 4.589 8 H 0.075 0.925 9 C 0.058 3.942 10 N -0.259 5.259 11 C -0.061 4.061 12 C -0.145 4.145 13 C -0.099 4.099 14 H 0.122 0.878 15 C 0.327 3.673 16 O -0.406 6.406 17 O -0.329 6.329 18 C -0.127 4.127 19 C -0.011 4.011 20 H 0.070 0.930 21 C 0.030 3.970 22 H 0.102 0.898 23 C -0.176 4.176 24 C -0.195 4.195 25 C -0.029 4.029 26 O -0.296 6.296 27 H 0.072 0.928 28 H 0.053 0.947 29 H 0.052 0.948 30 H 0.093 0.907 31 H 0.062 0.938 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.261 0.739 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.182 -11.445 1.642 13.111 hybrid contribution 1.044 1.224 0.032 1.609 sum 7.226 -10.221 1.674 12.629 Atomic orbital electron populations 1.69932 1.05982 1.26867 1.50042 1.24931 0.94728 0.99085 0.94833 0.86679 0.79942 0.83727 0.78201 1.20622 1.19946 1.21182 1.21725 0.93325 0.92041 1.51839 0.92493 1.19843 0.90852 0.85334 0.98219 1.62472 1.16947 1.46581 0.99868 1.21840 0.95382 0.94731 0.94196 1.21670 0.97263 1.00637 0.94897 1.21219 0.96311 0.92604 0.99802 0.87811 1.23826 0.77030 0.88813 0.77623 1.90690 1.65135 1.45504 1.39226 1.84587 1.53167 1.46203 1.48973 1.21519 0.97109 0.99403 0.94715 1.21315 0.93495 0.96056 0.90187 0.93007 1.22759 0.90979 0.98670 0.84615 0.89827 1.22883 0.99608 0.96547 0.98602 1.23166 1.00685 0.98878 0.96808 1.23438 0.94353 0.92037 0.93036 1.88805 1.39710 1.72785 1.28343 0.92797 0.94657 0.94828 0.90712 0.93751 0.91052 0.91239 0.73884 0.90802 0.90774 0.91180 0.89093 0.91022 0.90945 0.92711 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.23 13.29 55.43 0.74 -24.50 16 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 3 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.55 -14.31 7.73 -34.44 -0.27 -14.57 16 8 H 0.06 1.48 5.84 -52.49 -0.31 1.17 16 9 C 0.18 4.35 4.66 -4.97 -0.02 4.32 16 10 N -0.53 -10.42 3.81 -228.12 -0.87 -11.28 16 11 C 0.07 1.19 5.03 -3.83 -0.02 1.17 16 12 C -0.11 -1.54 5.31 -26.65 -0.14 -1.68 16 13 C -0.08 -1.17 2.70 -91.65 -0.25 -1.42 16 14 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 15 C 0.48 6.76 7.63 36.01 0.27 7.04 16 16 O -0.52 -8.56 16.73 -18.75 -0.31 -8.88 16 17 O -0.52 -5.64 13.36 -39.25 -0.52 -6.16 16 18 C -0.09 -1.47 3.53 -26.65 -0.09 -1.57 16 19 C 0.10 1.85 1.52 -67.72 -0.10 1.75 16 20 H 0.05 1.10 6.90 -51.93 -0.36 0.74 16 21 C 0.09 1.62 2.66 -26.15 -0.07 1.55 16 22 H 0.08 1.81 6.66 -51.93 -0.35 1.46 16 23 C -0.14 -2.24 5.39 -25.20 -0.14 -2.38 16 24 C -0.16 -2.12 7.15 -24.73 -0.18 -2.30 16 25 C 0.05 0.68 7.72 38.21 0.29 0.98 16 26 O -0.38 -6.78 10.23 -35.23 -0.36 -7.14 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.04 0.89 5.81 -51.93 -0.30 0.59 16 29 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.34 8.12 -51.93 -0.42 0.91 16 31 H 0.04 0.86 6.69 -51.93 -0.35 0.51 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.40 2.56 9.10 45.56 0.41 2.98 16 35 H 0.07 1.26 7.55 -51.93 -0.39 0.87 16 36 H 0.07 1.25 6.67 -51.93 -0.35 0.90 16 37 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.09 1.52 6.22 -51.93 -0.32 1.19 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 325.91 15.07 4.91 4.91 Total: -1.00 -29.93 325.91 -7.91 -37.84 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.67 Total: 4.65 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -0.80 Total: -5.39 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.13 Total: -35.78 kcal Atomic # 8 Polarization: -20.98 SS G_CDS: -1.20 Total: -22.18 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.93 -7.91 -37.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.467 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds