Wall clock time and date at job start Tue Mar 31 2020 05:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00213 * 2 1 4 4 H 1.48501 * 109.47165 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47192 * 300.00682 * 3 2 1 6 6 H 1.48498 * 109.46832 * 60.00417 * 3 2 1 7 7 C 1.37876 * 119.99991 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00560 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99843 * 359.97438 * 7 2 1 10 10 N 1.46895 * 109.46857 * 174.34819 * 9 7 2 11 11 C 1.46842 * 111.00506 * 316.58962 * 10 9 7 12 12 C 1.53033 * 109.52699 * 174.16296 * 11 10 9 13 13 C 1.53118 * 109.27948 * 59.17925 * 12 11 10 14 14 H 1.09002 * 109.52269 * 182.37363 * 13 12 11 15 15 C 1.50705 * 109.52097 * 62.25043 * 13 12 11 16 16 O 1.20830 * 119.99931 * 239.99801 * 15 13 12 17 17 O 1.34223 * 120.00081 * 60.00501 * 15 13 12 18 18 C 1.53114 * 109.16047 * 302.34649 * 13 12 11 19 19 C 1.46855 * 110.99700 * 192.37753 * 10 9 7 20 20 H 1.08997 * 109.45943 * 65.83992 * 19 10 9 21 21 C 1.52994 * 109.46628 * 305.85443 * 19 10 9 22 22 H 1.09001 * 109.82284 * 309.50752 * 21 19 10 23 23 C 1.54383 * 109.82881 * 70.48390 * 21 19 10 24 24 C 1.55559 * 102.27896 * 140.87179 * 23 21 19 25 25 C 1.54949 * 100.82411 * 325.88493 * 24 23 21 26 26 O 1.43236 * 109.83429 * 188.61499 * 21 19 10 27 27 H 0.97004 * 119.99835 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47015 * 54.34982 * 9 7 2 29 29 H 1.09000 * 109.46968 * 294.34796 * 9 7 2 30 30 H 1.09002 * 109.45737 * 294.18127 * 11 10 9 31 31 H 1.09004 * 109.46188 * 54.14608 * 11 10 9 32 32 H 1.09005 * 109.50395 * 179.12192 * 12 11 10 33 33 H 1.09001 * 109.50137 * 299.23584 * 12 11 10 34 34 H 0.96698 * 117.00132 * 179.97438 * 17 15 13 35 35 H 1.09006 * 109.50562 * 297.71066 * 18 13 12 36 36 H 1.08999 * 109.50354 * 177.59639 * 18 13 12 37 37 H 1.09006 * 110.85020 * 259.06116 * 23 21 19 38 38 H 1.08998 * 110.84672 * 22.67994 * 23 21 19 39 39 H 1.08993 * 111.22872 * 207.98654 * 24 23 21 40 40 H 1.09003 * 111.13655 * 83.73932 * 24 23 21 41 41 H 1.09003 * 110.30568 * 277.47943 * 25 24 23 42 42 H 1.08998 * 110.31565 * 155.40414 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.1997 -3.6123 -0.1375 11 6 3.2144 -3.3166 -1.1569 12 6 4.2654 -4.4288 -1.1702 13 6 3.5832 -5.7653 -1.4750 14 1 4.3216 -6.5666 -1.4439 15 6 2.9572 -5.7104 -2.8448 16 8 1.7662 -5.8698 -2.9716 17 8 3.7227 -5.4844 -3.9240 18 6 2.4983 -6.0264 -0.4267 19 6 1.4984 -4.8678 -0.4349 20 1 1.0309 -4.7988 -1.4171 21 6 0.4233 -5.1147 0.6252 22 1 0.8564 -5.0171 1.6207 23 6 -0.7271 -4.1000 0.4508 24 6 -1.9834 -4.9717 0.7364 25 6 -1.5291 -6.3353 0.1574 26 8 -0.1283 -6.4265 0.4617 27 1 -0.4850 0.8401 0.0004 28 1 0.5503 -2.5141 -0.8353 29 1 0.7027 -2.6021 0.9359 30 1 2.7386 -3.2547 -2.1357 31 1 3.6948 -2.3657 -0.9261 32 1 5.0099 -4.2169 -1.9376 33 1 4.7512 -4.4820 -0.1959 34 1 3.2762 -5.4583 -4.7813 35 1 2.9562 -6.1048 0.5594 36 1 1.9802 -6.9559 -0.6628 37 1 -0.6438 -3.2906 1.1761 38 1 -0.7491 -3.7097 -0.5667 39 1 -2.8565 -4.5912 0.2065 40 1 -2.1764 -5.0442 1.8067 41 1 -1.6842 -6.3588 -0.9213 42 1 -2.0738 -7.1496 0.6351 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:09 Heat of formation + Delta-G solvation = -125.089594 kcal Electronic energy + Delta-G solvation = -24483.901703 eV Core-core repulsion = 21043.091539 eV Total energy + Delta-G solvation = -3440.810164 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.67640 -39.26956 -37.41659 -35.89644 -33.98725 -32.28834 -31.43822 -31.17676 -27.63855 -27.28937 -24.93924 -22.99753 -22.87751 -21.25603 -20.66413 -20.18384 -19.15971 -17.73061 -16.60374 -16.17159 -16.01464 -15.76283 -15.36017 -15.07764 -14.29989 -14.11410 -13.75889 -13.47055 -12.97301 -12.86300 -12.71994 -12.59727 -12.46914 -12.02053 -11.76317 -11.50926 -11.31316 -11.21252 -10.93842 -10.85527 -10.83750 -10.59505 -10.48924 -10.27624 -10.07109 -9.97823 -9.87457 -9.53425 -9.03337 -8.74428 -8.46188 -7.13159 -6.07924 -4.08852 2.43779 3.24712 3.26910 3.35023 3.38366 4.18196 4.39337 4.80549 4.97493 5.04859 5.10408 5.25193 5.26128 5.32205 5.39441 5.54862 5.66394 5.73912 5.82295 5.97511 5.98187 6.05299 6.11476 6.17378 6.21331 6.25971 6.27101 6.46964 6.53997 6.59771 6.61466 6.73168 6.77516 6.93939 7.33583 7.46155 7.55226 7.74163 8.02899 8.10149 8.19702 8.56982 8.98853 9.55452 11.02767 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.007554 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.727781 B = 3705.570675 C = 5243.800553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.067 0.933 9 C 0.179 3.821 10 N -0.533 5.533 11 C 0.061 3.939 12 C -0.111 4.111 13 C -0.080 4.080 14 H 0.102 0.898 15 C 0.480 3.520 16 O -0.507 6.507 17 O -0.520 6.520 18 C -0.088 4.088 19 C 0.066 3.934 20 H 0.058 0.942 21 C 0.094 3.906 22 H 0.083 0.917 23 C -0.148 4.148 24 C -0.161 4.161 25 C 0.052 3.948 26 O -0.380 6.380 27 H 0.260 0.740 28 H -0.001 1.001 29 H 0.045 0.955 30 H 0.015 0.985 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.404 0.596 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.100 0.900 38 H 0.081 0.919 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.054 0.946 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.312 -11.702 -2.573 12.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.085 0.915 9 C 0.055 3.945 10 N -0.259 5.259 11 C -0.067 4.067 12 C -0.149 4.149 13 C -0.099 4.099 14 H 0.120 0.880 15 C 0.323 3.677 16 O -0.394 6.394 17 O -0.331 6.331 18 C -0.126 4.126 19 C -0.043 4.043 20 H 0.075 0.925 21 C 0.036 3.964 22 H 0.101 0.899 23 C -0.185 4.185 24 C -0.199 4.199 25 C -0.024 4.024 26 O -0.299 6.299 27 H 0.070 0.930 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.033 0.967 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.262 0.738 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.072 0.928 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.365 -11.891 -1.753 12.481 hybrid contribution -0.542 1.345 -1.517 2.099 sum 2.823 -10.546 -3.270 11.396 Atomic orbital electron populations 1.69958 1.05963 1.26625 1.50727 1.24971 0.94858 0.99216 0.95303 0.86508 0.80113 0.83677 0.77527 1.19679 1.21180 1.20987 1.21421 0.93482 0.90405 1.50560 0.91532 1.20264 0.90670 0.86864 0.96732 1.62037 1.16081 1.02946 1.44874 1.22062 0.93116 0.98610 0.92941 1.21745 0.98179 0.92261 1.02733 1.21218 0.99468 1.01452 0.87789 0.88011 1.23722 0.85411 0.71493 0.87092 1.90691 1.16777 1.45362 1.86592 1.84545 1.45751 1.84177 1.18673 1.21434 0.94888 0.99043 0.97248 1.22046 0.93556 0.90821 0.97871 0.92472 1.22618 0.93534 0.81517 0.98720 0.89900 1.23671 0.91992 0.98215 1.04632 1.23372 0.99385 0.95744 1.01369 1.23284 0.82582 0.97314 0.99246 1.88340 1.22167 1.27733 1.91656 0.92997 0.98313 0.93746 0.96665 0.88259 0.91092 0.89768 0.73842 0.90181 0.90694 0.88169 0.90021 0.90511 0.90944 0.92802 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.61 13.29 55.43 0.74 -24.88 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.00 8.31 -34.44 -0.29 -14.28 16 8 H 0.07 1.75 5.76 -52.49 -0.30 1.45 16 9 C 0.18 4.46 3.42 -4.98 -0.02 4.44 16 10 N -0.53 -11.24 4.65 -228.13 -1.06 -12.30 16 11 C 0.06 1.19 4.83 -3.84 -0.02 1.17 16 12 C -0.11 -1.67 5.55 -26.65 -0.15 -1.82 16 13 C -0.08 -1.15 3.14 -91.65 -0.29 -1.44 16 14 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 15 C 0.48 7.49 6.23 36.01 0.22 7.71 16 16 O -0.51 -9.49 14.57 -18.75 -0.27 -9.77 16 17 O -0.52 -6.53 13.29 -39.24 -0.52 -7.05 16 18 C -0.09 -1.43 4.26 -26.65 -0.11 -1.54 16 19 C 0.07 1.27 1.51 -67.72 -0.10 1.17 16 20 H 0.06 1.26 5.53 -51.93 -0.29 0.98 16 21 C 0.09 1.74 3.02 -26.01 -0.08 1.66 16 22 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 23 C -0.15 -2.81 4.50 -24.65 -0.11 -2.92 16 24 C -0.16 -2.46 7.18 -24.34 -0.17 -2.64 16 25 C 0.05 0.79 7.77 38.19 0.30 1.09 16 26 O -0.38 -6.72 10.03 -35.23 -0.35 -7.07 16 27 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.00 -0.02 6.40 -51.93 -0.33 -0.36 16 29 H 0.04 1.15 5.01 -51.93 -0.26 0.89 16 30 H 0.02 0.32 7.31 -51.93 -0.38 -0.06 16 31 H 0.10 2.09 5.48 -51.93 -0.28 1.80 16 32 H 0.07 0.95 8.07 -51.93 -0.42 0.53 16 33 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.40 3.45 9.10 45.56 0.41 3.87 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 36 H 0.07 1.24 7.43 -51.93 -0.39 0.85 16 37 H 0.10 2.08 6.09 -51.93 -0.32 1.76 16 38 H 0.08 1.75 6.08 -51.93 -0.32 1.43 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 317.55 15.07 4.79 4.79 Total: -1.00 -31.04 317.55 -8.01 -39.05 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.38 Total: 7.05 kcal Atomic # 6 Polarization: -4.98 SS G_CDS: -0.91 Total: -5.89 kcal Atomic # 7 Polarization: -36.86 SS G_CDS: -0.32 Total: -37.18 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -1.15 Total: -23.89 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.04 -8.01 -39.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.041 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds