Wall clock time and date at job start Tue Mar 31 2020 05:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00441 * 2 1 4 4 H 1.48499 * 109.47033 * 270.00119 * 3 2 1 5 5 H 1.48504 * 109.46874 * 29.99711 * 3 2 1 6 6 H 1.48501 * 109.47431 * 149.99812 * 3 2 1 7 7 C 1.37884 * 119.99640 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99810 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99844 * 179.97438 * 7 2 1 10 10 N 1.46896 * 109.47432 * 185.79478 * 9 7 2 11 11 C 1.46851 * 110.98986 * 42.81735 * 10 9 7 12 12 C 1.53035 * 109.51198 * 185.85376 * 11 10 9 13 13 C 1.53122 * 109.27986 * 300.81477 * 12 11 10 14 14 H 1.08999 * 109.52292 * 297.75200 * 13 12 11 15 15 C 1.50695 * 109.52463 * 177.56332 * 13 12 11 16 16 O 1.20829 * 119.99894 * 240.31989 * 15 13 12 17 17 O 1.34232 * 119.99934 * 60.31713 * 15 13 12 18 18 C 1.53120 * 109.15951 * 57.65599 * 13 12 11 19 19 C 1.46842 * 111.00246 * 167.02419 * 10 9 7 20 20 H 1.08998 * 109.46502 * 294.16475 * 19 10 9 21 21 C 1.53002 * 109.46253 * 54.14678 * 19 10 9 22 22 H 1.08993 * 110.55396 * 47.32130 * 21 19 10 23 23 C 1.54993 * 110.61601 * 284.43860 * 21 19 10 24 24 C 1.54815 * 102.09439 * 204.32163 * 23 21 19 25 25 C 1.54100 * 104.18471 * 20.88019 * 24 23 21 26 26 O 1.43746 * 107.42257 * 1.95541 * 25 24 23 27 27 H 0.97003 * 119.99405 * 359.97438 * 1 2 3 28 28 H 1.09009 * 109.47214 * 65.79199 * 9 7 2 29 29 H 1.09007 * 109.47363 * 305.79946 * 9 7 2 30 30 H 1.09004 * 109.46695 * 65.83603 * 11 10 9 31 31 H 1.08999 * 109.45425 * 305.85883 * 11 10 9 32 32 H 1.09004 * 109.49831 * 180.87957 * 12 11 10 33 33 H 1.08997 * 109.50534 * 60.75918 * 12 11 10 34 34 H 0.96706 * 116.99707 * 180.02562 * 17 15 13 35 35 H 1.08994 * 109.50305 * 182.40585 * 18 13 12 36 36 H 1.09006 * 109.53277 * 62.30360 * 18 13 12 37 37 H 1.08996 * 110.90719 * 86.11790 * 23 21 19 38 38 H 1.09003 * 110.90973 * 322.51643 * 23 21 19 39 39 H 1.09001 * 110.48503 * 262.20707 * 24 23 21 40 40 H 1.08996 * 110.48794 * 139.55407 * 24 23 21 41 41 H 1.08997 * 109.87671 * 121.45711 * 25 24 23 42 42 H 1.09004 * 109.87906 * 242.45644 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1942 0.0000 10 7 4.0011 -2.5722 -0.1391 11 6 3.2279 -3.3057 -1.1494 12 6 3.6667 -4.7717 -1.1638 13 6 5.1622 -4.8488 -1.4835 14 1 5.3438 -4.4388 -2.4770 15 6 5.6131 -6.2860 -1.4402 16 8 6.4693 -6.6273 -0.6589 17 8 5.0635 -7.1871 -2.2695 18 6 5.9406 -4.0367 -0.4447 19 6 5.4359 -2.5919 -0.4511 20 1 5.5995 -2.1544 -1.4359 21 6 6.1972 -1.7813 0.5998 22 1 5.8746 -2.0573 1.6036 23 6 6.0036 -0.2619 0.3626 24 6 7.2638 0.3346 1.0356 25 6 8.2571 -0.8424 1.0875 26 8 7.6237 -1.9683 0.4570 27 1 -0.4849 0.8401 0.0004 28 1 3.8752 -0.7722 0.9369 29 1 3.8746 -0.5936 -0.8341 30 1 3.4020 -2.8647 -2.1309 31 1 2.1666 -3.2466 -0.9078 32 1 3.1036 -5.3126 -1.9244 33 1 3.4800 -5.2171 -0.1866 34 1 5.3849 -8.0969 -2.2045 35 1 7.0021 -4.0524 -0.6915 36 1 5.7903 -4.4703 0.5441 37 1 5.0964 0.0953 0.8498 38 1 5.9869 -0.0336 -0.7031 39 1 7.0306 0.6816 2.0422 40 1 7.6682 1.1488 0.4344 41 1 9.1691 -0.5816 0.5506 42 1 8.4934 -1.0826 2.1241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:15 Heat of formation + Delta-G solvation = -127.690613 kcal Electronic energy + Delta-G solvation = -23909.665443 eV Core-core repulsion = 20468.742490 eV Total energy + Delta-G solvation = -3440.922952 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.53117 -39.58624 -37.77577 -36.09060 -34.07717 -32.42252 -31.71632 -31.40405 -28.04784 -27.81011 -25.12386 -23.30206 -22.41670 -21.26286 -20.80060 -20.36423 -19.29133 -17.95388 -17.08953 -16.58406 -16.25100 -15.75711 -15.36053 -15.08420 -14.87599 -14.24335 -13.82799 -13.58153 -13.39793 -13.20332 -13.08317 -12.84929 -12.61783 -12.12437 -12.00571 -11.57828 -11.49926 -11.29955 -11.06605 -10.96687 -10.81678 -10.76882 -10.58218 -10.43507 -10.38535 -10.12173 -9.92765 -9.72457 -9.43716 -8.98596 -8.64447 -7.46407 -6.14593 -4.13572 2.27833 3.09797 3.20305 3.27006 3.29507 3.91850 4.32496 4.65939 4.71319 4.85857 4.97544 5.01979 5.13289 5.18392 5.20344 5.31946 5.46760 5.48484 5.65995 5.72332 5.79769 5.83621 5.91940 5.95182 6.00227 6.10541 6.12056 6.24772 6.27885 6.36989 6.47527 6.50834 6.61091 6.68294 6.87275 7.02231 7.12108 7.44949 7.81372 7.94637 7.99308 8.54520 8.90892 9.46203 10.97430 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.013850 B = 0.006831 C = 0.004707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.164211 B = 4098.074480 C = 5946.673401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.872 3.128 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.525 4.525 8 H 0.087 0.913 9 C 0.154 3.846 10 N -0.524 5.524 11 C 0.064 3.936 12 C -0.109 4.109 13 C -0.081 4.081 14 H 0.103 0.897 15 C 0.485 3.515 16 O -0.517 6.517 17 O -0.517 6.517 18 C -0.087 4.087 19 C 0.094 3.906 20 H 0.041 0.959 21 C 0.089 3.911 22 H 0.081 0.919 23 C -0.166 4.166 24 C -0.158 4.158 25 C 0.050 3.950 26 O -0.375 6.375 27 H 0.264 0.736 28 H 0.040 0.960 29 H -0.010 1.010 30 H 0.027 0.973 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.404 0.596 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.658 -5.681 -2.378 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.131 4.131 3 Si 0.699 3.301 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.562 4.562 8 H 0.104 0.896 9 C 0.028 3.972 10 N -0.250 5.250 11 C -0.063 4.063 12 C -0.147 4.147 13 C -0.100 4.100 14 H 0.121 0.879 15 C 0.328 3.672 16 O -0.405 6.405 17 O -0.328 6.328 18 C -0.125 4.125 19 C -0.016 4.016 20 H 0.059 0.941 21 C 0.032 3.968 22 H 0.099 0.901 23 C -0.203 4.203 24 C -0.196 4.196 25 C -0.028 4.028 26 O -0.294 6.294 27 H 0.074 0.926 28 H 0.058 0.942 29 H 0.008 0.992 30 H 0.046 0.954 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.262 0.738 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.096 0.904 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.641 -5.648 -1.839 13.967 hybrid contribution 0.676 1.024 -0.666 1.396 sum 13.317 -4.624 -2.505 14.318 Atomic orbital electron populations 1.69887 1.06152 1.26974 1.50478 1.24910 0.94717 0.98844 0.94584 0.86952 0.80472 0.84132 0.78543 1.20356 1.21203 1.18758 1.21240 0.88909 0.94847 1.51248 0.89554 1.20572 0.96718 0.84413 0.95515 1.61882 0.99426 1.17559 1.46114 1.22105 1.01046 0.90224 0.92952 1.21720 0.91281 0.99100 1.02578 1.21225 0.99047 0.87011 1.02726 0.87920 1.23728 0.78157 0.88980 0.76376 1.90702 1.30987 1.80988 1.37803 1.84582 1.65065 1.23356 1.59835 1.21424 0.98833 0.93387 0.98843 1.21502 0.89911 0.94270 0.95878 0.94139 1.23063 0.80506 0.93811 0.99421 0.90133 1.23785 0.99089 0.95430 1.02017 1.22973 0.96319 0.98585 1.01738 1.23063 0.96157 0.86027 0.97510 1.88864 1.18387 1.43312 1.78855 0.92564 0.94229 0.99239 0.95431 0.87259 0.90712 0.90781 0.73758 0.90508 0.90317 0.87687 0.90863 0.90838 0.90948 0.90449 0.92731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.96 55.43 0.77 -25.47 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 3 Si 0.87 20.31 27.36 -169.99 -4.65 15.66 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.26 -5.68 5.52 56.52 0.31 -5.37 16 7 C -0.52 -13.81 8.86 -34.44 -0.31 -14.12 16 8 H 0.09 2.44 5.97 -52.49 -0.31 2.12 16 9 C 0.15 3.41 2.40 -4.98 -0.01 3.40 16 10 N -0.52 -10.19 4.65 -228.12 -1.06 -11.25 16 11 C 0.06 1.17 5.03 -3.83 -0.02 1.15 16 12 C -0.11 -1.61 5.31 -26.65 -0.14 -1.76 16 13 C -0.08 -1.14 2.70 -91.65 -0.25 -1.39 16 14 H 0.10 1.33 8.14 -51.93 -0.42 0.90 16 15 C 0.48 6.67 7.63 36.00 0.27 6.94 16 16 O -0.52 -8.52 16.73 -18.75 -0.31 -8.84 16 17 O -0.52 -5.56 13.36 -39.26 -0.52 -6.09 16 18 C -0.09 -1.37 3.70 -26.65 -0.10 -1.47 16 19 C 0.09 1.60 1.88 -67.72 -0.13 1.47 16 20 H 0.04 0.71 7.90 -51.93 -0.41 0.30 16 21 C 0.09 1.48 2.66 -25.68 -0.07 1.41 16 22 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 23 C -0.17 -2.68 4.73 -24.72 -0.12 -2.80 16 24 C -0.16 -2.05 7.01 -25.20 -0.18 -2.23 16 25 C 0.05 0.63 7.69 37.73 0.29 0.92 16 26 O -0.38 -5.95 10.29 -35.23 -0.36 -6.32 16 27 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.04 0.89 4.87 -51.92 -0.25 0.64 16 29 H -0.01 -0.22 6.18 -51.92 -0.32 -0.55 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.11 2.26 5.46 -51.93 -0.28 1.97 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.40 2.54 9.10 45.56 0.41 2.95 16 35 H 0.08 1.22 7.55 -51.93 -0.39 0.83 16 36 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 37 H 0.11 1.90 4.05 -51.93 -0.21 1.69 16 38 H 0.07 1.20 7.59 -51.93 -0.39 0.81 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 319.47 15.07 4.81 4.81 Total: -1.00 -30.65 319.47 -7.78 -38.43 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.61 Total: 5.66 kcal Atomic # 6 Polarization: -5.75 SS G_CDS: -0.85 Total: -6.60 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.29 Total: -36.72 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -1.20 Total: -21.24 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.65 Total: 15.66 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.65 -7.78 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.259 kcal (2) G-P(sol) polarization free energy of solvation -30.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds