Wall clock time and date at job start Tue Mar 31 2020 05:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99991 * 2 1 4 4 H 1.48498 * 109.46818 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46744 * 299.99572 * 3 2 1 6 6 H 1.48496 * 109.47283 * 59.99512 * 3 2 1 7 7 C 1.37877 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99772 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00121 * 359.97438 * 7 2 1 10 10 O 1.42899 * 109.47177 * 185.02722 * 9 7 2 11 11 C 1.42901 * 113.99883 * 176.17088 * 10 9 7 12 12 C 1.53008 * 109.46746 * 180.46130 * 11 10 9 13 13 N 1.46897 * 109.47107 * 83.39946 * 12 11 10 14 14 C 1.46899 * 110.99996 * 291.78786 * 13 12 11 15 15 C 1.52998 * 117.50478 * 142.39987 * 14 13 12 16 16 C 1.52999 * 117.50414 * 73.73558 * 14 13 12 17 17 C 1.46894 * 111.00185 * 167.83055 * 13 12 11 18 18 C 1.50697 * 112.85512 * 172.75776 * 17 13 12 19 19 O 1.20821 * 120.00456 * 144.99534 * 18 17 13 20 20 O 1.34238 * 119.99669 * 325.00221 * 18 17 13 21 21 C 1.53785 * 113.61349 * 41.44837 * 17 13 12 22 22 C 1.53777 * 87.08265 * 220.01873 * 21 17 13 23 23 C 1.53783 * 87.08192 * 25.43423 * 22 21 17 24 24 H 0.96999 * 120.00524 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46959 * 65.03193 * 9 7 2 26 26 H 1.09000 * 109.47179 * 305.03037 * 9 7 2 27 27 H 1.09001 * 109.46739 * 60.46591 * 11 10 9 28 28 H 1.08994 * 109.47317 * 300.45761 * 11 10 9 29 29 H 1.08998 * 109.46660 * 203.39534 * 12 11 10 30 30 H 1.09003 * 109.47117 * 323.39837 * 12 11 10 31 31 H 1.09006 * 115.54810 * 288.06959 * 14 13 12 32 32 H 1.09007 * 117.49599 * 359.97438 * 15 14 13 33 33 H 1.08999 * 117.50147 * 145.01498 * 15 14 13 34 34 H 1.08997 * 117.49769 * 214.98038 * 16 14 13 35 35 H 1.08995 * 117.49776 * 359.97438 * 16 14 13 36 36 H 0.96701 * 117.00084 * 179.97438 * 20 18 17 37 37 H 1.08991 * 113.61504 * 334.57330 * 21 17 13 38 38 H 1.09004 * 113.61274 * 105.47201 * 21 17 13 39 39 H 1.08997 * 113.61736 * 270.88648 * 22 21 17 40 40 H 1.08999 * 113.61591 * 139.97842 * 22 21 17 41 41 H 1.08998 * 113.61754 * 220.01656 * 23 22 21 42 42 H 1.09002 * 113.61602 * 89.11341 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 2.1751 -3.5827 0.1201 11 6 1.5557 -4.8668 0.2180 12 6 2.6340 -5.9441 0.3514 13 7 3.0480 -6.0512 1.7568 14 6 3.7679 -4.8451 2.1869 15 6 3.5209 -4.3452 3.6116 16 6 2.9451 -3.5764 2.4197 17 6 3.8602 -7.2554 1.9760 18 6 4.4523 -7.3180 3.3604 19 8 4.5755 -8.3831 3.9173 20 8 4.8427 -6.1902 3.9749 21 6 4.8788 -7.5239 0.8556 22 6 4.5243 -9.0135 0.9976 23 6 3.1620 -8.5562 1.5454 24 1 -0.4851 0.8400 0.0004 25 1 0.6933 -2.5975 -0.9297 26 1 0.5588 -2.5183 0.8435 27 1 0.9640 -5.0539 -0.6780 28 1 0.9072 -4.8915 1.0937 29 1 2.2345 -6.9013 0.0164 30 1 3.4944 -5.6749 -0.2613 31 1 4.7716 -4.7261 1.7787 32 1 2.8238 -4.9110 4.2298 33 1 4.3620 -3.8970 4.1406 34 1 3.4075 -2.6229 2.1651 35 1 1.8696 -3.6366 2.2534 36 1 5.2163 -6.2805 4.8623 37 1 4.5932 -7.0968 -0.1056 38 1 5.9064 -7.2911 1.1348 39 1 5.1353 -9.5398 1.7309 40 1 4.4577 -9.5392 0.0452 41 1 2.8036 -9.1568 2.3813 42 1 2.4070 -8.4113 0.7726 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068044.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:34 Heat of formation + Delta-G solvation = -83.214636 kcal Electronic energy + Delta-G solvation = -23906.419851 eV Core-core repulsion = 20467.425522 eV Total energy + Delta-G solvation = -3438.994329 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 283.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.29228 -39.93755 -38.78460 -37.73402 -36.55386 -34.95572 -34.02437 -30.61161 -28.89052 -26.89575 -26.46615 -24.50548 -24.04116 -23.15084 -22.63006 -21.53788 -20.03299 -18.97923 -18.53840 -17.90929 -17.35640 -17.08203 -16.48268 -16.45518 -16.36965 -15.96777 -15.53483 -15.34638 -15.04399 -14.13523 -14.09179 -13.84515 -13.57010 -13.24424 -13.02457 -12.97364 -12.66031 -12.62709 -12.54212 -12.34590 -12.13075 -12.00576 -11.95103 -11.73390 -11.62454 -11.23725 -11.16366 -10.94820 -10.67976 -10.57875 -9.96183 -9.31370 -8.26049 -6.35750 1.08869 1.41896 1.42226 1.56314 2.07155 2.37476 2.69845 3.08383 3.19950 3.32788 3.41529 3.49386 3.78307 3.97749 4.15340 4.24472 4.31150 4.41287 4.49640 4.56635 4.62116 4.69768 4.72300 4.84349 4.86773 4.96214 4.96452 5.00812 5.02606 5.06366 5.10959 5.28837 5.35263 5.50619 5.57561 5.59486 5.63009 5.97234 6.05379 6.15324 6.63573 6.92845 7.03027 7.35802 8.86395 Molecular weight = 283.16amu Principal moments of inertia in cm(-1) A = 0.028294 B = 0.004377 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.375425 B = 6395.611196 C = 6913.741553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.974 3.026 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.061 0.939 9 C 0.216 3.784 10 O -0.388 6.388 11 C 0.057 3.943 12 C 0.067 3.933 13 N -0.497 5.497 14 C 0.022 3.978 15 C -0.122 4.122 16 C -0.142 4.142 17 C 0.082 3.918 18 C 0.514 3.486 19 O -0.539 6.539 20 O -0.484 6.484 21 C -0.157 4.157 22 C -0.128 4.128 23 C -0.112 4.112 24 H 0.267 0.733 25 H -0.025 1.025 26 H -0.016 1.016 27 H 0.049 0.951 28 H 0.039 0.961 29 H 0.116 0.884 30 H 0.050 0.950 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.415 0.585 37 H 0.109 0.891 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.074 0.926 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.393 -16.109 4.363 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.191 4.191 3 Si 0.798 3.202 4 H -0.188 1.188 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.565 4.565 8 H 0.079 0.921 9 C 0.141 3.859 10 O -0.308 6.308 11 C -0.020 4.020 12 C -0.060 4.060 13 N -0.222 5.222 14 C -0.086 4.086 15 C -0.160 4.160 16 C -0.180 4.180 17 C -0.009 4.009 18 C 0.357 3.643 19 O -0.429 6.429 20 O -0.296 6.296 21 C -0.196 4.196 22 C -0.166 4.166 23 C -0.149 4.149 24 H 0.076 0.924 25 H -0.008 1.008 26 H 0.002 0.998 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.134 0.866 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.276 0.724 37 H 0.127 0.873 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 8.894 -16.245 4.430 19.043 hybrid contribution 0.552 1.067 0.079 1.204 sum 9.445 -15.178 4.509 18.436 Atomic orbital electron populations 1.70077 1.07691 1.28201 1.51275 1.25845 0.95766 1.03050 0.94442 0.85263 0.78847 0.78138 0.77944 1.18801 1.20143 1.20083 1.21306 0.93794 0.90553 1.50838 0.92112 1.19652 0.88682 0.84927 0.92664 1.87952 1.34493 1.14236 1.94072 1.22493 0.95667 0.84582 0.99275 1.22248 0.97498 0.98500 0.87752 1.61899 1.39172 1.00327 1.20755 1.22064 0.95565 0.90281 1.00674 1.22821 1.02051 1.01136 0.89981 1.22801 0.98984 0.94289 1.01932 1.22333 0.95593 0.93343 0.89648 1.22517 0.73496 0.81273 0.86996 1.90676 1.53972 1.31962 1.66281 1.85096 1.73459 1.34674 1.36399 1.23625 0.98861 0.98331 0.98752 1.22764 0.96064 0.95123 1.02603 1.23152 0.98163 0.91918 1.01709 0.92376 1.00768 0.99782 0.93332 0.94261 0.86576 0.93147 0.90791 0.89646 0.87785 0.91101 0.90975 0.72382 0.87265 0.91192 0.90227 0.88366 0.90725 0.86930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 7 C -0.53 -30.15 9.43 25.60 0.24 -29.91 16 8 H 0.06 3.45 7.81 -2.91 -0.02 3.43 16 9 C 0.22 11.64 5.04 71.24 0.36 11.99 16 10 O -0.39 -17.47 6.87 -148.98 -1.02 -18.50 16 11 C 0.06 2.02 5.26 71.98 0.38 2.40 16 12 C 0.07 1.79 4.19 86.31 0.36 2.15 16 13 N -0.50 -13.55 4.65 -823.01 -3.83 -17.38 16 14 C 0.02 0.68 3.33 44.91 0.15 0.83 16 15 C -0.12 -3.47 7.29 30.62 0.22 -3.25 16 16 C -0.14 -5.32 7.13 30.62 0.22 -5.10 16 17 C 0.08 1.87 1.13 3.31 0.00 1.87 16 18 C 0.51 12.27 7.41 71.23 0.53 12.80 16 19 O -0.54 -14.78 16.11 21.98 0.35 -14.43 16 20 O -0.48 -9.58 7.82 -51.50 -0.40 -9.99 16 21 C -0.16 -2.99 6.95 31.12 0.22 -2.77 16 22 C -0.13 -2.10 7.69 31.12 0.24 -1.86 16 23 C -0.11 -2.13 6.89 31.12 0.21 -1.91 16 24 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 25 H -0.03 -1.45 8.14 -2.39 -0.02 -1.47 16 26 H -0.02 -0.90 7.79 -2.39 -0.02 -0.92 16 27 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 28 H 0.04 1.47 7.17 -2.39 -0.02 1.45 16 29 H 0.12 2.35 5.74 -2.39 -0.01 2.34 16 30 H 0.05 1.40 6.68 -2.39 -0.02 1.38 16 31 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.09 2.40 8.05 -2.38 -0.02 2.38 16 33 H 0.10 2.54 7.94 -2.39 -0.02 2.52 16 34 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 35 H 0.07 3.09 5.06 -2.39 -0.01 3.08 16 36 H 0.42 4.58 9.10 -74.06 -0.67 3.91 16 37 H 0.11 2.01 5.83 -2.39 -0.01 1.99 16 38 H 0.07 1.35 8.10 -2.38 -0.02 1.33 16 39 H 0.08 1.47 7.60 -2.39 -0.02 1.45 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.07 1.56 7.65 -2.39 -0.02 1.54 16 42 H 0.11 1.82 5.99 -2.39 -0.01 1.81 16 Total: -1.00 -67.91 326.35 1.36 -66.55 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.36 Total: 14.94 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 3.60 Total: -11.90 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -3.54 Total: -72.65 kcal Atomic # 8 Polarization: -41.84 SS G_CDS: -1.07 Total: -42.92 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -67.91 1.36 -66.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068044.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.667 kcal (2) G-P(sol) polarization free energy of solvation -67.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds