Wall clock time and date at job start Tue Mar 31 2020 05:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99991 * 2 1 4 4 H 1.48498 * 109.46818 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46744 * 299.99572 * 3 2 1 6 6 H 1.48496 * 109.47283 * 59.99512 * 3 2 1 7 7 C 1.37877 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99772 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00121 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47177 * 185.02722 * 9 7 2 11 11 C 1.42901 * 113.99883 * 176.17088 * 10 9 7 12 12 C 1.53008 * 109.46746 * 180.46130 * 11 10 9 13 13 N 1.46897 * 109.47107 * 83.39946 * 12 11 10 14 14 C 1.46899 * 110.99996 * 291.78786 * 13 12 11 15 15 C 1.52998 * 117.50478 * 142.39987 * 14 13 12 16 16 C 1.52999 * 117.50414 * 73.73558 * 14 13 12 17 17 C 1.46894 * 111.00185 * 167.83055 * 13 12 11 18 18 C 1.50697 * 112.85512 * 172.75776 * 17 13 12 19 19 O 1.20821 * 120.00456 * 144.99534 * 18 17 13 20 20 O 1.34238 * 119.99669 * 325.00221 * 18 17 13 21 21 C 1.53785 * 113.61349 * 41.44837 * 17 13 12 22 22 C 1.53777 * 87.08265 * 220.01873 * 21 17 13 23 23 C 1.53783 * 87.08192 * 25.43423 * 22 21 17 24 24 H 0.96999 * 120.00524 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46959 * 65.03193 * 9 7 2 26 26 H 1.09000 * 109.47179 * 305.03037 * 9 7 2 27 27 H 1.09001 * 109.46739 * 60.46591 * 11 10 9 28 28 H 1.08994 * 109.47317 * 300.45761 * 11 10 9 29 29 H 1.08998 * 109.46660 * 203.39534 * 12 11 10 30 30 H 1.09003 * 109.47117 * 323.39837 * 12 11 10 31 31 H 1.09006 * 115.54810 * 288.06959 * 14 13 12 32 32 H 1.09007 * 117.49599 * 359.97438 * 15 14 13 33 33 H 1.08999 * 117.50147 * 145.01498 * 15 14 13 34 34 H 1.08997 * 117.49769 * 214.98038 * 16 14 13 35 35 H 1.08995 * 117.49776 * 359.97438 * 16 14 13 36 36 H 0.96701 * 117.00084 * 179.97438 * 20 18 17 37 37 H 1.08991 * 113.61504 * 334.57330 * 21 17 13 38 38 H 1.09004 * 113.61274 * 105.47201 * 21 17 13 39 39 H 1.08997 * 113.61736 * 270.88648 * 22 21 17 40 40 H 1.08999 * 113.61591 * 139.97842 * 22 21 17 41 41 H 1.08998 * 113.61754 * 220.01656 * 23 22 21 42 42 H 1.09002 * 113.61602 * 89.11341 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 2.1751 -3.5827 0.1201 11 6 1.5557 -4.8668 0.2180 12 6 2.6340 -5.9441 0.3514 13 7 3.0480 -6.0512 1.7568 14 6 3.7679 -4.8451 2.1869 15 6 3.5209 -4.3452 3.6116 16 6 2.9451 -3.5764 2.4197 17 6 3.8602 -7.2554 1.9760 18 6 4.4523 -7.3180 3.3604 19 8 4.5755 -8.3831 3.9173 20 8 4.8427 -6.1902 3.9749 21 6 4.8788 -7.5239 0.8556 22 6 4.5243 -9.0135 0.9976 23 6 3.1620 -8.5562 1.5454 24 1 -0.4851 0.8400 0.0004 25 1 0.6933 -2.5975 -0.9297 26 1 0.5588 -2.5183 0.8435 27 1 0.9640 -5.0539 -0.6780 28 1 0.9072 -4.8915 1.0937 29 1 2.2345 -6.9013 0.0164 30 1 3.4944 -5.6749 -0.2613 31 1 4.7716 -4.7261 1.7787 32 1 2.8238 -4.9110 4.2298 33 1 4.3620 -3.8970 4.1406 34 1 3.4075 -2.6229 2.1651 35 1 1.8696 -3.6366 2.2534 36 1 5.2163 -6.2805 4.8623 37 1 4.5932 -7.0968 -0.1056 38 1 5.9064 -7.2911 1.1348 39 1 5.1353 -9.5398 1.7309 40 1 4.4577 -9.5392 0.0452 41 1 2.8036 -9.1568 2.3813 42 1 2.4070 -8.4113 0.7726 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:35 Heat of formation + Delta-G solvation = -62.248778 kcal Electronic energy + Delta-G solvation = -23905.510703 eV Core-core repulsion = 20467.425522 eV Total energy + Delta-G solvation = -3438.085181 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.31309 -38.84302 -37.53412 -36.32059 -35.42183 -33.16070 -32.47438 -29.20647 -26.99744 -26.04384 -25.31467 -23.13838 -22.29679 -21.80933 -21.43049 -20.36104 -19.05870 -17.97092 -16.86897 -16.35589 -16.12215 -15.65571 -15.41101 -15.13234 -14.77129 -14.59404 -14.32274 -13.98999 -13.42380 -13.11712 -12.90031 -12.50992 -12.12518 -11.93497 -11.77046 -11.57414 -11.32824 -11.22144 -11.05890 -10.83784 -10.77991 -10.73678 -10.63303 -10.43231 -10.28384 -10.04088 -9.51352 -9.30837 -9.07710 -8.73398 -8.21603 -8.06338 -6.10711 -4.11839 2.07178 2.94909 3.28264 3.35467 3.40622 3.82489 4.24300 4.32416 4.36717 4.54699 4.60714 4.86243 4.93647 5.24352 5.27254 5.33185 5.45243 5.52970 5.62586 5.67921 5.71292 5.73627 5.78726 5.86086 5.87842 6.03711 6.12219 6.22321 6.25491 6.29297 6.37062 6.45652 6.96025 6.99681 7.08752 7.15214 7.38079 7.45139 7.79926 7.88951 8.16723 8.59772 9.02093 9.53212 11.00761 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028294 B = 0.004377 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.375425 B = 6395.611196 C = 6913.741553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.508 4.508 8 H 0.065 0.935 9 C 0.196 3.804 10 O -0.386 6.386 11 C 0.064 3.936 12 C 0.058 3.942 13 N -0.490 5.490 14 C 0.009 3.991 15 C -0.152 4.152 16 C -0.116 4.116 17 C 0.094 3.906 18 C 0.513 3.487 19 O -0.519 6.519 20 O -0.482 6.482 21 C -0.160 4.160 22 C -0.140 4.140 23 C -0.114 4.114 24 H 0.263 0.737 25 H -0.003 1.003 26 H 0.008 0.992 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.395 0.605 37 H 0.105 0.895 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.962 -15.239 4.336 17.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.546 4.546 8 H 0.083 0.917 9 C 0.122 3.878 10 O -0.306 6.306 11 C -0.014 4.014 12 C -0.069 4.069 13 N -0.215 5.215 14 C -0.099 4.099 15 C -0.190 4.190 16 C -0.153 4.153 17 C 0.002 3.998 18 C 0.355 3.645 19 O -0.407 6.407 20 O -0.291 6.291 21 C -0.200 4.200 22 C -0.178 4.178 23 C -0.152 4.152 24 H 0.072 0.928 25 H 0.015 0.985 26 H 0.026 0.974 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.070 0.930 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.253 0.747 37 H 0.123 0.877 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.100 0.900 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.447 -15.357 4.389 17.623 hybrid contribution 1.007 0.869 0.037 1.331 sum 8.454 -14.489 4.426 17.349 Atomic orbital electron populations 1.69966 1.06072 1.26945 1.50723 1.24924 0.94893 0.99310 0.95278 0.86359 0.80026 0.82977 0.77584 1.19568 1.20992 1.20893 1.21035 0.93865 0.89268 1.50419 0.91663 1.20129 0.88954 0.83771 0.94989 1.87967 1.35138 1.13340 1.94128 1.22223 0.94204 0.85653 0.99272 1.22277 0.98625 0.98453 0.87535 1.61931 1.38574 1.00153 1.20819 1.22135 0.96518 0.91044 1.00162 1.22828 1.02264 1.03218 0.90690 1.23140 1.00540 0.94026 0.97597 1.22099 0.94711 0.93912 0.89091 1.22465 0.73839 0.81319 0.86906 1.90679 1.52970 1.31275 1.65816 1.85202 1.73661 1.35316 1.34964 1.23625 0.99391 0.97484 0.99453 1.22833 0.97294 0.95827 1.01802 1.23101 0.97315 0.93147 1.01612 0.92784 0.98482 0.97378 0.94225 0.93319 0.89987 0.93038 0.90492 0.89979 0.89835 0.88259 0.88184 0.74690 0.87722 0.91160 0.89505 0.90622 0.89963 0.88208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.13 9.43 -34.44 -0.32 -14.45 16 8 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 9 C 0.20 5.05 5.04 36.01 0.18 5.23 16 10 O -0.39 -8.44 6.87 -35.23 -0.24 -8.68 16 11 C 0.06 1.13 5.26 37.16 0.20 1.33 16 12 C 0.06 0.82 4.19 -3.82 -0.02 0.81 16 13 N -0.49 -7.02 4.65 -211.49 -0.98 -8.01 16 14 C 0.01 0.15 3.33 -67.71 -0.23 -0.08 16 15 C -0.15 -2.24 7.29 -26.69 -0.19 -2.43 16 16 C -0.12 -2.10 7.13 -26.69 -0.19 -2.29 16 17 C 0.09 1.16 1.13 -131.94 -0.15 1.01 16 18 C 0.51 6.61 7.41 36.00 0.27 6.87 16 19 O -0.52 -7.56 16.11 -18.75 -0.30 -7.87 16 20 O -0.48 -5.29 7.82 -39.28 -0.31 -5.60 16 21 C -0.16 -1.74 6.95 -25.92 -0.18 -1.92 16 22 C -0.14 -1.35 7.69 -25.92 -0.20 -1.55 16 23 C -0.11 -1.23 6.89 -25.92 -0.18 -1.41 16 24 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 25 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 26 H 0.01 0.23 7.79 -51.93 -0.40 -0.18 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.89 7.17 -51.93 -0.37 0.51 16 29 H 0.08 0.96 5.74 -51.93 -0.30 0.66 16 30 H 0.05 0.76 6.68 -51.93 -0.35 0.42 16 31 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 33 H 0.08 1.10 7.94 -51.93 -0.41 0.69 16 34 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 35 H 0.10 2.04 5.06 -51.93 -0.26 1.77 16 36 H 0.40 2.67 9.10 45.56 0.41 3.09 16 37 H 0.10 1.11 5.83 -51.93 -0.30 0.81 16 38 H 0.07 0.76 8.10 -51.93 -0.42 0.34 16 39 H 0.09 0.90 7.60 -51.93 -0.39 0.51 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.94 7.65 -51.93 -0.40 0.55 16 42 H 0.10 0.97 5.99 -51.93 -0.31 0.66 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -30.98 326.35 -7.90 -38.88 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.58 Total: 2.92 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.11 Total: -7.39 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: -0.25 Total: -33.51 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.85 Total: -22.14 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.98 -7.90 -38.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.371 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds